result

Gene information

Detail information of g270725

Location

Gene	Chr	Start	End	Strand
g270725	Scaffold_60224:HRSCAF_443310	183214	186861	-

Sequences

CDS

>g270725.t1
ATGAAAATGGGAATTAAGTCTTGGTTGTGCTGCGGTGCTGATTCGAACAGGAGTGAAAAGGGGAAGAAAAATTCATCTGGATGGAGGATATTTTCCCTTAAAGAGTTGCATTCTGCGACGAATAATTTCAATTATGATAATAAGTTGGGTGAAGGAGGTTTCGGTAGTGTTTATTGGGGTCAACTATGGGATGGATCTCAGATTGCTGTTAAAAGATTAAAAGTTTGGAGCAACAAAGCAGAAATGGAATTTGCGGTCGAGGTAGAAATCTTAGGCAGAGTGAGGCATAAAAATCTGCTCAGTTTGCGTGGATATTGTGCTGAAGGGCAAGAGCGATTAATAGTATATGATTACATGCCTAATTTAAGTTTACTATCACATCTTCATGGCCAGCATTCATCTGAATGCCTTCTAGATTGGAGCAGGCGCATGGCAATTGCCATAGGATCTGCTGAAGGCATTGCCTATCTACACCACCACGCGACGCCCCACATAATCCACAGAGACATAAAAGCAAGCAACGTGCTACTAGACTCCGATTTTCAAGCCCGAGTGGCCGACTTCGGGTTTGCCAAACTCATGCCGGAGGGTGCAAGCCACGTCACAACTAGAGTAAAGGGCACGTTAGGCTATCTTGCACCAGAATATGCCATGCTAGGCAGAGCCACAGAGAGCTGCGACGTGTACAGCTTTGGCATACTTCTACTGGAGCTGGTGAGTGGGAAGAAGCCAATCGAGAAGGTAAGCTTGACCGTTAAGAAAACAATTACAGAGTGGGCACTGCCACTGGCTAAAGAGGGAAAGTATGAGGAGATGGTTGATGAGAAGCTTAATGGGGAGTTTGTGAAGGAGGAGGTGAAGAGGATGGTGATCGTGGCGCTTGTTTGCGCTCAGAGCGAGGCGGAGAGGAGACCGGCCATGATGGAGGTTGTGGGGTTGCTTAAAGGGGAGTTGATGGAGAAGATGGTTGCTTTGGAGAATGGTGATTTGTTTAAGGTTGAGAGAAGTGATGCTGTTAGAGATGAAGTTGAAATCGTGAATGAGAGTGTCTAG

