result

Gene information

Detail information of g272094


Location
GeneChrStartEndStrand
g272094Scaffold_60383:HRSCAF_4434695403988640-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020272208.10.0e+00lysine-specific demethylase 5A
SwissprotQ3UXZ9.28.2e-100[histone H3]-trimethyl-L-lysine(4) demethylase 5A
trEMBLA0A6I9S0030.0e+00lysine-specific demethylase 5D

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G63490.144.570.0 813transcription factor jumonji (jmjC) domain-containing protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag272094.t1
Allium fistulosumAfisC2G00021
Allium sativumAsa4G03916.1; Asa4G03917.1
Arabidopsis thalianaAT1G63490.1
Oryza sativaLOC_Os06g51490.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02375.14JmjNFamily8411761.35.4e-17
PF01388.18ARIDDomain17524037.42.7e-09
PF00628.26PHDDomain28633336.72.5e-09
PF02373.19JmjCDomain457573137.13.1e-40
PF02928.13zf-C5HC2Domain66671754.31.2e-14
PF08429.8PLU-1Family786107066.32.3e-18
PF08429.8PLU-1Family1087123564.77.4e-18
PF08429.8PLU-1Family1257144230.91.4e-07
PF00628.26PHDDomain1741178534.01.8e-08

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0001046Fcore promoter sequence-specific DNA binding
GO:0001047Fcore promoter binding
GO:0001067Fregulatory region nucleic acid binding
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0003712Ftranscription cofactor activity
GO:0003713Ftranscription coactivator activity
GO:0042393Fhistone binding
GO:0003824Fcatalytic activity
GO:0005488Fbinding
GO:0046872Fmetal ion binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006464Pcellular protein modification process
GO:0006482Pprotein demethylation
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007623Pcircadian rhythm
GO:0008150Pbiological_process
GO:0008214Pprotein dealkylation
GO:0008270Fzinc ion binding
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0010629Pnegative regulation of gene expression
GO:0010639Pnegative regulation of organelle organization
GO:0044212Ftranscription regulatory region DNA binding
GO:0016043Pcellular component organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016569Pcovalent chromatin modification
GO:0016577Phistone demethylation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0031056Pregulation of histone modification
GO:0031057Pnegative regulation of histone modification
GO:0031063Pregulation of histone deacetylation
GO:0031064Pnegative regulation of histone deacetylation
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031399Pregulation of protein modification process
GO:0031400Pnegative regulation of protein modification process
GO:0031490Fchromatin DNA binding
GO:0032268Pregulation of cellular protein metabolic process
GO:0032269Pnegative regulation of cellular protein metabolic process
GO:0032451Fdemethylase activity
GO:0032452Fhistone demethylase activity
GO:0032453Fhistone demethylase activity (H3-K4 specific)
GO:0032501Pmulticellular organismal process
GO:0032922Pcircadian regulation of gene expression
GO:0032991Cmacromolecular complex
GO:0032993Cprotein-DNA complex
GO:0033043Pregulation of organelle organization
GO:0033044Pregulation of chromosome organization
GO:0034647Fhistone demethylase activity (H3-trimethyl-K4 specific)
GO:0034648Fhistone demethylase activity (H3-dimethyl-K4 specific)
GO:0034720Phistone H3-K4 demethylation
GO:0034721Phistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0035064Fmethylated histone binding
GO:0036211Pprotein modification process
GO:0043086Pnegative regulation of catalytic activity
GO:0043167Fion binding
GO:0043169Fcation binding
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043412Pmacromolecule modification
GO:0043565Fsequence-specific DNA binding
GO:0044092Pnegative regulation of molecular function
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046914Ftransition metal ion binding
GO:0048511Prhythmic process
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050790Pregulation of catalytic activity
GO:0050794Pregulation of cellular process
GO:0051090Pregulation of sequence-specific DNA binding transcription factor activity
GO:0051128Pregulation of cellular component organization
GO:0051129Pnegative regulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051246Pregulation of protein metabolic process
GO:0051248Pnegative regulation of protein metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051336Pregulation of hydrolase activity
GO:0051346Pnegative regulation of hydrolase activity
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065009Pregulation of molecular function
GO:0070076Phistone lysine demethylation
GO:0070988Pdemethylation
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090311Pregulation of protein deacetylation
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1901725Pregulation of histone deacetylase activity
GO:1901726Pnegative regulation of histone deacetylase activity
GO:1902275Pregulation of chromatin organization
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1905268Pnegative regulation of chromatin organization
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:2001251Pnegative regulation of chromosome organization
GO:0140030
GO:0140034
GO:0140096
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11446KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylaseEC:1.14.11.67 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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