result

Gene information

Detail information of g292941


Location
GeneChrStartEndStrand
g292941Scaffold_63283:HRSCAF_446369764562771197+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrPIN23917.17.6e-50Transcription factor, Myb superfamily
SwissprotP81392.15.1e-51Myb-related protein 306
trEMBLA0A2G9I2D15.5e-50Transcription factor, Myb superfamily

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G28910.179.821e-51 198ATMYB30;MYB30myb domain protein 30

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag292941.t1
Allium fistulosumAfisC7G02106
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain478943.42.4e-11
PF00249.28Myb_DNA-bindingDomain9614050.31.8e-13

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988Ftranscription factor activity, protein binding
GO:0000989Ftranscription factor activity, transcription factor binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001076Ftranscription factor activity, RNA polymerase II transcription factor binding
GO:0001101Presponse to acid chemical
GO:0001134Ftranscription factor activity, transcription factor recruiting
GO:0001135Ftranscription factor activity, RNA polymerase II transcription factor recruiting
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009266Presponse to temperature stimulus
GO:0042493Presponse to drug
GO:0009409Presponse to cold
GO:0010038Presponse to metal ion
GO:0009414Presponse to water deprivation
GO:0009415Presponse to water
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009719Presponse to endogenous stimulus
GO:0009723Presponse to ethylene
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009737Presponse to abscisic acid
GO:0009751Presponse to salicylic acid
GO:0009753Presponse to jasmonic acid
GO:0009787Pregulation of abscisic acid-activated signaling pathway
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009966Pregulation of signal transduction
GO:0009987Pcellular process
GO:0010025Pwax biosynthetic process
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010115Pregulation of abscisic acid biosynthetic process
GO:0010166Pwax metabolic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010565Pregulation of cellular ketone metabolic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0010646Pregulation of cell communication
GO:0044212Ftranscription regulatory region DNA binding
GO:0014070Presponse to organic cyclic compound
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0046677Presponse to antibiotic
GO:0019216Pregulation of lipid metabolic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019747Pregulation of isoprenoid metabolic process
GO:0046686Presponse to cadmium ion
GO:0023051Pregulation of signaling
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032502Pdevelopmental process
GO:0033993Presponse to lipid
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043455Pregulation of secondary metabolic process
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0046890Pregulation of lipid biosynthetic process
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048583Pregulation of response to stimulus
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0080050Pregulation of seed development
GO:0080090Pregulation of primary metabolic process
GO:0080167Presponse to karrikin
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:1901363Fheterocyclic compound binding
GO:1901419Pregulation of response to alcohol
GO:1901568Pfatty acid derivative metabolic process
GO:1901570Pfatty acid derivative biosynthetic process
GO:1901576Porganic substance biosynthetic process
GO:1901700Presponse to oxygen-containing compound
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1902930Pregulation of alcohol biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1904276Pregulation of wax biosynthetic process
GO:1904278Ppositive regulation of wax biosynthetic process
GO:2000026Pregulation of multicellular organismal development
GO:2000033Pregulation of seed dormancy process
GO:2000034Pregulation of seed maturation
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0062012
GO:0140110
GO:1905957

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09422MYBP; transcription factor MYB, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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