Detail information of g287652


Location
GeneChrStartEndStrand
g287652CHR85219078952216747+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrTHU54529.16.9e-18hypothetical protein C4D60_Mb10t26060
SwissprotQ9C5K8.11.1e-09Jasmonate ZIM domain-containing protein 12
trEMBLA0A4S8J0R85.0e-18Protein TIFY

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G20900.144.446e-1577.4JAZ12;TIFY3Bjasmonate-zim-domain protein 12

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Ortholog group
SpeciesGenes
Allium cepag287652.t1
Allium fistulosumAfisC8G04055
Allium sativumAsa1G01572.1; Asa4G01523.1
Arabidopsis thalianaAT3G43440.1; AT3G43440.2; AT5G20900.1
Oryza sativaLOC_Os04g55920.1; LOC_Os04g55920.2; LOC_Os04g55920.5

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF06200.11tifyDomain9212361.43.3e-17
PF09425.7CCT_2Motif17319029.73.9e-07

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003712Ftranscription cofactor activity
GO:0003714Ftranscription corepressor activity
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006950Presponse to stress
GO:0008150Pbiological_process
GO:0009611Presponse to wounding
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009966Pregulation of signal transduction
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010646Pregulation of cell communication
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0023051Pregulation of signaling
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031347Pregulation of defense response
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048583Pregulation of response to stimulus
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:0080134Pregulation of response to stress
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000022Pregulation of jasmonic acid mediated signaling pathway
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K13464JAZ; jasmonate ZIM domain-containing proteinEC:- Plant hormone signal transductionko04075

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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