result

Gene information

Detail information of g283643

Location

Gene	Chr	Start	End	Strand
g283643	Scaffold_61972:HRSCAF_445058	108868	117475	-

Sequences

CDS

Protein

Gene

>g283643.t1
ATGGCCCGCCGTAGAACTCGATCCAGAAATGAATCGGATGCAGATTCTGATTCTGACTTCGAAATCAACTCAGACGAAGAGCTGTCGGTCACCGACGAGGATGAAGAACCAATCGTTCCTCCCTCACCCGTGATCCGCCCCAGCATCGTCAAACGTCGAAATAAGCGACCCCGCAATACGGCTAAATCGGACCCTAACTTAGCGTGGAAGTTTCTGGAAAAGCAAAATGAGGAGTGGGTCACCGATCACATGACGTCGGAACCAAGCTACGAGGACGTCACGCTCCCCGAAACTCAAGAGCCATCGCCTTCGATTGTTCTGCCACTGCTAAGATTTCAGAAAGAGTTTTTGATGTGGGCGTTGAAGCAAGAGGAATCTGAAGTGAAAGGTGGGATATTGGCGGATGAAATGGGAATGGGGAAGACCATTCAGGCCATTTCTTTGGTTTTGACTGCACGTGATAGGAAAATTGCAAACATGGACGATGAATTTTGTAAGGCTACTTTGGTAATTTGTCCAGTTGTTGCGGTCATTCAGTGGGTAGGGGAGATTGAGAGGTATACAGAAAAGGGGAGTGCTAAGGTATTCAAATATTTTTTTTCTCTTCGTTTTCCCTTCATTTAAACTTGTGTGCTTAAGGCCATCAAACTCTTGTTGGACAAAGTGATTTGTAACCATTTGTAACTATTAAGCACTTTTTTCAGTACTCATTGAATAATGCTTATCACATTAAAAGCAAAAGTACAACCTTTTTATAATGAGCATTCGACAATCAAGCTTTTTATAGGAAGCAAACACATCTTTTACTATAGTTCACCTGTTTGATTGTTGCATATGTGTCATGCAACACGTTACCAAGGCAGTATGGTGACACATTGTCGATTTAATATTTGCAATCCACATATTTTTGTACACATTTGCATTTGCATTGGCAATGAGTACATGGGTGTACTATTAGGCATTCACTTCCATTGTTCAGAAATGGTGATGGTATAACAGCTAGATCTGTGCCAATCTTTATTTCCCAAACACTGGTAAACTAAAATAATTCATCGTTTCCTTTTTATTTACTACTAAAGTTGGTTAAGACTTTGGAGTTGAATTGGGGATATCATAGGCCTGATATGCTATATATTCAATCTCTATATTACCATATAGTGAGTAATATTAGCTATATTAGGCCGAGCCAGTCCTAAGAATTATGATGTCCAATTTGGTTTTATGAATGATGCTCTATGCGGTATAAGTTGCTCAAAAACCAGTGAAAAACTCTTATTTATAAGAAATATTTTTTTTTAGTGTCCGAGTCCGGATCGGGCTGCAATTGACGAGACATGATGAGCAAAGCTATAGAAGCCAGCGTTTCAAATTTCAAGTCAAACCGAGTTCGTACGCTCAAGATATGATCGATACAAGTTAGAGAGAATACGTTGTTCGTATCCATCAGCGTTCGTATCGGTCCGTGTTCGAATCGATACCATTCGAATCCGTCATTACAGGGTAGCCTCATTCCATTCGAATCCATCAGGTTCGAATCCATCAGGAGTTAGTCACTTCAAACCGACCTCTGTTCGTATCCATCGGTTCGACTCCATGTTATACAGTTTATATATCAATAGGTACCTAATACTTTCATGAACCAACATTGCAAATAAGAATTAAATTCATATTTCACAAATTTGTTGCAAAAAAACAACAATCAATTCTATTATTTGTTAAGAGACCCTCTCAATGATTCAACCGTCTCTTCATATTTTTTTCTGGGTTTTTTTCCATTAGAACTTCATGACGATTGTTTTCTCGTAAAAATCATGATATCAAATATGACTTGGTTGCAAATTAACTTTTATTTTTTATCCAATTCCAATCTCAATTTGGATATATGATTCTCTGTGTAAAAAATATTTATATTTACGTTAGGAAAAAAGTATACGAATTGTTAAACAATTTTAAATATAAATTGAGTCAAACTATAATTCGTTTATTTGAAAGATGTTAGATTTGCTACAACACAAGAAAACTATAAATATGAATAAAATTAACTTCTTTCAACAAAATCAAAATTTAATTTTTTATATATTAGTTTGCTGTTAAAATCCTTTTTTTCGTTAAATTCCTTAATGAGATGAAAGCCAATTACACCATTCATCAAACTTTTCAATCCCAAATTTACCAATGCTAGTCAGTTAGTAATAACTACTTATAAAATTAAAAAGCTAAAATGCAAAATCTATTGAAGTAAAAAAGGAAAGGGTCTTACATTGTAAAGAAAAGAATTGGATGGTGAATAACGAAGAATGGAAATTATATTGAAACTGTGAAATCCACCGATCTTCTAGTTTACTCCATCAAATTCATCCATGACATTTCTGCCCGTGTCACTGCTTTCATTTCTTTGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCCCCCTCTCCCTCTCTGTTACGAGAATTGGATGGTGAATAACGAAAAATGGAAATTATATTGAAACTGTGAAATCCACCGATCTTCTAGTTTACTCCATCAACATTCATCCATGACATTTCTGCCCGTGTCACTGCTTTCATTTCTTTGTGCGCTCTCTCTCTCAGTGAATGGATATCGGGCTTGAAGTTTTAATTCGTTTTACCACAACACACACACACAATGGAAAATAAATAAATGACGCCCCTCAAAATTTGATGCTCAGGTCCTGTTTGCACTGGACTAGAACCGGCTTTGACATTAGGCTTGATATGTTACCATGTATCGTGTATTATCGGGCTATCTCCATATTATATGTTGAGTAGTATTATATACATTACTTGATACGGTATATAGCGAGTAACATTAGGCAATCTCTAACTTGAAAATGAAAACACTAAAATTAGTTCTATACGTTATGAAATATTCCAAATATAATACTGCAGTTTTGATGCTTTCTAATTTCTACTAATTTCTTATCAAGGTGCTGGTATATCATGGGCCGAAGAGAGGAATTGCAGAGTATGATTTAACAAAATATGATTTTGTGATTACAACATACTCTACAATCGAGGTTGATTATAGGAAGAATATAATGCCAGAAGGGGAAGCGTGTATGTGGTGCGGGAAGAAGTACAGTGTGAAGGGAATGAAGATTCATTTGAGATATCACTGTGGGCCAGATGCAAGAAAGACAACAAAGCAAGCAAAGACAGAAAAGAAGACAAAAATGGATAAAAATAAGGGTTATGCTGAGAAAAAGAAGAAGGTAGACAAGATAAAACAGGGGGATAAAAAAGTTGAGGAGGCTGAGAAAGGAGAAGAAGGAATGAGGGGTGTGTCAATTTTGCATTCAGTTAAATGGAAACGGGTTATACTTGATGAGGTAAGTGTTGATCAATATCTTGGATTTGTAAATGTAGACATGTGACTTTTAGTGTACTTGAGTTTATTGCTCTGATTATAATTTAGTTATAAAAACGGTTTATGCGATGTTTAAGAATATGAAGAATCTTTCAACTGTTGATTTAGTTACAAATAAACTAATGGAAACCGTCGTTTTATAGACAATATAACATATTTGGAGGAATATTTGTCGATATATCACATCTGAAATGGTAATTTTCTATTATCTACTATATATGCAAAAGAAATTGGGTGGATAAGGATCTACAATGTCTCCTGCAGTCACCTCTATACTATCATTTCCAACGCTTTGTTATCATCATAAATACCGAAATATCTCACAGATGCTTTCTTCCTTTCAATTATAAGTTTGCCCACAATTTTATATCCTCGTAAATACACAAATCTCTCGCAGCCACTTTTTCCCTTCACTTATGAGTTTGCTTACAGTGACGTATGTATATGCACCTTGTGCGTGTCATTCTAGTATTATGTATAAACAGATATGACTACCTTAGGAAACTTTCAATACTTATTTTATTTCAGTAATCCACTTGTGAAAATGGAGTTTGATGCCATGAGTTTAGAATTGAGATCTCAGTTTCAATTGAAGTGTTAATCACCTGCTGTATTATTATGCACGAGACACTGAAGCATTTTAAACTCTTATATTGCCAAGAGATATCAAATACAAGCTTGTATTCTTGATAAGAGCCATATGATTTCTATAAATGAACTTCTGTAGCTTTTCTCCCTTTTTCATGACAAACGTCGGAACACATCCCTTCATAACCAGAAACCTATCACGTTTACAGGCTCATTTTATAAAAGATAGAAAATAGCAACACAGCAAGGGCAGTTTTTTGCCTTAGAATCTCAATATAAGTGGGCTTTAAGTGGTACTCCTTTGCAAAACCGAGTCGGGGAACTTTATTCACTGGTTAGTTTCCTTTAATGTCTATTGGCTTCTTAGTTGATGAAACCTGTAAGTTAATATGATGTCTACATTTTTCCAGATACGTTTTCTTCAGGTCTATCCTTATGCCAATTACTTCTGCAAAAGCTGTGATTGCTGTGTATTTGATCATGGGTACGTTTGTCTTTCTCTTGGTATGTCGTTATAGTTTATTATATCCATTCTGTTGTAATGTATTAATTACATCAATATCTTAAATAACAAATACATCCCATTTAGTTAGAAATGTACACGTATCTGCTTGCTTGGTATTCATTTTTTCCTGTAAAGATTCCGATAGACATGTTATACACTTGACATTACAGAGATTCTACAAGCCGGACTTGCTCCAAGTGTTCTCATTCTGTGACTAGGCATTTTTGCTGGTGGAATCGAGTGAGTTCTGTTGAATCAGTTATCATTTCTGTTTGTTTTCCTATTTTTATTATCTTGCGATAGTGAACATTACAGTTTATCGGTGAACTGATTTTGCTAACTGTTTATCGGTGAACTGATTTTTGTCTAACTGATCTGTTTATCGGTGAACATTACAGTACATCAATAGACCAATGCAGCAAAATATTGATGATAGTTCCACAAGAGCTATGATTTTGCTAAAAGGCAAATTACTCAAAAGCATAGTGTTGAGGCGTACTAAGAAAGGGAGGGCTGCAGATCTTGCTTTACCTCCTCGAATTGTAAGATGTTAAACTGCTATGTGAATATAAGATATGCATGCATCGGCATCACAGTAGTTTGAGATATAGCTTTCGTAAATTGATGAGCTGAACAGCATGCTCCCATTTCCATCACAGGTAAATATGAGAAAGGATTATCTGGATGGAAAGGAGAAGGAATTCTACGAAGCTATGTACAGTCAAAGTCAAGTTCAGTTTGATGCGTATGTTTATGCATTCTCTTGTTGTCCGTATATCTTACTTGCAGCAAGCTCTAATAGTTGAGAATATTCGTATGCTGCTGCATGAAAATGCAACAGTTATTTAACTAGTTCATTTAAATTTATTTTTGTTGTTCATTGCTATCCAAATAAGGAAGACTGACTTATACCTGACCCAACCTGATAATAAAATGTAAACTAACAGTAATTTTTAATATCTGCACATTTGTAAATTATGTATCTGATATTCGTACAGAGTTGTGAAGTGTCTGATTTTACCTTTGTATTCATCAGATACGTTGGGGCTGGTACCTTGATGAATAATTATGCCCATATATTCGATCTCCTTACACGGTTAAGACAGGTAATTATGAACTGCTAGTATCTTTACAAGCAGCAGCAGAAGTGTCTCAAACTTCTGATCCTCACGATTAAATTTCTCCATAGTTTATCACTTAAAGCTATTTATCACTCATGTCAGGCTGTAGACCATCCATATCTTATTGTCTATTCTAAAACTGCTGGGTTAGTCAAAGAGGTTGAAGAAAATGCTGCCCCAACTGTATATGATTGTGGCATCTGTCATGATGCAGCAGAAGAAGTTGTGGTTAGTTCCATATCTATTACCCTTCACATGTTTAAACTTGTAGTTGAGCGATGTATCATTGACTGTACATTTTGATCCTTCCCAATGGTTACAGGTTACCTCTTGCAGTCATGCCTTTTGTAAGGCGTGTTTGATCGATTTCTCCACAAGCTTAGGGAATGCATCTTGCCCATCATGTTCAAAACCATTAACTGTTGATTTGGTTTCAAACCATTCTGGACAGAACAATGCTTCAACAGCCATCAAGGGCTACAAGCGTTCCGGAATATTAAACAGGCTTAAACTTACAGACTTTAAGACAAGCACAAAAATTGATGCATTGGTAAAACTCTATATGACTTTTAGCAAGCATTACACAAACCAGCAAACTTATTTTAGAAGTGATGCCTTTTCTTCTGCAGCTTACATGAAAATGTGCTCTATTGTTATATAAAGCTATCAATAGCTATCATTCACCTGCGCAATTTTAAAATTATTCTTGTTGCCATGTGTTATGTTCTTCCTTTTTATAAACAAATATTTTTGCTATTATGTTTTTAATAGGGGGAGGAGATAAGGAACATGGTTGAAGGCGATAGTTCTGCTAAAGGAATTGTGTTCAGCCAGTTTACATCGTTTCTTGATTTGATTAATTACTCGTTGCAAATGGTACTCTAGTTTAAAACACTTGGTTATGAGTATAAAATTCATGATCTAGAATGAAAGTTGGCTAATGTATAGTGTTGAAATTTGCAGTCTGGCGTTAAATGTGTTCAGTTGGTTGGGAGTATGAGTCTTGCTGAAAGAGGGAAAGCTATAAATACATTTACTGATGACCCTGATTGTAGAATAATTCTTATGAGCCTTAAGGCTGGAGGAGTGGCTCTCAATCTCACTGTTGCATCACATGTCAGTTTTCTGTACACGCATTTGTTTAAAATCCATGATGTTTAATATCATATCTATTTCATTTTAAAAATTTAGTACTGTATGAGAAGCATCTATGACTTCTTCTGGTCGTTTAGTTGTACGGTAAAAAAACCACACTTGGTCATAGCTTAAGTAGTTGGATATATTAGTTTGGCAAATGATTAAGATCCCGTTTGGCAGTATCACTTACAGATTAACTTATAAGCTATTTTTTGTATTTTTAAGTTATTGCCAAATATGCTTCAGATGAAATCTATGTACTGAAGCTGATAGGTTTGTATAGGTTTTCTTAATGGATCCATGGTGGAATCCGGCTGTGGAGCGTCAGGCTCAGGATCGAATTCATCGTATTGGTCAGTACAAGCCAATAAGGTATTTCTTCTTTCTTACAACATCCTCGCGTGATTTTTTCATCTCATAACCATGATTATTATTAATGGAGAACTGTTAACCTGCTTCACAAATGTTATCGTAGAACAAAATCATTAATCATGTTTTGGAACTACAAATATACTTTTGCTTAGCAGCTAATGCTTAGAGGTATATCATAACATTACTATGTAGGCAAATTCTATTCCGACAACAAAAATTACTTTGTATACACCATTATTTTTTTAAGAAATTATATTACTAGATTACCCTTCTTAATTTCATCTCTACATAATCTTTCTTATATTCATAAAATTAGAACCTTAAAATTAATGAATTTGATGAAATCAGTACATTTTGATGAAGAAGTTAATGATTTTGTATCACAAAACCAAAAATATCGTTTAAGACAACTTTCATCATTAGCTGCTCAAAGTAGTTTTATTAATGCTCTAAATTTCTATTTTTGCGTGAATGATTTTTAAGACTGAATGAGGTAAGATGATGAAGATGAGAACAAGGGTAATCTTGTAAAAATAATGGTGTATAAGTAGTTTTTGGTGTATAAATAGAATTGCCATAAGACATGTCTTAGGGTCATGTTAATGAAATTCTTAGAAATAAATTGAAACTTACGCAAATTCAGGATTATAAGATTTGTGATCGAGGACACTATCGAAGAGAGAATTTTGAAATTACAAGAGAAAAAAGAACTTGTTTTCGAAGGGTAAGCTTTTTTTATGAAATAACCCCCATTTTTTTATGTATATCTTTGTTGCTTGTTACTGATGATTTCACAATTGATCTATAGGACTGTTGGCGATGATAAAGATGCTTTTGCCAAGTTAACAGAAGCAGACTTGAGGTTTCTGTTCCAAATCTAAGCTGAGTTATTGGTGATAAGGTAACATGTTACTGCTTATTTTTTATTAATCTCAAATACTATAGCTACTGTTCTATAGTATTTCATCTCTTTTTGGCGTGGATAGCTATAAAGAGTAACTATTTGCGAAAAATATTTTTCCTGATCAATTTTATCATTTATTTGGACTCCTGCAACCCAACTGTATTGGGAAACTTTCATGAGAATTAGAACCGAGAACTACGTACCCAAACCGATCTGAAAAGATCCAAACCCGAACCAAATTTGAAGGTGTCCGGTGTTAGACGAAAAATACCATAAAGCAAACCCGATCGGACTCGAAAGAGCCGACAAAATCCAAGCCATTTGATTCAGGTGCTTATTTTTGTCTTCTCATATGCAGGTAATGTGCTCCTCTTCTGTTCTCATGGTCTCAGTATTTGCTAATTGGATTTACATGTCTTGAAAATTGTAGATGCAACTTTTTGGCCTTTCAGCTTTAGACTTGTTATGTTCTCTTTGCTTTTGGGAGATGTGTGTATATATAACTACCTTGTCAACCCCTTTTGTCCTGGAAATGCATGAAATCAATAACTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256763.1	1.7e-262	LOW QUALITY PROTEIN: DNA repair protein RAD16-like
Swissprot	P31244.1	2.2e-113	ATP-dependent helicase RAD16
trEMBL	A0A1D1ZA37	6.2e-243	DNA repair protein RAD16 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G05120.1	55.72	0.0	824		Helicase protein with RING/U-box domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g283643	AT1G05120.1	752	308	12	30	764	59	802	55.72	0.0	824
g283643	AT1G02670.1	497	197	9	276	764	226	647	43.66	4e-102	369
g283643	AT1G02670.1	176	89	3	57	230	86	254	44.32	2e-33	141

