result

Gene information

Detail information of g267711

Location

Gene	Chr	Start	End	Strand
g267711	Scaffold_59800:HRSCAF_442886	297174	303950	-

Sequences

CDS

Protein

Gene

>g267711.t1
ATGTTACCTTACAATAGCCAAGAATCCTCTTATAATTTCTTGACTACGTCTAACTGTTTGAGTTGTCATGACTTTCCCGCTCCTTCTGATAATTCCTTCTTATTGCAAAGCCAACAATTTATTGCTTGTTATCAAGAACCCAAACTCGATAGCAGTGCAGACACAACCAAACAAAGATCTGAAGGACAAAAAAAAATACTGACGAAACAAGGACTTAGAGATCCAAGAGTCCGACTATCGGTTGAGGTTGCTCATAAGTTCTTTAAGCTGCAAGATCTTCTTGGTTTTAACAAAGCAAGTGCAACCGTCGATTGGTTAATCAACCAATCTAGGGTTTCCATTCAACAACATTTAAATGTCGATTTTTCAGATGAACGTTTTGGTAAGCGGGAACCAAATTTTGCAACACCAAGGAAAGCTTTGAAGAGTAAAAACGAAATGAGGAAAGAGGCAAGGACTCGAGCAAGGGAACGAACAATGGAGAAGAAAGTAAAATTGACGATGGAGGGAAATGAGGCGAACGTTGATGACGATCAGACGGTGTATTATTGTCAAGATTATTTGGATGGAAGTTATGATGATGACATGAATTCATTTTGTGAGCATTTGAATGGAGACTCCTTCACTCCTTTTTAATGAGGTATTACTTTGATCTTGAAGTTATGGTATTCTTATCAAATAATCATTGTGGTTTTAAATTTCCAAACATTTATAAGGTATGCTGCTCCCAAAAAAAATATGATCTTCACTTATGTATGGAAGCCTTTAATTGTTAAGGTACTATAACAGTACATACTAGACACTGAAGTAGCTAAGAATTAAACTAGAAACTAAAAGTTTTAAAAAAAAAAAGTATACATGCTACCATTAAAATTTCAGAAAGTCAATTTCATATGAATAATTGGAAGTGATAATCAACCATGTTGCATGTTTCTTCATTTGCTGATGAATTTAATGTTAGAATTTAATACATATCATCTATTGACTACGAAACCCTGATCAAAAAATAAACTCATATTGATTTAATTGAAAAATATATAACAGATAACATGATTGCGGAAGCCATACCCAATTTGAAAAGAGAAGAGCAATTGAGTTTGGTTTTCTACAAACTATTGCATACCCTAAATCTTATATTAAGTCTCCATAGAAAAGAATTGGAGAGCTTCTAAGACTTGTCTAAGTTGGGATCATAATTTTTTATTTATAATGTTGACATTTTTTAATTTGTTACTTCAACAAATTAAAATCTTCCGATAGCAACACATTAATATCATGGGAATAGTCTTTGTAGTTTTAATTTAAAATTTGATCACCTTAGTTGGGTTTTACACCAAAACAAGATAATACATTTTATTTTACATATGTTGTCCATATGTTGAAAAATATTCTAACTTTTAAAGAGAGAACATAGATTAAATATATAAATAAAGTTTGACCTCAAGAAGTACATATAGCATGAAGTAAGCGTCTGTATGTGTGTCTATCTACACATACACGAGGTGCAGCTAACCCACACACCCCTATACAAAAGAAGATAAATAAATCAGACAAAAGACAAAGTTTGAAATATTTTATTTGTTTCAATCCTCAAGTTATTTAACAGATACGAAATCATTCCATTTTATTAGGCGATCATTATGTGGTGTTTTTAAAACCTGAAATGTGCTTTTAAGAAGATGCAGTTCGTTTTATATGATCTACATTATCAATAATAGGAGAAATGTATGTATGTGTAGTGATTGTATATTGTTACTAATTTTTTTTTTGGGTAGTCATGTAAAAATTAGATGCGGTTACAGGGTCATGTACATCTGAATAAGATTTAACTAAACTCACATAAAATTAATGAAATACGGATGCTTGAACTAATCCCTATTCACTGATGTTCAGTAGCTCTATTTAATTAAAGTTAAGACTTGCGTACATTTTAATCTTAATTAACTGGCTGAAACAGAAGTCAACAATTGAATTTTTTTTAAACAAATCGAGCCACTTATGACAATGATAATTGGTTATCTTATAAGTTTATGCTAAGATACGATACTAATTGCATATATACCACGCATAAGACCCTGGCTTAAGGTGATATTTTTGTTTGTAAAATAATTTTTATGTGGCTAAATATAAACGTATAACCTGCAGCAAGCTAGTAATGCCATTAGCAAAAATAAATAAAATCAAATGAAATAAAATAAAAGGAGTGGAAGGCCTTAAGAATCGTTGATAATAATTTTAAGAGAACAAAAAAGCCTTGACAAAGAGCTTACCTAAAATAGAAATAGTGACAAATACATGTTCCTTTGCTGGACTCCTCTTAGAACATTGCCAATGGCTAGTGACCAAACAAAGCACCACATATTCAAGATTCAAATGAGCCTTACTCAGACCAAGGTATTAATTAAATCTCAGATTTTGATCACTTTCATCTCGGAAATTCTAAAGGTCCGATCTCATATCTGAGGAGATATCGGATGAGTTTAGTACAGCGTCCATCTCGAATTATATAATTCATTTGGGAGACATCTCAGACTAAATGTTATCTCTAAAATTGATTTGTATGCACACTATGTTAAAATAAATTTTTTACTTGAGTTGCTTTTTCGTTAATTCTACTCCGAATCTCCAATTCCATTTCTAATTGATTTAAATCATCTTATGGTTCAATATTGATTAACACAAAAATTAAGAAATTTCATAATTTGAACATCTCTTACCAAGTTCTATCAAATTACACATATTAAAGTTACCATAATTCTCTAACAAGTCAAATCAATGTAAAATCACAATTAAACATCTTTCTAATCAAATATAGTCATCTTCTAGTATTAAAATGAATCAAACAGCAACAATACTTATCATTTTACATTATGATAGGAAAATAACATGCAATCATGAATGAGAGGAATCAAGTGAGATATTTACTCACTAATTTCTCTTAACCTATATCAGATTTGAATTCTCTCTTTTTTTCTTCTTTTTCTCCTCAAATAATTTTTCATCTCGTCGTATGGTTCTCATGTCAAATCACATACAAGACAGAAATAGATGGATGGAATAATGTATTTATGACTCGTGAAAGTTTGGCCTTGAAGTTGAATTTTTGAATCCATTGAAATTCTCAAATTATTTTTAGTGACCCTCTTTTTTCTGAGATTCAACTAGACGTTTGATCATATCTCTAGTTATGTCCATTCGAAGGTGATTTGGTTTGTATCGTTGCTTTTGTTGACATCAAAAACCTCCAATTCAACGGGTCACATGTATATATAAGTATTTGTTATGCTATTTATCACACAAATTTTATTTTCATCAAAATTCTAATTGTCTCAAAAAAATCTTAATATTGGCCAAGATATCAAATTTGATCTCAGTTGAGATATCGCCTAAGATACCGAGATCTCAAGCGATATATGGAAAACGAGATTTTCGTCAAAATTTTGTGTTTCCTTTCGCTAGAATTCCTCCTCAAGATCTCGAAGAGATATTGTTGGATATTTAAATAGTGCAAGGTATAATGAGCAGCTCTTATGGCTTATTCAATTGTCAAAGGGATAAGCAATTAAAATGACAACGGTGGTTTCTTGGTCATGATCAGCTAAAGCTAAGTTCTATGTCTTCCTAATGCTTACACGCTATGTCGTCTTAACAATCTTTTACATACTCACGCAAACATTTTTGTTATTATTTTGTTTGGTTTTTGCCTTATTCGGTTGCTACTTGATGCGTTGTGTGTTATGGTTAGATGATAATGGTAGGAAAAATGGAAGTGAATACACCAACTATTGGGAATGCTTTTATCGTCATTTCAACAATAATTAAGTAACACAGTGTAAATTTAGTATGTCTACTCTTTCAGTAAAACATATATTGTGAGTGTTAACTAGGGGAGTATGATGGGTGCATTTATCAAACTCCTTAAAATTATATATATACTTAGAGCATCTCTAGCGATAAGTTATAAAACAAGTTGATTGGAAGAAAAACATGTTGAGTTTTCAATTACACTAGTTTAACTATAACTACTTCAACAAGACAGCTTCATAAAACCCGTGGCAAGGTATTATTTTTATGTCTACATATTGTAATCATTAACACGTGCCATAAGGGCACATTTAGCAATGATTGATTTAAGCTAAAAGTCATGGAACTTTTTGAAATACTCATTTTGTCCTTGCATAAAAGTTAATAAGTAATATTCAGAGGGCAACTTAGGTGATTTAACAGCCTTAAGATATCTTTAGGACACCTGATAACATTTCCTTCACACCTGACACATATAAACAATAACAATTTAAGTAAACAATAACAAATTAAAGTAAACGTATGTTGTTGATACATTAACCATGTGTAGTTGATGCATGAAAACAATAATCGTACCTGCATGTTACATAAATCATCAATGAAGAACCCATGTTCATTGGCCAATGAATATTATAAAGTAGTTATTAGGTGTGGCTTCATTGTAAATGGAGTGGGTGCGTGGATTGAAGAGGTTAAAAGTCACACATCGTAGAATATTTGAAATGATCATGGTATATATATAAGATTGGTGACGCGTAACATTGGGAATTCCTTTGTTACAATGTGTTGCAAGACCAAATTATATGCTCGATAGAGGTGGTGGAGGGACGTTCAATCGGAACGCCGACATAGGAGACTTCGACCGTTAACTAACCCACACACGGTGAAGCGTAAGCGGACAGAACGCGGGAATGCCAAAATTTAACATGGTATCAGAGCTCCACGGTTCGAGGGACCGGTATGATGCAGCGTGATCGAAGCATGGCTCCAAAGAGGGCTTGAGCATAGGATGTTCGTCAAGGTGGAGATATGGTTAAATCAGTTTGCCCTTCCTGCTTATGAGAACTCGAAGTAGCAGCTTTACACCACTACGAAGAGAACTTGGCATAACTCCAAAGGTGACTTGAGCAATGCTCGCCAAGGTGGAGATTGTTAGGCATGGCTCGCATTGTAAATGGAGTGGGCGCGTGGATTGAACAGGGTAAAAGTTCCACATCGTATGATATTTGGAATAATCGTGGTATATATATATATGAAATTGATGGCACGTAACATTGGAGATTCCTTTTATTACAATGTGTTGCCAAGATCAAATTATATGCTCAATGAAGGCGATGAAGGAATGTTCAATCAGGATGTCGGCATAGAAGACTTCGACCGTTAGCTAACCCACACACAGTGAAGCGTACGCGTACGGAACGCGAGAATGTCGAAACTTAACAGTAATAAAATTTAACCGATTATTTTAGTTCATTCTTGCTTTTATAACTGTTGTAGCAATTTACTTCTTAATTAATAAATCATCAAATTTAGGTTTGTAGTAACAAAAGTAGTATGTGCTTTAACTAAAATAAAATGTGAACAATGTATAAAAAAATTTAACCTAGATAGCAAGATGCACATTTTGAATTAAATCATATAAATTATCTTATTTAATGAAGATTGTAGTAAAAAGTGAAAAAGTTGCACTATGTTGTAATAATAAGTACTACATGCAATCCATCTTTTAGGAAAAATTTGCACATTTCTTAACCGTGGATTTCAGAAAACTGAAAGTGTTAAAGCGAAGTTCCAAAACTCACTGCAACTGATATTTTGCAGCGGCTGATTTCGATTTAAGTGCGAAAATTTCCAACTTTATTGTTGTATTAGGATTCACTTGAAAACTATGAGTTAATAAAAGTTTTAAAAAGGGAATAACACTACCGAATATCCTTTTACAAGAGTATGCAAGGTATGGAAATTTGATGTTTTGTTTCACATTTTTGGATCAATAATAAAATTGGCATTTTACCCCTCTTTTTTTGGTTAGAATTTGTACCATGGATATATCTAATTAATTAGTTCACATATTGTCTAACGGCCATAAGGATTTTTTTTGGAGTCATATTTGATATTAACAAAAGGTTTTGTTGTAGTTGATAATTTGTACTTAACAAACTTAGTTCATATCTATGACATTCATAGTTAAAAAGTCATGCAATGCTCAAGTAAAATACATAAAAATGTGGGAAATGTATCATTTACCTAATGACATTTGTGTCTTACTACATTGAATGGTAAAGGATTAATATGGTCGTTTCCTCTTTCGTGATTTTATTAAAATGTAGAGAGATAACTTGAGACATTTATTCAAAATGAAGTGTTACTCAAATTTCAAATATTAAATAGTACTTTGTATCAGTACAAAAGTATCATACAAACAGACTTCGTAGAATAAATTTGCTTAATCCCAAAGTTTTACGTGTAAATAAAAATATGTGATCACATTGGGATATTTATTAAGTTGTTACAAGTTTGTATATAAATCGTTGCAAGTTTTAATATCCTAGAGAGTTGATGAATGTGGGTTACGTATTTGATATTTGAAAAAAAAACCAAGAACTAGGTATGTATAGATGTTGACAGTATAAATCAACTTTTATGTTATGTCGAAGAATCGTATCTTAATCGATAAGTATACAATATTAGGTTAAACATGCTATCTACATGGACATTTATAGGTTGGATTGTTACTATGTTTATGCCCAACAAGTTCTTGATGTATATTTTTCCCCTAAAGTATATGCTTGCATCACAAATTAGATTTTTATGTTAATTTGAATTAAACAACCAATTAGAAATTAACAATTTTGACTAATTTGATGAATCGTTATCAGGTATCCAGTTGAGTTTTCTACAATCAAAGCTACAATGATTTCATCAAGAAAAAACAAAAAAGATCCTACATTTCATGGATTGATTCTTGTGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020269973.1	4.5e-13	transcription factor TCP12-like
Swissprot	Q8LN68.1	1.3e-12	TCP transcription factor 8
trEMBL	A0A5P1ERD4	3.2e-13	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G67260.1	55.22	2e-14	76.3	TCP1	TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g267711	AT1G67260.2	67	27	1	65	128	93	159	55.22	1e-14	76.3
g267711	AT1G67260.1	67	27	1	65	128	93	159	55.22	2e-14	76.3
g267711	AT3G18550.2	87	48	1	28	114	119	203	42.53	6e-14	74.3

Ortholog group

Species	Genes
Allium cepa	g267711.t1; g483212.t1
Allium fistulosum	AfisC5G02069
Allium sativum	Asa8G03284.1; Asa8G03286.1; Asa8G03288.1; Asa8G03289.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	64	118	78.3	7.9e-22

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001763	P	morphogenesis of a branching structure
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010016	P	shoot system morphogenesis
GO:0010223	P	secondary shoot formation
GO:0010346	P	shoot axis formation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022603	P	regulation of anatomical structure morphogenesis
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048367	P	shoot system development
GO:0048731	P	system development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0060688	P	regulation of morphogenesis of a branching structure
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1900618	P	regulation of shoot system morphogenesis
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000032	P	regulation of secondary shoot formation
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905393
GO:1905428

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network