result

Gene information

Detail information of g288328

Location

Gene	Chr	Start	End	Strand
g288328	Scaffold_62577:HRSCAF_445663	77657	81168	+

Sequences

CDS

>g288328.t1
ATGCCGATGAGCATTTCTCCGCTCAGTAGACCTATATTCACTTGTCTAATAACGAAACGTACGATTTGCGATATTTTTATAATTATTGTGGACAGAAGAAAAGAAAATATGTATGCTGAGCCCGGGTTCATGTATCCATTGCTTCCAAGCTACAGTAATGCCGAATTTTGTTATGATACCCATCAAATGGGAAATTATGCACAAAATTCAACATTTGATTATGATCTAGGAGCAGAAGGAGACTTATTCAAAGCACCAGAACCAATTATGATGGAAGAACCTGTAGTCACATTAGATCCTCTAAGTGCTGCCTTGACTATCATATCAAACGGACAAGATGTGATGACCGATACATTTGAAGTTTCTGACATGATCGAGTCCTTGCAAAATGAGCAGCTTAACGACGTGTTCAATGAGTGCAAGAAGGAGCTTTTAGCTAAATACACAATCGATGATAGTTTAAATGAAACGGCACCAAACGCTAATGAAGTTTCTGTTCAAGGATGCTTTAGTTCAAATGCAGGACATTTACAAAAAAGCGTGAGCTCTGGGTGTCTTAATTCTATGGATTGGGTCAGTGATGGTTATAGTAGCCTTGGACATAACTTTTTAGACTTCCCAAGTGCCGATTTCGAAACTGCATTTGGGTTAAGAAGAACATGCAGTGAAGGTGATATTCAGTCCCTTGGGAGCAAAGGATTTACGAGCAGCATGCCTACATCCTTTGTCAGACAACTGACCATCAGCGAACTGAAGTCTGAACAACGAATGCAGAAACTTTCGAGATATAGAGATAAGAAGAACAAGAGAAATTTCGGAAGAAAAATCAAGTATGCATGTAGGAAGGCATTGGCGGATAGCCAGCCTCGAGTCAAAGGAAGGTTCGCTAAAACTGAAGATGGGGGAGGTCTCAAAACAAAAAGTGCAGGAAAAGCTAGCAGTAATCAGGAATTAAGCATGTATAATAATCAAATGTTGTTTAAGTCCTTATGCGTTCCAAGCTTGTTAGGCGACATAGGATGA