Ortholog group

Species	Genes
Allium cepa	g283643.t1
Allium fistulosum	AfisC3G05424
Allium sativum	Asa2G04381.1
Arabidopsis thaliana	AT1G05120.1
Oryza sativa	LOC_Os07g32730.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00176.20	SNF2_N	Family	124	374	133.0	9.4e-39
PF00176.20	SNF2_N	Family	406	519	26.8	1.7e-06
PF13920.3	zf-C3HC4_3	Domain	541	585	29.2	5.7e-07
PF00271.28	Helicase_C	Family	638	739	44.7	1.3e-11

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0000109	C	nucleotide-excision repair complex
GO:0000166	F	nucleotide binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000720	P	pyrimidine dimer repair by nucleotide-excision repair
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003678	F	DNA helicase activity
GO:0042623	F	ATPase activity, coupled
GO:0003824	F	catalytic activity
GO:0004003	F	ATP-dependent DNA helicase activity
GO:0017111	F	nucleoside-triphosphatase activity
GO:0004386	F	helicase activity
GO:0004842	F	ubiquitin-protein transferase activity
GO:0005488	F	binding
GO:0046872	F	metal ion binding
GO:0005524	F	ATP binding
GO:0016567	P	protein ubiquitination
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0016887	F	ATPase activity
GO:0006259	P	DNA metabolic process
GO:0006281	P	DNA repair
GO:0006289	P	nucleotide-excision repair
GO:0006290	P	pyrimidine dimer repair
GO:0006464	P	cellular protein modification process
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006974	P	cellular response to DNA damage stimulus
GO:0006996	P	organelle organization
GO:0008026	F	ATP-dependent helicase activity
GO:0008094	F	DNA-dependent ATPase activity
GO:0008144	F	drug binding
GO:0008150	P	biological_process
GO:0008270	F	zinc ion binding
GO:0009987	P	cellular process
GO:0016043	P	cellular component organization
GO:0016462	F	pyrophosphatase activity
GO:0016740	F	transferase activity
GO:0016787	F	hydrolase activity
GO:0016817	F	hydrolase activity, acting on acid anhydrides
GO:0016818	F	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0017076	F	purine nucleotide binding
GO:0019538	P	protein metabolic process
GO:0019787	F	ubiquitin-like protein transferase activity
GO:0033554	P	cellular response to stress
GO:0030554	F	adenyl nucleotide binding
GO:0032392	P	DNA geometric change
GO:0032446	P	protein modification by small protein conjugation
GO:0032508	P	DNA duplex unwinding
GO:0032553	F	ribonucleotide binding
GO:0032555	F	purine ribonucleotide binding
GO:0032559	F	adenyl ribonucleotide binding
GO:0032991	C	macromolecular complex
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0035639	F	purine ribonucleoside triphosphate binding
GO:0036094	F	small molecule binding
GO:0036211	P	protein modification process
GO:0043167	F	ion binding
GO:0043168	F	anion binding
GO:0043169	F	cation binding
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0046914	F	transition metal ion binding
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0061630	F	ubiquitin protein ligase activity
GO:0061659	F	ubiquitin-like protein ligase activity
GO:0070035	F	purine NTP-dependent helicase activity
GO:0070647	P	protein modification by small protein conjugation or removal
GO:0071103	P	DNA conformation change
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0090304	P	nucleic acid metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0097367	F	carbohydrate derivative binding
GO:1901265	F	nucleoside phosphate binding
GO:1901360	P	organic cyclic compound metabolic process
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1990391	C	DNA repair complex
GO:0140096
GO:0140097

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15083	RAD16; DNA repair protein RAD16	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network