result

Gene information

Detail information of g271648

Location

Gene	Chr	Start	End	Strand
g271648	CHR5	231918112	231921443	-

Sequences

CDS

Protein

Gene

>g271648.t1
ATGTTTCAATATACATTAGATGAGAATGTGCTTGAACTTGTTGAACAGCCTGATGAAAATTTGGTCGTATCTGTTCCCAAAATTTCTGAGAAGATTGCAAGTGTTGGACTTGAAGATTTTGATTTTTTGAAAGTTGTTGGGCAAGGAGCATTTGGAAAAGTTTTTCAGGTTATGAAAAAGGGAACTTCGGATATATATGCAATGAAAGTTGTGAGAAAAGATAAAATCATTGAGAAGAATCATTTTGAATACATGAAAGCTGAGAGGGACATATTGACAAAGATAGATCACCCTTTTATTGTTCAGCTCCGATATTCCTTTCAGGTATGATGCTTTAAATTTTACCAGCTATATTTGTTTGTATTTTCTTTTAGATACCGTTACACACTTACACTTGCGCAAAGGTCTTACCTATGTGGCCTTGATCTTCATGTCCTGATTTTCATCCTTTAGGTAGCTCCCTGTAAGTTACATGTTATTGTCCCACTCTCATTTATTTGTTTGCAAAATGAAATACACTCCAGTATTGCACACCATAATGAAATATAATTGTTATTGCTTATTCCACTATTCAATGGCATCTATGGCCAAATGCTTGAAATGATTCAAATTTATTTTTTATTTTGACAGTCAACTTGAGCAGAATGTCAACATTTTAGAGATACCAAAGTTTGATTAATGCTAATGTACATGTTAGTTTATCTTTGTGTTATCCCATAGTCATTATTTGCTCTGGCGCCAGATACATTTCCAGCATATGGATTCTCTTTCTTTGCTATTATCGATCTATATTATTACTCTTTCAAATGCCAATTTACTAAAAAAATATTGCCTCGTTTTGTTCAATATATTTGAGTGCTCAAGTTGGTTACACACTGTGTTCTTCGTGTTTTGTCTTGACTCTTGGTATGTTAATATTAGTACTCATGTTTTGTGTTTTATATATGTAGACCAAGTACCGACTGTATCTTGTACTAGATTTTGTCAACGGGGGACACCTTTTCTTTCAGCTTTATAATCAGGGTTTATTCAGGTATTGACATTTGCACTGGCTCTGTGGCTTCTTCCTAATTCACTTGACATAGATTCATTGTTTTACTCTGTGAATTTATCTTACGGGTTTACGTTAACTATCTCAGAGAGGATTTGGCATGCATATATGCTGCTGAAATAGTGTCTGCTGTTTCTCACCTTCATGCATCAGTTCAACTATCACAAAAGAATATATATTACTTACTTTTAAATGATGTTTCTGTGACATTGTAAAATGATCATAGATCTGTTAAAGGCATTTCTCAAAGTTTAGAGTTTGGTGGTCGATTATTTACATGTATTCAAGCATTTGCTATTTGCTATTTGCTATTAATACGAATTGATTATGTATCACTCTACTGTCTACATAGACCCAGTGTTGTGTAAGCCATTAGAATTTGGAGCAGGTTTGTGATTCTTATAGTAAGTTCTTGAATGTCTTACTCTTGTTACTACTTTCTGTTACATTTTATTTTATTGATGCACAGATACTTTTATGGAGTCGGCCACAAAGTTTATATCTGGACACAATGATGTCTTGGCAGGCATCATAGCTATAAAAGGAGAAAGGTATACATGACTAGATTTATACACTGGTTATGCATTATAAGGAAGCAAGTTTGCATCTTCTTCTGATTTTTCTCGCTTCGTGTATCTTTTGTTCATATGCGCATCGTTTTGTTTCCTTTTTTTAAAAAAAGAAAAAAATATGCATTTCCTGAGTCTGCATTTCATATTTCTGTTTTACAAACAAGCCATTTCATTTTTCTTTACCAAACTCATCAAGTTTTTGTTGTTCACTGTTCCTTGTTATATAATTTCACCTCTGCTTTTGTTCACAGTTTGCATGCATTTGTCATAATTCATTCTCTCTATTTTTGCAAACATTCTCTCTGTTTTTTACAAACAAAATTTGCAGGCATTTGTTCATAGTTTGCATTCTCATTGTTTCATTACATTCTTTGTGCTTCTAAGTGTCTCATTGTGTTCTTACATTTGCATTTAGTTCTAAAGAAAATATACATTGCATTTGTGATAGTTTTAAAATTTATGAATTACATTTGGACTGTGCATTTACCTTTTCTTTTGCATTTCATTGCATTGCATTGGCGATAGTCTTCAAATCCTAAACTCCTTCCAACTGCAATCGTCCGCGACCACCCACCTCAATCATGAAACTCCGGAAAGCCCTGGTTGTCAGTGATTTGGTAGGCTAGTGGTTCTGTCGTTGGTTGAGTGTTGTTCCGGAATGATTGTTGAATTGTGTCAGTGAGGAGATTGAGATTGAAGTGGTAGGCGAAGAGGGTACTCTGAGTTTGCAGAAGTATGGTGAAGTGGGTATGTTGAAGAAGTTGTGCAGTATGCTGTAGCAGTGGGGGTTTACAGGCAGTTGCAAACATGGTTTGCTGGTGGGTTTGGTTGTGCACAGGGGAGGGGCAGCAATTGGTATATTGGTGGGTGATGCAGTGTAAGTAAGCAGAGGGTTTGCAGTTGTGTTACAGAGGAATTGGAAGGGTATTGGAATTTCAGTGATGGTCGCGGAAGTAGTAGGTGATTGAATGAGTAAAGGCAGTTAAGCGGTTAGTTTGGTGGCTGTCTTGAGTGAAACAAGTGCAGATATGCAGGCAGTTTTGAGTGTGTAGTAGTTTATATGTGAAGTTGAATTGTTTGTTGCAGTGATTTAATGTGATGTAGTTTGAGTGTAACAGAGAGTAGGGGTGTTTGGATGGGGTGGTGATGAAGTGCTGCTGTTTTGTTTAATGTGAATGTGAAGTTGTTTGGTTTGTAAGTGGGAAGACGGGCCCGAGGCAACTTGTGGCACATGGTAGAGGGACCTAATCATCCGACGATTAGTAAGCTGTAATTTTTCATATTAGTTTCACTATCATTCAGTGTTGCATTTGCATTAGTCAGACATTGTTATTTATGTTATAATCATTTCTGTATTTTTTTGTGTACTGTTTGACATTGTGTGTACATGACATTCTTACGTGCATCATGTTATGACATTATTACATCATTTATGTTCATTATATGGAGTTTGTTTATCTAATTTGTTTTTTTTTGATATTTATCTCTTTTTGTTGATGACAAAGGGGAGAAATATCTCATACATTTAGGGCGAGTCTTATATTTAGGGAAGTATTATTTTCTATGCTAAACATTTGTATAAGTAGTTGTCATCATCAAAAATGAAGAGAAAGTTAGAACCGAGTTTTGATGATGTCAACAAAATATACTAAACACTCTATTACTGCAGATTAAGGCATGGGCAAACAACTTATACAAATACATCATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274010.1	7.3e-37	serine/threonine-protein kinase AtPK2/AtPK19-like
Swissprot	Q39030.2	2.1e-33	Ribosomal-protein S6 kinase homolog 2
trEMBL	A0A5P1ED03	5.3e-37	Serine/threonine-protein kinase AtPK2/AtPK19

