result

Gene information

Detail information of g288612

Location

Gene	Chr	Start	End	Strand
g288612	Scaffold_62609:HRSCAF_445695	179392	182602	+

Sequences

CDS

Protein

Gene

>g288612.t1
ATGGACTACCTAAACCTCCTCATAAACGGGCAAGCCTTCAGCGACGTCACCTTCAGCCTGGAAAATGGGGCCCGACTGGTCCACGCCCACCGCTGCATCCTCGCAGCCCGCAGCCTCTTCTTCCGTAAATTCTTCTGCGGTCCAGTTGAATCCCAGACATCCACGTCGTCCCTAGGCTCCCCCAGAGGCGGCGGTGCCGGAGTCGTTATTCCGGTCAACTCGGTTGGGTACGAAGTCTTCATGCTCATGCTGCAGTTTCTGTACAGCGGCAGCACATCGGTGCTGCCTCAGAAACACGAAGCGAGGGCTAATTGTAACGAGAGAGGGTGCTGGCATACGCATTGTGCTGCTGCTGTCGATCTCGCTCTTGATGTTCTCGCTGCTGCTAGCGCTTTTGGGGTCGAACAGCTTATGCTTCTTACTCAGGTTGGTTTATTTTTTAAAAGTTTTTAGTGTTTTTCGATTGATATATTTTGAATTTGGTTTCACTGATTTTGTTTTGTGGTGACAATCATGATTTCGAAATAACATGTTGAGAGCGAGTACTTTGAAAACTGTTGAGCATTTGACTTTTTATGGTTTTGGTGGGTTCATATCATACCTGTTTGGTGTTCATTTTTTTCTGCTCCTACTTGATTTAATCATTGATTTTTTTGTTGCATTATTGATTTGATATAACTAGCTTTAATTTATGGTAGCATTATTGATGTTATTATGATTTAGGGTTAGGGATTCATGAACTCTATATATTTGCTACTTATTGCTCAGAAAAGGTAAATTTAATATATGTTTCTATTTCTCTTTATAATTTCGAAAGTTCGTTCTTAATATTGAACATATCATTTGCTTATTTCGTATCATTCAATTTCATTAATAAATCCTTCTATCACAGTTCTTTTGTTTTTTCGAACAAAAAGAAAAAGGAAAAAAAAAAACGGCATATGCATTTTCATAATTAGTCTTTGCTTTATCACCTTCAACCAATTCTGATTAATCTCCGTAATTTAATGTTTGTTACTATTCTATGTCTGATACTGTAGACACTGAATTTCTTTTTTTCTTTTTGGTGTCAATAATTGAGCTTGATCAACATGCAGCAGCATTTCAATAAACCATTTTCAATAAAAAAAAATGCTAAATTAAAACGGCCAACTGATTGATTAAAAAAAAAAATTATATTTTTAATGCATTTCCCTACCTATTTCTTCTGCTACAAACCTGCAAACGAAAGGTTTCTCGAACAGCTTCTTTAACTTTTGGAATCTATATCACAGTGCAAAAAGTCCATATAGCTACTAAGTTTATGAATCTCCATTTGTGATTCCAACATAAAGTGGTTATGATTGATAATTTGTTCATTTAAATTTAATGCTAACAACCCTAATCTTGATTAATAGCCTATACCTTATATAAAACTACTACCTAGACCATATCCATATATATCATGCATAGCTACACACTCGCATTACAAAGCAAAATCATATATGAATAATTTTTCTTGATTTGATGTAGAAACAATTGGCAATCATGGTAGAAAAAGCATCAATTGAAGATGTAATGAGAGTGCTAATAGCGTCTCGCAAGCAAGAGATGCAACAACTGTGGACTACTTGCTCACACCTAGTTGCAAAGTCTGGACTACCCCCTGAAGTTCTAGCCAAACATCTCCCTATCGATGTAGTTGCGAAGATTGAGGAGCTACGTCTTAAATCAACTCTTGCTCGAAGATCTCCCTTTTTAGCACATCATCATTCGCTAGACATTGGTTGTCACCCTTCATCTAGTGAGATTGAGGATCATCAACAAAAGATTCATCGTATGCGCCGTGCACTTGATTCTTCTGACGTTGAACTGGTAATCTGGTATTCTTCTTTATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGGGGAGTATGAAACATTATTTGTAGGGGTACCTATAATTAGGCACTATCCATAATTTTAAAAACAAATAGGATAAAACCTACACAACGGTTTTTTCTTTAAACCTAGAAAATCAAGCTAGTATTTCTTGAAGCTATGTGTTTTGTCTCTAAAACACATGCTGTTAATATTAAACTATTATTTTACAATGTTAAGGTACTTCCGAATCATTAAAAAGTGATCCAGATGGTGCTACCATATCGAATTACACCCTTCATAAATTATATGCATTAATCCTATAGTGCATACTCCAGACAGAGAACAGTTTTGTTATCGTCGTTAGAGTTTAACTATTTGCATATTTCATTGACATTTCTCATTGGCATTTCATTGCTTTAAATAGAAGTTCCACCCTCGAAAGAGTTTCTAGGATAATCATTTGATTTATTCTATTTATTTTTTGAAGCAGGTAAGTTGGCTTTATTGTTGAACTATAGGAATCACAAATAGTTGCAACAAAATAGGAAAAACGAAATAAAATGAAAAGGCTAGAAAATTATCATTTGATTCAAAACACATCTTCTACAATGATATAAAATAGTCACGTATAAACTAACATTACTAACACAGCATATCAAAAGATGAACTCTTAATTTCAAACACCAATTTTATGATAACACATACATGTACAAACTAATTTGGCAGGTAAAATTAATGGTAATGGGAGAAGGTCTAAACCTAGATGATGCCCTAGCCCTCCACTACGCAGTCGAAAACTGCAGCCGGGAAGTGGTCAAAGCCCTCCTAGAGCTAGGAGCAGCCGACGTAAACTGCCCTGCAGGATCCTCCGGTAAGACACCCCTACACATAGCATCCGAAATGGTATGCCCAGACATGGTAGCGGTGCTCCTAGACCACCATGCAGACCCCAACATTCGTACTACAGATGGAGTCACTCCTTTAGACATCCTTCGATCTCTGACCTCCGACTTCTTGTTCAAAGGTGCTGTCCCTGGGCTAACTCACATAGAGCCCAATAAGCTTAGGCTGTGCCTTGAGCTCGTGCAGTCTGCTGCTTTGGTTATGTCTAGAGAAGACGCTATGAATGCGAATGCCAGTAATAATGCTAGTAATAGCAGTGGGAGTAATATGAACTTGAGCTTGGATTCTAGGATGGTTTATTTGAACCTTGGTATGGTTGATCATCCTCATGTCCAAATGGATCATGATGATCATCATAACAGTAATAGGCCTGGAACTTCTTTGTATTCTTCTCGCGATCATCATTTTCCATAA

