Detail information of g288422


Location
GeneChrStartEndStrand
g288422CHR52585994725868064-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008799528.11.6e-294homeobox-leucine zipper protein ROC5
SwissprotQ6EPF0.11.9e-260Protein RICE OUTERMOST CELL-SPECIFIC 5
trEMBLA0A8B7CI161.1e-294homeobox-leucine zipper protein ROC5 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT4G00730.165.420.0 963AHDP;ANL2Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag288422.t1; g530912.t1
Allium fistulosumAfisC5G00212; AfisC8G05032
Allium sativumAsa1G00799.1; Asa6G06992.1
Arabidopsis thalianaAT3G61150.1; AT4G00730.1
Oryza sativaLOC_Os02g45250.1; LOC_Os04g48070.1; LOC_Os04g48070.2; LOC_Os04g48070.3; LOC_Os09g35760.1; LOC_Os09g35760.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00046.26HomeoboxDomain10415968.52.9e-19
PF01852.16STARTDomain305530167.32.8e-49

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0009314Presponse to radiation
GO:0009411Presponse to UV
GO:0009416Presponse to light stimulus
GO:0009605Presponse to external stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009664Pplant-type cell wall organization
GO:0009791Ppost-embryonic development
GO:0009827Pplant-type cell wall modification
GO:0009889Pregulation of biosynthetic process
GO:0009908Pflower development
GO:0009987Pcellular process
GO:0010015Proot morphogenesis
GO:0010053Proot epidermal cell differentiation
GO:0010054Ptrichoblast differentiation
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0016043Pcellular component organization
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0021700Pdevelopmental maturation
GO:0022414Preproductive process
GO:0022622Proot system development
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0042335Pcuticle development
GO:0042545Pcell wall modification
GO:0043473Ppigmentation
GO:0043476Ppigment accumulation
GO:0043478Ppigment accumulation in response to UV light
GO:0043479Ppigment accumulation in tissues in response to UV light
GO:0043480Ppigment accumulation in tissues
GO:0043481Panthocyanin accumulation in tissues in response to UV light
GO:0045229Pexternal encapsulating structure organization
GO:0045595Pregulation of cell differentiation
GO:0045596Pnegative regulation of cell differentiation
GO:0048364Proot development
GO:0048367Pshoot system development
GO:0048437Pfloral organ development
GO:0048468Pcell development
GO:0048469Pcell maturation
GO:0048497Pmaintenance of floral organ identity
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048764Ptrichoblast maturation
GO:0048765Proot hair cell differentiation
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051093Pnegative regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0071554Pcell wall organization or biogenesis
GO:0071555Pcell wall organization
GO:0071669Pplant-type cell wall organization or biogenesis
GO:0071695Panatomical structure maturation
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090558Pplant epidermis development
GO:0090567Preproductive shoot system development
GO:0090627Pplant epidermal cell differentiation
GO:0099402Pplant organ development
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090700
GO:0140110
GO:1905392

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09338HD-ZIP; homeobox-leucine zipper proteinEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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