result

Gene information

Detail information of g273767

Location

Gene	Chr	Start	End	Strand
g273767	Scaffold_60625:HRSCAF_443711	136236	137549	+

Sequences

CDS

>g273767.t1
ATGAAATCAAACATGATGCTCCTACTCATCACTGCTCTTCTACCACTCATACCCGCACAGCCATTCGACTACCCAACCGCAACCCCAGGCACGAAATGGACCAACACTCCCACCCTCAAACACACCATAAACTACCCAGATGGCGCAACGATCCGGGCCCTCCTTCTCAAAGGAAACCTCGGCCCATCGTTCGCATTCGGCTTCTTCTGCATGACCCCATGCACCTCCTTCCTCCTCTCCATCTACATCGTGCAAACCAACAGTGGCTCCGGCATCACTGGCCTCATGAATGCCTCCCCACAGGTCGTCTGGTCGGCCAACCGGGACCGCCCCGTCAAAGAAAACGCCACCTTGACCTTCTCCAAAGACGGCGATCTGGTCCTGCGCGACTCAGATGGCTCTCTTGCTTGGTCCACCAACACCTCTGCAAAGTCCGTGTCGGCCATGTCCGTAAATGGCATCGGCGAACTCGCCCTATTTACCATGTCGGGCGCTAAAGTTTGGTTATCTACAGACTACCCCACCGATTCTTTGGTTCTAGGACAGACCTTAAAGCAAGGGCCAAGGCTTACAGCTAACGTTTCAAAAACAAATCCAAGTACGGGTCTGATATATCTTAGCGTTGTGGATAGTGGGTTTCAGGCGTTTGTTGGTTCACAGATGTACTATGAGAATGTAGTAGCTACAAATACCAAAGTCAGCATGAGTTCGACACGTATGACGTTTCGAAATGGAAGTCTGGATATATTTGTTGGGGGTTCAAGCACACCGGTTTTAAGTATGGCTTTGCCGGTGGCTTCATCTGTTCAGTACATGAGACTTGACTACGGTGGTCATTTGAGGATATATGAATGGACCGGTGATTTTAGGTGGAAATTGGTGGGAGATGTGATCGATCTATTTCCAGATGATTGTGCTTATCCGACTGCATGTGGAAGGTACGCGATTTGCTCCAGCGGACAGTGTACGTGCCCTGTTGGAGGTGGGAAGGCTTACTTCAGACCTATTGTTGAGAGGCAACCCAACTTTGGATGTGCTTTGTTGAGAGGTGTGACTTGTAAATCAAAACAGCTTCTTTTTCTGAAAGACGTGGGTTACTTTGGTTATTCTGCTGCGACAGCAGATGCTCAGGGTGTTAGTGAAGACGGATGCAAGAAGCTTTGTTTGAACAAATGTGAGTGTAAAGCTGCGTTTTTTCAGTACGGAGGAAATGCTTTGAAAGGTTCTTGTTATTTGGTGTCTGAGGTGTTCACGCTAATTGATAACAGACCGGAAGTCACTCACTTCAATTCATCTGCCTACATCAAAGTTTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020588245.1	6.0e-126	epidermis-specific secreted glycoprotein EP1-like
Swissprot	Q9ZVA4.1	1.4e-18	Putative receptor-like protein kinase-like protein
trEMBL	A0A835V5P1	4.4e-110	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G16905.1	28.02	1e-28	124		Curculin-like (mannose-binding) lectin family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g273767	AT1G16905.1	414	247	14	40	436	40	419	28.02	1e-28	124
g273767	AT5G35370.1	365	220	12	83	425	77	412	25.75	1e-26	117
g273767	AT1G78850.1	342	212	10	103	419	90	418	26.90	3e-24	109

Ortholog group

Species	Genes
Allium cepa	g273767.t1; g428730.t1; g473895.t1; g509784.t1
Allium fistulosum	AfisC4G03037; AfisC6G00047; AfisC7G02380
Allium sativum	Asa0G01171.1; Asa0G01626.1; Asa0G02323.1; Asa0G02600.1; Asa0G03659.1; Asa2G06552.1; Asa3G02984.1; Asa3G02985.1; Asa3G02986.1; Asa3G02987.1; Asa3G02988.1; Asa3G04544.1; Asa4G01724.1; Asa4G03168.1; Asa4G03173.1; Asa7G07515.1; Asa8G00373.1; Asa8G05976.1; Asa8G05977.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g72810.1; LOC_Os04g23600.1; LOC_Os04g23620.1; LOC_Os04g23720.1; LOC_Os04g23760.1; LOC_Os06g35870.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	101	195	66.7	1.4e-18

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network