result

Gene information

Detail information of g2870


Location
GeneChrStartEndStrand
g2870CHR635131353514260+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010932858.11.3e-202histone acetyltransferase GCN5 isoform X1
SwissprotQ338B9.12.8e-189Histone acetyltransferase GCN5
trEMBLA0A6I9RW469.7e-203histone acetyltransferase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G54610.173.851e-179 626BGT;GCN5;HAC3;HAG01;HAG1;HAT1histone acetyltransferase of the GNAT family 1

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Ortholog group
SpeciesGenes
Allium cepag2870.t1
Allium fistulosumAfisC2G02933
Allium sativumAsa0G04842.1
Arabidopsis thalianaAT3G54610.1
Oryza sativaLOC_Os10g28040.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00583.22Acetyltransf_1Family25833234.12.1e-08
PF00439.22BromodomainDomain45353580.65.8e-23

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0051276Pchromosome organization
GO:0000123Chistone acetyltransferase complex
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003824Fcatalytic activity
GO:0004402Fhistone acetyltransferase activity
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006355Pregulation of transcription, DNA-templated
GO:0006464Pcellular protein modification process
GO:0006473Pprotein acetylation
GO:0006475Pinternal protein amino acid acetylation
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0008080FN-acetyltransferase activity
GO:0008150Pbiological_process
GO:0009314Presponse to radiation
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009908Pflower development
GO:0009987Pcellular process
GO:0010015Proot morphogenesis
GO:0010321Pregulation of vegetative phase change
GO:0010468Pregulation of gene expression
GO:0010484FH3 histone acetyltransferase activity
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0016043Pcellular component organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0016407Facetyltransferase activity
GO:0016410FN-acyltransferase activity
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0016569Pcovalent chromatin modification
GO:0016573Phistone acetylation
GO:0016740Ftransferase activity
GO:0016746Ftransferase activity, transferring acyl groups
GO:0016747Ftransferase activity, transferring acyl groups other than amino-acyl groups
GO:0018193Ppeptidyl-amino acid modification
GO:0018205Ppeptidyl-lysine modification
GO:0018393Pinternal peptidyl-lysine acetylation
GO:0018394Ppeptidyl-lysine acetylation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0022414Preproductive process
GO:0022622Proot system development
GO:0031248Cprotein acetyltransferase complex
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032991Cmacromolecular complex
GO:0034212Fpeptide N-acetyltransferase activity
GO:0036211Pprotein modification process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0043543Pprotein acylation
GO:0043966Phistone H3 acetylation
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044464Ccell part
GO:0048364Proot development
GO:0048367Pshoot system development
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0061733Fpeptide-lysine-N-acetyltransferase activity
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090567Preproductive shoot system development
GO:0097159Forganic cyclic compound binding
GO:0099402Pplant organ development
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1902493Cacetyltransferase complex
GO:1902494Ccatalytic complex
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1990234Ctransferase complex
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:1905392

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K06062PCAF, KAT2, GCN5; histone acetyltransferaseEC:2.3.1.48 Notch signaling pathwayko04330
Thyroid hormone signaling pathwayko04919

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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