result

Gene information

Detail information of g275048

Location

Gene	Chr	Start	End	Strand
g275048	Scaffold_60790:HRSCAF_443876	14644	18870	-

Sequences

CDS

>g275048.t1
ATGAAGAATTTGGCTAGGTGCCTGTTAAACAGGCGTCTGTTGTGCCTGGTATCCAGGCGTCAGTCAACACAGTCAACAGGCGCCTAACGTGAACCCAAAGACAACAGTTTGCCCACCCATCATCATCTTTTCCTCCTAAATACCGTTTCTTCCTTCTTTAATCTTCGTTTTCTCTTAAAGATGTGTTCCAACTTCAGAAAAGCTACCATCTTCCTGATCCTCGTCATCTTCTTCCTAAAACCATCATCTTCATCCAACCCCAGCTTCATCTTCAACGGATTCTCCAACTCCAACCTAACCCTAGACGACTTCGCATCAATCACCTCCGACGGCGTACTCGCCATCACCAATGGCACGATCCGCACAATGGGCCATGCTTTCCTTCCCTACACTCTCGATTTTAAGTCGCCGTCAGGTAACAAACCCCTCTCCTTCTCCACCGCTTTCGTCTTTGCAATTGTTTCTGAAGCTTCGTACATCAGCGGCCATGGCTTGGCCTTCGTCATTTCCAAATCCAAAAACTTCTCCTCTGCCTTGCCTAATCAATACCTAGGGCTCTTGAACCTAAAAACCAACGGCACCTCTGAAAACCACTTGTTCGCTGTAGAATTCGATACACTAATGAACTCAGAGTTTCATGACATTGACAATAATCATGTTGGAGTTGATGTTAATAGTTTGAGTTCTATAGCTTCTCACACTGCTGGGTATTACGACGACGATACGGGTATGATTACTAATTTGACATTAAGAAGTGGGTTGCCTATGCAAGCGTGGATAGATTATGATGGAGAAAGCATGAAACTTGATGTTACCATGTCTTCTTTCTTAAAACCCAAACCAAAAAAGCCACTTATATCCACCATTGTTAACCTTACAAATGTAATAACAAACGGCACAATGCACGTTGGTTTCTCTTCAGCTACCGGCTCTTTCAAATCGCACCATTTTGTCACTGGATGGAGCTTTAAAATGAACGGTGTAGCTGAAGCACTAGACTACAAAAATCTTCCTTCAATTCCTAGAATTGGTCCTAAGAAAAACAAACATGTTTTGGCTATAACACTTCCTATTGCATTTTGCTTGCTTGTGCTATCGATTTTCGTAACACTTGCATTGATAAAGAGAAGAAGAATGAAATATGCCGAGCTGGTAGAGGACTGGGAGCTGGAATACCGACCACATAGGTTCTCGTACAAAGACTTATTTCAAGCAACAAAAGGCTTCAAAGAGAAAGGCCTATTAGGCACAGGAGGCTTTGGAAGAGTTTACAAAGGCATGCTGCCAAAATCAGGCGTAGAAGTCGCCGTAAAGAAGGTTTCACACGAGTCAAGGCATGGCATGAAGCAGTTTTTGGCTGAAATAGTAAGCATTGGCCAGTTATGTCATCGAAATCTAGTTCAACTTTTAGGCTATTGTAGGAGGAAAGGAGAACTTCTTTTGGTCTATGACTTCATGCCTAATGGAAGCCTCGATAGGTTCCTGTACGATAGATCAAAACCAGTGTTAACGTGGGCCCAGAGATACCATATAATGAAAGGAGTTGCTTCCGGGCTTTTGTACTTACACGAAGACTGGGAGAAGGTGGTGATACATAGAGACATTAAAGCTAGTAATGTGTTATTAGATGGTAAAATGAATGGAAAACTAGGAGATTTTGGGCTGGCTAAGTTATATGACCATGGCTCTGATCCTCAAACCACACATGTGGTAGGAACTTTAGGGTACTTGGCTCCCGAGCTAGTGACCAATGGAATGGCGACTACTGCGACCGATACTTATGCTTTTGGAGTGTTTCTTCTAGAAGTTTGCTGTGGTAAAAGGCCAATAAATCCTACTGCACAAGGCGAGGATGTGGGACTAATGGACTGGGTGCTGGAGAACTATCAGAAAGGGGAGCTTCTGGAGAGTTTGGACTCGCGGTTGAGAGATGAGTATAGTGTGACTGAAGTGGAGCTGGTTTTGAAGCTGGGGTTGATGTGTACGAACCCAGATCCGGAAGCCAGGCCTAGTATGAAGCAGGTGGTGCAGTTTCTAGAAGGCGAAGCTGTGATGCCTGATTTGCCTGAGAGTTATATGATCTTGAATACGTTGAGTCCGTTTCAGGGTGAAGGGTTTGATGAGTATTTCATGAGGTCGTTTTACTCCGGGGCTACTATTTCAGGCATATCTGGTGGTAGATGA