Protein

Gene

>g270725.t1
ATGAAAATGGGAATTAAGTCTTGGTTGTGCTGCGGTGCTGATTCGAACAGGTGTCTTTTATGTTTTTTATTCTTTTCTTTTGTTGCTGATTTTGATTGCGAGGGTATTTAGTGACAAAGTTTTGATTTTGGCCGCGCAGGAGTGAAAAGGGGAAGAAAAATTCATCTGGATGGAGGATATTTTCCCTTAAAGAGTTGCATTCTGCGACGAATAATTTCAATTATGATAATAAGTTGGGTGAAGGAGGTTTCGGTAGTGTTTATTGGGGTCAACTATGGGATGGATCTCAGGTTTTGGCTTTGTTTTCTAATGATCTCTTTTCTTGAATTTGTCGATTTATTTTAGTATTTAGGTGCTTTAATAATGTTAGAATATGGAATATGTCTTGTGTCTATGATATAGGTTTTAATTTTAGGAAAGGAGTTGTCAACTATTTGTATGACTATTGAGGTTCATTCTTGTCGTATAACTGATTGACGGCGAGATTAAAGAGTTTAGAATATGAAACTCAGTGACAACGCAAATGTGATAGATAACGTACACAAACTGCAGCTGGTCTGTTCATGTTTATATTACTTAGATTGAAGAATCAATTTTGCACCAGTATAAAATTAAAAGTGAATTGTTTCCTATAGATGTTTTTCTTAACCCTTTCTTCTTCCTCCTTCTCCTCCTTTTCAATAGCGCAATGACATAGATTTTAGATGTATCTGAAATGGGCTCTATATGAGGAGTACAATGGATGTTCAGTGAGTGCTGAAAATGGATTAGGATGGCCACTTAAAAGTTGTAAGATCAAATCCACAAACAATAAAATGTGATGCATTTCTGCATCTCTGTCGTTCTGCGGCCCAAGAACGATATATAACCAAAAAGTCTAGGACCTCCAAACACAATGAAACCTAATATTATCGCTAGCGTCTTCAAAACTTCAAATTCTACCATGTTATCTAGACTAGGAGTTGAATTACTTTGCTACCATTAAAATAAAAAGATTGAACATCATTAGCATGATATAAAAACGGGTAATAATGCGAGTTTGATTATCATCATATTTTCCGTGGTGTGTATTCACTGCATGAAGTACTAATCTGATACTGGACCATTAAAATAAAAAGGTGGGAGAATTTAGGTAACATGTGAGAAATTTGTAACATACTCCAAATTTATTGTTTGATTAAAAGATTATAAACTCATGATTAGTCATGAACACATTGAGCATGCCTACATTATATATCATTACTTTTGCCTATATGCTTCATTATGTCACATAAATTTGATAAAGAAGAAGAAATGGAAGAAGAAATGAAATTATTACCGACATTCTTGCCTGGCCACTTTATTCCTCTACAGGACTCCCCTGATGAAAGATAACGTTATATGTTTTCATGAACATATTTTGTGTAGGCAATGATTTATAATCTCATCCCCCAAGAAGTTATGAAACAACCAAATGCCATCTTTAATATTTGAATCTGTGATTATTTTTAAACGGCAAGTGTCAAAATGTAAATTAGTATATGCTTGCATTTACTAAACAGTGCCAATAATCTGAAGTCTAAGGCTGTATATATTTTCTCCATAGCAGTTATATTCTCACTTTTACCATATATTCCATTTGTGTTGGTGCAACATTCGCACATGTCTATATTTGTTACACCTATTGTTGTGCTTACTTCATTCAATAAATTTACTCATCTATTAACAGATTGTTATGAGCTGTTAAGCTTTACACATATTACATATTAACATGTTATGATTGCATTCAGATTGCTGTTAAAAGATTAAAAGTTTGGAGCAACAAAGCAGAAATGGAATTTGCGGTCGAGGTAGAAATCTTAGGCAGAGTGAGGCATAAAAATCTGCTCAGTTTGCGTGGATATTGTGCTGAAGGGCAAGAGCGATTAATAGTATATGATTACATGCCTAATTTAAGTTTACTATCACATCTTCATGGCCAGCATTCATCTGAATGCCTTCTAGATTGGAGCAGGCGCATGGCAATTGCCATAGGATCTGCTGAAGGCATTGCGTAAGTACACATAACCCTATTTGTCTTTTCAGTAAAATAAATTTTCAAATTTCTAAATTCAATTTTAAATATAATTCTTAATTTCCCTTAATTGCTTATAGTTTTACTGCCACCGCTATATTATAAGTTTCTTGACTTTCATAATGTTCACATAGTTTTACCACAGCATTTAATGTGTTAGGTTTTGATATGATATGTCATACTAGTAGAAACTTGCTTGCCTTTACAAATCTTTTGCTAGTATAACAATAAAGCAAAATACTAAGTAAAAATCTACATCAAATAATAACATGCTGGATACATTAACATAGTGTGCAATTAAAAGAAGTTCAAGTGGTGATTTGATGAAATAACTTGACAAAGTCATGTGGTTTAGTGAATTAGTTAATGCCATTTTCAAATTACTTGTTGAAAAGACTTCATATGAAACAACATCCTAGAATATTAAAGGGCTAATAAAAACTACATATTACTACTCCAAATATAGTTTTACTATAACTATTCTACTTTCCTTCCAATTTGGGAAGAGTCACAGTTTACCGTTCCAATTTTTTACTAGTAAACCGTCTCTGAAGTTTGAGGGTCATTTCAAAATACTGAATTCTCTTGTTTATGAAATGTTTATGAATATTACACGAGAGAACTAATCTTTGTACTAATTCCATCTGTCTTTCACAGTTACACATCTAATATATCATAAGGACATCTCTTACATGAGTCTAGTTTTAGGACTATTTTGAGGGAAAGGTCTTACATTCAAGAAGAACACTTATTTCGATATTTCAAATGTTCAAATTCAAGACCTCTAGAACCAAGGTTTACTAGTTTAGAAACCTTTATCACCTGAGCTGGTGATCCTTCATATAGACGTAAGACCATTTTTTCTCTCTTCATTTTAGAATAAAAGTGTTACTTTATTCAAGTAAAACGCTTAGTTTGATATATCAGATGTTCGAATTCAAGACCTATAGAATCTTAATCTAGAGCATTCTATCACTTGTCATTTAAAATGCTAAATCCTATGCAGCTATCTACACCACCACGCGACGCCCCACATAATCCACAGAGACATAAAAGCAAGCAACGTGCTACTAGACTCCGATTTTCAAGCCCGAGTGGCCGACTTCGGGTTTGCCAAACTCATGCCGGAGGGTGCAAGCCACGTCACAACTAGAGTAAAGGGCACGTTAGGCTATCTTGCACCAGAATATGCCATGCTAGGCAGAGCCACAGAGAGCTGCGACGTGTACAGCTTTGGCATACTTCTACTGGAGCTGGTGAGTGGGAAGAAGCCAATCGAGAAGGTAAGCTTGACCGTTAAGAAAACAATTACAGAGTGGGCACTGCCACTGGCTAAAGAGGGAAAGTATGAGGAGATGGTTGATGAGAAGCTTAATGGGGAGTTTGTGAAGGAGGAGGTGAAGAGGATGGTGATCGTGGCGCTTGTTTGCGCTCAGAGCGAGGCGGAGAGGAGACCGGCCATGATGGAGGTTGTGGGGTTGCTTAAAGGGGAGTTGATGGAGAAGATGGTTGCTTTGGAGAATGGTGATTTGTTTAAGGTTGAGAGAAGTGATGCTGTTAGAGATGAAGTTGAAATCGTGAATGAGAGTGTCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265609.1	5.8e-164	PTI1-like tyrosine-protein kinase At3g15890
Swissprot	Q9LSC2.1	6.8e-117	PTI1-like tyrosine-protein kinase At3g15890
trEMBL	A0A5P1EW76	4.2e-164	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G52540.1	64.27	2e-129	459		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g270725	AT1G52540.1	347	121	3	3	348	1	345	64.27	2e-129	459
g270725	AT3G15890.1	341	133	2	10	349	7	346	60.41	7e-122	433
g270725	AT1G70460.1	317	155	4	26	338	336	646	47.95	1e-81	300

Ortholog group

Species	Genes
Allium cepa	g270725.t1; g315240.t1
Allium fistulosum	AfisC3G08498; AfisC6G02802; AfisC6G02839
Allium sativum	Asa2G07062.1; Asa8G03940.1
Arabidopsis thaliana	AT1G52540.1; AT3G15890.1
Oryza sativa	LOC_Os02g09359.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	44	310	150.7	4.4e-44

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04730	IRAK1; interleukin-1 receptor-associated kinase 1	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network