Functional annotation

Database	accession number	e-value	annotation
nr	THU66004.1	6.6e-176	hypothetical protein C4D60_Mb05t09640
Swissprot	Q9ZVC2.1	3.1e-162	Protein BLADE ON PETIOLE 2
trEMBL	A0A804J236	4.7e-176	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41370.1	70.89	1e-177	619	BOP2	Ankyrin repeat family protein / BTB/POZ domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g288612	AT2G41370.1	474	102	11	1	450	13	474	70.89	1e-177	619
g288612	AT3G57130.1	464	108	10	1	452	14	456	69.61	7e-174	607
g288612	AT3G57130.2	146	36	3	1	142	14	157	71.23	1e-53	207

Ortholog group

Species	Genes
Allium cepa	g235934.t1; g288612.t1
Allium fistulosum	AfisC5G02821; AfisC8G01446
Allium sativum	Asa1G03650.1; Asa4G04341.1
Arabidopsis thaliana	AT2G41370.1; AT3G57130.1
Oryza sativa	LOC_Os01g72020.1; LOC_Os01g72020.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00651.28	BTB	Domain	5	98	51.4	9.4e-14
PF11900.5	DUF3420	Family	184	245	35.6	6.7e-09
PF12796.4	Ank_2	Repeat	252	334	46.6	3.5e-12