Protein

Gene

>g275048.t1
ATGAAGAATTTGGCTAGGTGCCTGTTAAACAGGCGTCTGTTGTGCCTGGTATCCAGGCGTCAGTCAACACAGTCAACAGGCGCCTGTTGAACAGGCTCTTGGTTTTCAGACTATTGGCCTCATTTCTGTTAGAGAAACGAGGCATACAACATTTCGGATTGAAAAATCTAATTTTCGCACTCCGAACTGTTGGAGATGTTCTTATATTATGTGTATTCTAGTACAATGAACGATATGTAGCTATTGTTTTATTATAATAATAGTTTATATTATATGCATATATACAAATGCGTTTTCACTGTTTAAAATTACTCTTTGTGATCCTATTTTTTGTTTCTGTACTTCTACAATCGAAACGAGTTAGACTTAAATTTTATTTTATGTCTTCAAATTTATCAATTGACAATGGATATGATAATATATGATATTTGTTAAGTATTCGTTGATATTTAATATTCGAAAATAAATTCGAATACGGAAGCGGGCTTGACACTGTCTACGTATAACGATATTCATCGACAAACCTAAAACCCATCATTTAGTTTGTGCGGCTGTAAACAACAAAGTTATAAGCGGATCCACTATTTCATATCGCAAAGTCGTAAAAGTGCAGTCAAAAAAGTGTTAATCACATTAATTGAGATCTAACAAGTTTTTAGTGAGACTATAGTCCATTATAAGTTATGTCTGTCAGGGCCGGCGATTGAACATCTTACCTCATGGCAAAGTAGTTGAAGCGCTACCAATCAAACTGCATAGCCCATTAATGACACTTGGTGATGCGTTTTTTATTTAAAACATATTACTAGATATACAACCTTTGCTCTCTGGGGGGATCGTTTTATTCGGCAGTCTGGCTAGTCTATCCCTAAAACCGTGCCTGATGTCGGGCAAGTATTAACCGCTTTATTAATACTATGGACGTTTTTGTGGTATTTTTACAATAGCTTTGATCCAAAATTGCAATATCTTCTCTTTGCTTCTTTAATATACAACTTTCTCCAAAGATTAGCCACAAATTTATTCCCATAGAGTAAAAAAGTGTTGTTATTGAAATGGAACTCGTAGATAAGAAGATAACTAAACATCTACGTGTTAGCCACAAATCTATGCTCAGAACCTTTTCTGTCGGCTAACAAAATCGACGTTCCAAGTCAATGCCTAGCACAACAATTCATATCGACTCCTCTTTAGTCTTTTAGGTACAACTAAGAACCTTATACTGCCATTTTGCATCAATCACTGTTAAATGCCATTACACTTTTTTTTTTCGTCTTAACCATTGATTACAAGTGATGTGAACGTTGAATGAAAAGTTTGTTCAAAGTGGTCACTACAGCTTTCCACTGAGATATTTGATGAAATGAATGCATCATTATCTCCTAAGCATTCCTACACAAATTGCTAACTGAGTATACAAACGTGCACTACATATATATAGTTTTATATCAGAACGCTCATGAATTAAATTTAAATTTAGATAACTAACATATACAGAATTATCTGTCCGGGTATCGACTATATCTCATTTTTGCTACATCTTAAATCCTTTCTGTTTTCAATCATACTGTCCGACTTAAACAGTTATATTTTTTCTATCATTACACTTCGTTCTACTATTCAATTCAAAACATGAGGTTGAAATCGAAGGTTTTGAGATGTAGCAAAAACAACATATAGTCGATCATTGATGTGTGTGTATATCATAAGGCTCGGCTGCACCTTTAATACGATTTTAAGAACATATTCTCATTTAAATAATAGAACCAAATGACAAGAGACAAACTATAGTTGTTTAAATGGAAATACATAGTTAAAATTAAAGGAAATGAAATGCAATCAAAATAAGTAGACATTTATTGCTATATATATAAATCCGAATGCGGTGAAAATTAGAAGATTATATATACATTGTACATGTCTATGTGCAAAATGTACATATGTACTGGTATGTATATGTGGGCATGAGCGGACGCATATACTTTCAAAATCGGTGCAGTATACCTTCCAAATTTCTTAAGCAGTGGTCCTTATTTTTGAATAACTCGGTCAAATCGCGTTGTCGTCACTCACCCAACTTGGAATAAATAGACTAAAATCAACAATTATCATTGTCTTTCTCTTCTAGAACGTGAACCCAAAGACAACAGTTTGCCCACCCATCATCATCTTTTCCTCCTAAATACCGTTTCTTCCTTCTTTAATCTTCGTTTTCTCTTAAAGATGTGTTCCAACTTCAGAAAAGCTACCATCTTCCTGATCCTCGTCATCTTCTTCCTAAAACCATCATCTTCATCCAACCCCAGCTTCATCTTCAACGGATTCTCCAACTCCAACCTAACCCTAGACGACTTCGCATCAATCACCTCCGACGGCGTACTCGCCATCACCAATGGCACGATCCGCACAATGGGCCATGCTTTCCTTCCCTACACTCTCGATTTTAAGTCGCCGTCAGGTAACAAACCCCTCTCCTTCTCCACCGCTTTCGTCTTTGCAATTGTTTCTGAAGCTTCGTACATCAGCGGCCATGGCTTGGCCTTCGTCATTTCCAAATCCAAAAACTTCTCCTCTGCCTTGCCTAATCAATACCTAGGGCTCTTGAACCTAAAAACCAACGGCACCTCTGAAAACCACTTGTTCGCTGTAGAATTCGATACACTAATGAACTCAGAGTTTCATGACATTGACAATAATCATGTTGGAGTTGATGTTAATAGTTTGAGTTCTATAGCTTCTCACACTGCTGGGTATTACGACGACGATACGGGTATGATTACTAATTTGACATTAAGAAGTGGGTTGCCTATGCAAGCGTGGATAGATTATGATGGAGAAAGCATGAAACTTGATGTTACCATGTCTTCTTTCTTAAAACCCAAACCAAAAAAGCCACTTATATCCACCATTGTTAACCTTACAAATGTAATAACAAACGGCACAATGCACGTTGGTTTCTCTTCAGCTACCGGCTCTTTCAAATCGCACCATTTTGTCACTGGATGGAGCTTTAAAATGAACGGTGTAGCTGAAGCACTAGACTACAAAAATCTTCCTTCAATTCCTAGAATTGGTCCTAAGAAAAACAAACATGTTTTGGCTATAACACTTCCTATTGCATTTTGCTTGCTTGTGCTATCGATTTTCGTAACACTTGCATTGATAAAGAGAAGAAGAATGAAATATGCCGAGCTGGTAGAGGACTGGGAGCTGGAATACCGACCACATAGGTTCTCGTACAAAGACTTATTTCAAGCAACAAAAGGCTTCAAAGAGAAAGGCCTATTAGGCACAGGAGGCTTTGGAAGAGTTTACAAAGGCATGCTGCCAAAATCAGGCGTAGAAGTCGCCGTAAAGAAGGTTTCACACGAGTCAAGGCATGGCATGAAGCAGTTTTTGGCTGAAATAGTAAGCATTGGCCAGTTATGTCATCGAAATCTAGTTCAACTTTTAGGCTATTGTAGGAGGAAAGGAGAACTTCTTTTGGTCTATGACTTCATGCCTAATGGAAGCCTCGATAGGTTCCTGTACGATAGATCAAAACCAGTGTTAACGTGGGCCCAGAGATACCATATAATGAAAGGAGTTGCTTCCGGGCTTTTGTACTTACACGAAGACTGGGAGAAGGTGGTGATACATAGAGACATTAAAGCTAGTAATGTGTTATTAGATGGTAAAATGAATGGAAAACTAGGAGATTTTGGGCTGGCTAAGTTATATGACCATGGCTCTGATCCTCAAACCACACATGTGGTAGGAACTTTAGGGTACTTGGCTCCCGAGCTAGTGACCAATGGAATGGCGACTACTGCGACCGATACTTATGCTTTTGGAGTGTTTCTTCTAGAAGTTTGCTGTGGTAAAAGGCCAATAAATCCTACTGCACAAGGCGAGGATGTGGGACTAATGGACTGGGTGCTGGAGAACTATCAGAAAGGGGAGCTTCTGGAGAGTTTGGACTCGCGGTTGAGAGATGAGTATAGTGTGACTGAAGTGGAGCTGGTTTTGAAGCTGGGGTTGATGTGTACGAACCCAGATCCGGAAGCCAGGCCTAGTATGAAGCAGGTGGTGCAGTTTCTAGAAGGCGAAGCTGTGATGCCTGATTTGCCTGAGAGTTATATGATCTTGAATACGTTGAGTCCGTTTCAGGGTGAAGGGTTTGATGAGTATTTCATGAGGTCGTTTTACTCCGGGGCTACTATTTCAGGCATATCTGGTGGTAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010943349.1	2.2e-234	L-type lectin-domain containing receptor kinase IV.1-like
Swissprot	Q7XUN6.2	1.9e-214	Protein SALT INTOLERANCE 2
trEMBL	A0A8B8J9J8	1.7e-236	L-type lectin-domain containing receptor kinase SIT2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G53810.1	51.52	0.0	677	LecRK-IV.2	Concanavalin A-like lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g275048	AT3G53810.1	660	304	8	82	727	20	677	51.52	677
g275048	AT2G37710.1	658	302	8	82	727	20	675	51.98	676
g275048	AT4G02410.1	665	299	11	82	727	22	674	50.38	644

