result

Gene information

Detail information of g283108


Location
GeneChrStartEndStrand
g283108Scaffold_61895:HRSCAF_444981269677297621+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrPKA64364.13.7e-66hypothetical protein AXF42_Ash009586
SwissprotQ8VZ20.19.9e-56Protein ARABIDOPSIS SH4-RELATED3
trEMBLA0A2I0B9812.7e-66Myb-like domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G33550.149.344e-64 241Homeodomain-like superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag283108.t1
Allium fistulosumAfisC2G08482; AfisC3G03913; AfisC6G06005
Allium sativumAsa6G00925.1
Arabidopsis thalianaAT2G33550.1
Oryza sativaLOC_Os04g32590.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF13837.3Myb_DNA-bind_4Domain179847.71.3e-12

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0002237Presponse to molecule of bacterial origin
GO:0002682Pregulation of immune system process
GO:0002683Pnegative regulation of immune system process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity
GO:0008150Pbiological_process
GO:0042802Fidentical protein binding
GO:0009605Presponse to external stimulus
GO:0009607Presponse to biotic stimulus
GO:0051707Presponse to other organism
GO:0009617Presponse to bacterium
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0042221Presponse to chemical
GO:0042803Fprotein homodimerization activity
GO:0043207Presponse to external biotic stimulus
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048583Pregulation of response to stimulus
GO:0048585Pnegative regulation of response to stimulus
GO:0050776Pregulation of immune response
GO:0050777Pnegative regulation of immune response
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051704Pmulti-organism process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071216Pcellular response to biotic stimulus
GO:0071219Pcellular response to molecule of bacterial origin
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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