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0000151	C	ubiquitin ligase complex
GO:0005515	F	protein binding
GO:0019941	P	modification-dependent protein catabolic process
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0008152	P	metabolic process
GO:0002218	P	activation of innate immune response
GO:0002252	P	immune effector process
GO:0002253	P	activation of immune response
GO:0002376	P	immune system process
GO:0002682	P	regulation of immune system process
GO:0002684	P	positive regulation of immune system process
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0006952	P	defense response
GO:0042742	P	defense response to bacterium
GO:0007165	P	signal transduction
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006508	P	proteolysis
GO:0051603	P	proteolysis involved in cellular protein catabolic process
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006955	P	immune response
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009056	P	catabolic process
GO:0009057	P	macromolecule catabolic process
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009617	P	response to bacterium
GO:0009682	P	induced systemic resistance
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009753	P	response to jasmonic acid
GO:0009755	P	hormone-mediated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009798	P	axis specification
GO:0009838	P	abscission
GO:0019005	C	SCF ubiquitin ligase complex
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009908	P	flower development
GO:0009943	P	adaxial/abaxial axis specification
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009954	P	proximal/distal pattern formation
GO:0009955	P	adaxial/abaxial pattern specification
GO:0009965	P	leaf morphogenesis
GO:0009987	P	cellular process
GO:0010016	P	shoot system morphogenesis
GO:0010022	P	meristem determinacy
GO:0010033	P	response to organic substance
GO:0010073	P	meristem maintenance
GO:0010227	P	floral organ abscission
GO:0010254	P	nectary development
GO:0010432	P	bract development
GO:0010433	P	bract morphogenesis
GO:0010434	P	bract formation
GO:0010498	P	proteasomal protein catabolic process
GO:0010582	P	floral meristem determinacy
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019899	F	enzyme binding
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0022414	P	reproductive process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0030162	P	regulation of proteolysis
GO:0030163	P	protein catabolic process
GO:0031347	P	regulation of defense response
GO:0031349	P	positive regulation of defense response
GO:0031461	C	cullin-RING ubiquitin ligase complex
GO:0031625	F	ubiquitin protein ligase binding
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032870	P	cellular response to hormone stimulus
GO:0032991	C	macromolecular complex
GO:0042221	P	response to chemical
GO:0043161	P	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043170	P	macromolecule metabolic process
GO:0043207	P	response to external biotic stimulus
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043632	P	modification-dependent macromolecule catabolic process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044248	P	cellular catabolic process
GO:0044257	P	cellular protein catabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044265	P	cellular macromolecule catabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044389	F	ubiquitin-like protein ligase binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045087	P	innate immune response
GO:0045088	P	regulation of innate immune response
GO:0045089	P	positive regulation of innate immune response
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048439	P	flower morphogenesis
GO:0048507	P	meristem development
GO:0048518	P	positive regulation of biological process
GO:0048583	P	regulation of response to stimulus
GO:0048584	P	positive regulation of response to stimulus
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050776	P	regulation of immune response
GO:0050778	P	positive regulation of immune response
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051246	P	regulation of protein metabolic process
GO:0051704	P	multi-organism process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065001	P	specification of axis polarity
GO:0065007	P	biological regulation
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:0071395	P	cellular response to jasmonic acid stimulus
GO:0071495	P	cellular response to endogenous stimulus
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0080134	P	regulation of response to stress
GO:0090567	P	reproductive shoot system development
GO:0098542	P	defense response to other organism
GO:0099402	P	plant organ development
GO:1901564	P	organonitrogen compound metabolic process
GO:1901565	P	organonitrogen compound catabolic process
GO:1901575	P	organic substance catabolic process
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:1902494	C	catalytic complex
GO:1990234	C	transferase complex
GO:0090698
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14508	NPR1; regulatory protein NPR1	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network