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G08720.1	82.93	1e-36	148	ATPK19;ATPK2;ATS6K2;S6K2	serine/threonine protein kinase 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
g271648	AT3G08720.2	82	14	35	116	135	216	82.93	1e-36	148
g271648	AT3G08720.1	82	14	35	116	135	216	82.93	1e-36	148
g271648	AT3G08730.1	82	18	35	116	129	210	78.05	3e-34	140

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	42	121	59.1	3.8e-16
PF01053.17	Cys_Met_Meta_PP	Domain	120	150	25.6	3.7e-06

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006417	P	regulation of translation
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0008285	P	negative regulation of cell proliferation
GO:0009266	P	response to temperature stimulus
GO:0009408	P	response to heat
GO:0009409	P	response to cold
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010608	P	posttranscriptional regulation of gene expression
GO:0010628	P	positive regulation of gene expression
GO:0045727	P	positive regulation of translation
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032268	P	regulation of cellular protein metabolic process
GO:0032270	P	positive regulation of cellular protein metabolic process
GO:0034248	P	regulation of cellular amide metabolic process
GO:0034250	P	positive regulation of cellular amide metabolic process
GO:0036211	P	protein modification process
GO:0042127	P	regulation of cell proliferation
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048523	P	negative regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051246	P	regulation of protein metabolic process
GO:0051247	P	positive regulation of protein metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04688	RPS6KB; ribosomal protein S6 kinase beta	EC:2.7.11.1	ErbB signaling pathway	ko04012
			TGF-beta signaling pathway	ko04350
			Apelin signaling pathway	ko04371
			HIF-1 signaling pathway	ko04066
			PI3K-Akt signaling pathway	ko04151
			AMPK signaling pathway	ko04152
			mTOR signaling pathway	ko04150
			Autophagy - animal	ko04140
			Fc gamma R-mediated phagocytosis	ko04666
			Insulin signaling pathway	ko04910
			Axon regeneration	ko04361
			Longevity regulating pathway	ko04211
			Longevity regulating pathway - worm	ko04212
			Longevity regulating pathway - multiple species	ko04213
			Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network