result

Gene information

Detail information of g287468

Location

Gene	Chr	Start	End	Strand
g287468	CHR7	112575008	112576383	+

Sequences

CDS

Protein

Gene

>g287468.t1
ATGGCCGGACCTGCAAAATCCATCCAACCAAAACCAAGGCAGAGAGTCGAAGCCGATACGAGTAGCACTACTACTTTGAAGAGAGCACAAGACGGCAGCGCTTTCACCAGATGGTAAAACAATGTTCTCTTATCCGTACTCATACTAGATCTAGATCTCACAACTTTGAAATTTAGTTTATCGTTTCTAAACATCCGTCTGCAATTTGATGAGAGTGATCTTGTTTGCGTTATTTCATCAGTTTGTTTTTGATCGGTCTGAATTTTGGTTAATTTTGGAATTTCTTACTTGTTATTTGGATTCCAATCTCTTTTTCATAAACCTAATCGGTTGTCTGCTTGTTTTGGAATTTGTATTACAATACATGCTTAGTTTTCCCTTCATATTAAAGCATTATCTTTTCAATTATTTTAATTTTAGTGGAAATTGCAACAAGAGCGTGCCTGTTGTTCTCATAGATATGCATAACTGCAGTCTTGACTCAAAAATCAGGATGAATCTAGGTAATTTTTGCTCAAAATCTCTCTACTTGTTTAAGTTCCTTAGTTTAATTGTTTCATTTTTTTTTACTTTATGCTATTTCTACCTACAGAGGCTCAAGTTGTAGAGAAAGAGGTTCATGTAAAGAAAGCTGAGAAGTAATTTTCTATCCTATATAGCTAAACCTAACGCAGTTCGTTCATGAAATTGAAGTTTAATTTTGAACTAATGCAGAAAAAGACCATCTCCAACTACAACCAAAGAAAAAAAGGGTAAAAAAGCGAAGCAATCTGTTGATCCAAACAAGCCTAAGAGACCTCTTTCAGCTTATTTCCTCTTTATGTAATTATCAATTTTCTTTTACTTCTATGCAGTCTTCCCAACGTTCCCTGATTCCTTTAATGCTAAATATTTGAATTGGTGCTTCAGGGAGGAATTTAGAAAGACATACAAAGAGGAAAACCCAGATTCAAAGGGAGTTACAGGTGTCACAAAGGAAGCTGGTGCAAAGTGGAAATCAATGACAGACGAGGTTGATATTATTTTTTATATGCATTGGATGTTAATATATTATTGCGATCTAATATTTGTTGTGTTGCATTTGAATTAATAGGAGAAGAAGGACTACATTGATAGAGCAGCTAAGCTCAAAGAAGAGTACTTGATAGCACTTGAGAAGTACAATGCAGGTGGAAATGAAGAGGTGTGTAAATCTTTTAATGCTGCAATCATTACATTGATGGTATATTTGATGATTTACTGTTTGGTGCATGTTTCAGGAAAAGGAAGGTTCTGATAAAGAAACTGAGGAAAAAGAGGAGGAAGCTAACGAAGGAGGTGAAGAAGAAGGCTGTGATAAGGTTGATGAAGAACTTGAAGACAAGGATGATGATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_002267697.3	2.5e-48	PREDICTED: high mobility group B protein 7
Swissprot	Q8LDF9.1	1.4e-30	Protein NUCLEAR FUSION DEFECTIVE 7
trEMBL	F6HVY6	1.8e-48	HMG box domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G23420.1	55.68	1e-42	169	HMGB6	high-mobility group box 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g287468	AT5G23420.1	176	68	5	1	167	1	175	55.68	1e-42	169
g287468	AT5G23420.2	76	21	2	1	73	1	76	68.42	1e-22	102
g287468	AT2G17560.2	115	57	2	88	199	19	131	46.09	6e-21	97.4

Ortholog group

Species	Genes
Allium cepa	g287468.t1
Allium fistulosum	AfisC7G03801
Allium sativum	Asa3G02017.1; Asa6G00065.1
Arabidopsis thaliana	AT5G23420.1; AT5G23420.2
Oryza sativa	LOC_Os08g01100.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	106	175	75.8	2.3e-21

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000741	P	karyogamy
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006996	P	organelle organization
GO:0006997	P	nucleus organization
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009553	P	embryo sac development
GO:0009559	P	embryo sac central cell differentiation
GO:0009561	P	megagametogenesis
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010197	P	polar nucleus fusion
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016043	P	cellular component organization
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048229	P	gametophyte development
GO:0048284	P	organelle fusion
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10802	HMGB1; high mobility group protein B1	EC:-	Base excision repair	ko03410
			Autophagy - animal	ko04140
			Necroptosis	ko04217
K11296	HMGB3; high mobility group protein B3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network