Ortholog group

Species	Genes
Allium cepa	g106467.t1; g106468.t1; g106470.t1; g106476.t1; g191617.t1; g224385.t1; g275048.t1; g319721.t1; g381392.t1; g418238.t1; g418239.t1; g510386.t1; g510388.t1; g510393.t1; g529683.t1; g529692.t1; g96526.t1
Allium fistulosum	AfisC1G02402; AfisC1G02407; AfisC1G05247; AfisC2G09471; AfisC3G07176; AfisC7G01324; AfisC7G01327; AfisC7G01328; AfisC7G01329; AfisC7G01330; AfisC7G01910; AfisC7G05829; AfisC7G05837; AfisC7G05843; AfisC7G05851; AfisC7G05859; AfisC7G05861; AfisC8G03404
Allium sativum	Asa0G02289.1; Asa0G05071.1; Asa2G05950.1; Asa2G05955.1; Asa2G05958.1; Asa2G05959.1; Asa2G05966.1; Asa2G05967.1; Asa3G00476.1; Asa3G00477.1; Asa3G00478.1; Asa3G00480.1; Asa7G00161.1; Asa7G00177.1; Asa7G01880.1; Asa7G01888.1; Asa7G07561.1
Arabidopsis thaliana
Oryza sativa	LOC_Os04g44900.1; LOC_Os04g44910.1; LOC_Os07g03890.1; LOC_Os07g03900.1; LOC_Os07g04110.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00139.16	Lectin_legB	Domain	88	338	254.9	7.3e-76
PF00069.22	Pkinase	Domain	410	677	172.5	9.6e-51

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network