Protein

Gene

>g288328.t1
ATGCCGATGAGCATTTCTCCGCTCAGTAGACCTATATTCACTTGTCTAATGTACTGAACCCTGTCATTATGTTTACATGTCTATGCTCTTTTCAAAATTGGTGCTTAATGATCCCCTGGTCTGATGGCAAAATCTTCAAATGTAAAATAAAATTTATCATTAGAGGGAATTGGACTGAAGGAAAAACCTGAGAACACTTTTAGTTTGAAGGACAGAAGTTTTAAAAAATTTAGTCTGAAGGACAAAAAATGATATATTCATATAGCATTACACATCCCATAATGCTATATTCATATAGCATTACTAATCTATAATGCTATATACAACACAATTTTATAAGTTTCTGCATACACAAACAAGCAGCTGTGTAATGCTATATGAATATAGCATTATGAATGTGCAATGCTATATGAATATATCATTTTTTGTCCTTCACACTAAATTTTAAAACTTCTGTCTTTCAGACTAAAAGTGTTCTCGGGTTTTTTCCTCCAGTCTAATTCCCTGTATACTACTAAAGGGAATTAAGATGTAAATGAAGAGTGATTTAGTGAAGTGGTGTAAATCGTTTTTTGACTTTTCTAAGTCTAAAATAAAAGATATATTACATTAATGTTTATGTACATAGCAGTATAGCATGGCTCTTGAGATACAATACCGATGTACTTTTGTCTATAAATATTCAGTCATTCTCGCTCACTCTCCTTTCTTTTTTATACGTCCTCTCCTTTCTCTCTTCACATTTGCATAAACGCTCTTTGCAAATTCATTATTACATTACAGAACGAAACGTACGATTTGCGATATTTTTATAATTATTGTGGACAGAAGAAAAGAAAATATGTATGCTGAGCCCGGGTTCATGTATCCATTGCTTCCAAGCTACAGTAATGCCGAATTTTGTTATGATACCCATCAAATGGTATATTTTATATGAAATTTTCTCCTATCCTAACATTTTCTTTAGTAATTTCATATGCATATGTATTCTCTTTGCATTTTGTACATGGGTTTTAAGTTTCATATTATGGATGATTTTCTCAACAAGTTTAATTAAAGTGTTGAGAACTTTATTGGTAGTTGCTTGAGTACTTGGCATATTGGTTGATTTTTGATTAACATAATTTACCGAACCTCTTTAGCAGTTTACTGCGATTCTGTTCTTTTTAAGTGCCCAAAATTCAGAAAGGGGTGTTTGGGTTAACTTATATTTTGTTCCTTTTTTATAATTATTTTGCTAATAAAATATTTTTACTAACTTGTTAAAATAATATAATTCATTATGACTTACCATGGGATTCAGTGAATATGTGTTAAAAAAACAAGCTTGAAATTGGTAGTGATGAAATTGTACAGCAATGCCACCCTCTTACTTTTAAGTAACCAAGGCCCATTACTACGAATTTAAACAGCAACCACTTTTTTCTTTGTATTCCATGAATTATTCTCAGAAATACTGAATAAATTTCGGAGTGAATTGTACATACTGGCAATTCTCTAATTTCCATATACGACTGTATTCATGACTGTCCCCAGAGTAATTACAGAACAATGCTTAGTACTTCAACTTAGGGAATTTTACTTGTTTCCTTCCTTTCTGAATGTACTGCTATATTTGTAGATAAGAGTGTATTTACTTGGTTTTAGTTTCAGTTTTATGATAAACTAAATTCGATGATTATAAGGGCTGAAGTTATTCAATCTAGTCTGCTTGTTAGCTTATCCTTGCAAAATTAATCAACTTGTTGACATATACAAATTTGTAGTTGGAAAATAAAGTTACGAATGATGGTAATAGACTTTTGGTATTTTGTTTACTTGGGTTAATATTTGCTGAGTTTCATTTCAAACTCAATTATATACTATACAAACATGTCTCTCAGTATGAAATTTAATCTATCTGTAAAACATTGTTTTTTTCAAGCATCTTCCCTAGTTATTATTCAACATCTTCACATTTGAACCAAGGGCCCTATTTGTTTGGTATTTACAGAGAATGCGAGACTCATTAACTTATATTTGTTGTATCTTGTTGTTGGTTTAAATCACTATAATACAAATTTTAAATACATCAGCTAAATCGATTTTTAAAAACTAAATAGAGAACTATTTTGTTCTGTTGCTAGATTCCAAACAAAATAATTTCTTCAGATCCATTCAGTAATGAATTTTTGTTTTTACTAATGTATTATTTGAATCTGGAAACTTTATGATTGTGTATATAGTATATACTCCATATATGCTTGTGTACAATACAGAATTCTACCTAAGCATGATATTCTAGGATTTCTCTGGTAGCATGAATAAGAATTATTTTTTGCATAATAACATAAATCATATAGATGTAAATTACATTTTAGTCGATCACAGAAAGAATTTTCAGTATAAACAATTCAATATTAAAAAATGTTTGTGCTGATGTACACTACAAGCACAAAGGTTTAATTAATGGAATTGATATTGTGCGCATACAGGGAAATTATGCACAAAATTCAACATTTGATTATGATCTAGGAGCAGAAGGAGACTTATTCAAAGCACCAGAACCAATTATGATGGAAGAACCTGTAGTCACATTAGATCCTCTAAGTGCTGCCTTGACTATCATATCAAACGGACAAGATGTGATGACCGATACATTTGAAGTTTCTGACATGATCGAGTCCTTGCAAAATGAGCAGCTTAACGACGTGTTCAATGAGTGCAAGAAGGAGCTTTTAGCTAAATACACAATCGATGATAGTTTAAATGAAACGGCACCAAACGCTAATGAAGTTTCTGTTCAAGGATGCTTTAGTTCAAATGCAGGACATTTACAAAAAAGCGTGAGCTCTGGGTGTCTTAATTCTATGGATTGGGTCAGTGATGGTTATAGTAGCCTTGGACATAACTTTTTAGACTTCCCAAGTGCCGATTTCGAAACTGCATTTGGGTTAAGAAGAACATGCAGTGAAGGTGATATTCAGGTCAGGAGCTAAGCTGATTTTCCAATTCAAGATATTTGTCCATATTTCTGTTGTATTTAAAGCCTATTTACGAACAGTCCCTTGGGAGCAAAGGATTTACGAGCAGCATGCCTACATCCTTTGTCAGACAACTGACCATCAGCGAACTGAAGTCTGAACAACGAATGCAGAAACTTTCGAGATATAGAGATAAGAAGAACAAGAGAAATTTCGGAAGAAAAATCAAGGTAAAATTGCTACAGCATCCCAGATTAGATGATATTTAAATTTACGAAAAATTGAATATTACAATGACTGATGGTATACGTGTCTTGTTCGCAGTATGCATGTAGGAAGGCATTGGCGGATAGCCAGCCTCGAGTCAAAGGAAGGTTCGCTAAAACTGAAGATGGGGGAGGTCTCAAAACAAGTTGAGTGAAAAATGTACGGTATTTTCATGCAGAAAGTGCAGGAAAAGCTAGCAGTAATCAGGAATTAAGCATGTATAATAATCAAATGTTGTTTAAGTCCTTATGCGTTCCAAGCTTGTTAGGCGACATAGGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264063.1	3.4e-76	uncharacterized protein LOC109839993
Swissprot	Q9LJ44.2	1.2e-04	Zinc finger protein CONSTANS-LIKE 12
trEMBL	A0A5P1EXA4	2.5e-76	CCT domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G53420.1	43.68	1e-48	190		CCT motif family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g288328	AT5G53420.1	277	128	12	37	300	1	262	43.68	1e-48	190
g288328	AT4G27900.2	282	124	12	37	300	1	258	41.13	7e-43	171
g288328	AT4G27900.1	282	124	12	37	300	1	258	41.13	7e-43	171

Ortholog group

Species	Genes
Allium cepa	g166076.t1; g287657.t1; g288328.t1; g296114.t1; g349412.t1; g445049.t1
Allium fistulosum	AfisC1G09126; AfisC2G01393; AfisC2G02631; AfisC3G07128; AfisC4G01511; AfisC4G01526; AfisC5G02264; AfisC5G06182; AfisC6G01596; AfisC7G01376; AfisC7G04700; AfisC8G05502; AfisS1410G00003
Allium sativum	Asa0G01329.1; Asa0G01380.1; Asa0G01501.1; Asa2G05711.1; Asa3G03711.1; Asa3G03712.1; Asa4G05865.1; Asa6G06995.1
Arabidopsis thaliana	AT4G27900.1; AT4G27900.2; AT5G53420.1; AT5G53420.2; AT5G53420.3
Oryza sativa	LOC_Os05g51690.1; LOC_Os05g51690.2; LOC_Os05g51690.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06203.11	CCT	Motif	256	298	63.8	1e-17

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009889	P	regulation of biosynthetic process
GO:0009909	P	regulation of flower development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048580	P	regulation of post-embryonic development
GO:0048831	P	regulation of shoot system development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network