result

Gene information

Detail information of g293260

Location

Gene	Chr	Start	End	Strand
g293260	Scaffold_63343:HRSCAF_446429	461736	463780	+

Sequences

CDS

Protein

Gene

>g293260.t1
ATGAAAACCCTAGAACCTGCTGCTTCGTCTTCTGAGGAAGAAACTTCTTTTTCATCAGAGGAAGTACCACCCTCTCAAAAAAGGCTTAAAATCAATGCACAAAGTTCCGATTCGGAGTTTGAAGAATCTGAATATGATCCGGATGAAGAAGAAAGCGATGAATTAAGCGATCCAGACCCTAAATCTGTTGTCCCAGTAGCAGGCGGTTCATCTAAAAAGGGCGATTCGAAAGGAAAGAAAACCGCTAATAATCTTTCCCAAATCGAAAAAGGCAAGAAAAAGTCCAAATCTTATAATTTGAAATCCAAGGTAGAAAGGGACGAGTCAGGTGATCCAGTGCCTAAATCCTTTGTCCCAGTACCAGGCGGTTCGTCTAAAAAAAGCGACTCAAAAGGAAAGAAAACTGCCGATAATGTTACTCAAAACGAAAAAGGCAAGAAAAAGCGCAAATCCTATGAATCCAAGGGACCGCAATTGGTATCTTCTTCCAGAAGCACTCTCAAAGCAAAAGGAGACAGTGGAGTTTCTAAGAAAAATCGTTTTAGAGTTTGGTCCTTAGAGGATGAGGTAACACTACTGAATTCCGTACATGAGTTCCAATTGAAGGAAGGAAGAAAAGTAGATCCTTCCTCAATAGAACTATTCTGTGATTTATTGAAGGGTAGGCTAAGTTTCACTGAGAAGCCCGGCGCTAGACAGGTTTCCAAAAAAATCGAAGTCTTGAAGAAGAAATATTTTAATAGTGTAAAGTCTTTTACCGTTGAACATGACTTGAAAATGAAAGAGATTGCTGATAGAGTATGGAAGAGCGAGTCTTCAAAGAGAGAGTTTCCACGACTGAAGGCACAACTCCGGAAATTGGATCTTCTTGATTTAGAAGAGGAACTTAAACATGAAGAAAAAATCATAGCTTTAGAAAGTAAACTCAAAAAGCAAAGAATCAACGATATGAAGGTGACTCTGAAAAGATTGGAACTGGAAAAGGAGATCTTAAAGTTTCACTTGGAGGATTTTCAAAATTCAGATGGTTAGGTATGAAAACGCATGATATCCTTTGTTTAAAAGTTTTATGTTTCTTTTATTAAGAGAAGAGATGCCGTTGTCTGTTTCTGGTTTGCTTATGTTATGTATGCTTCTTTTGTCTGTAAGAAAGAATGGTAGGAAAAGTTAGCTTGAAGAACGATGGTATATTTTATATCCAAAGTTTTCCGTGATACAAGAAACTAATGCACCCAGTACTTTTTGTGGATAGATATTATTTGTAAATTTTTGATATGTTTTGCGATCAGACACCAATTAAGCACTTTTTAAGAATTTTCCTTCAAATGATTTTTGTGTTTAGGATTCAAATTTGTGGCAGTACAACACTAAATATGAATGGCATTGATTAATGACTTGATTTACAGTGAAAATTAACTTATGTTCATGGTAATTGTGATATTAAATGCAGTATCTTTTACAGGCATAAAACTGGTCACATAAAGTAGGTTTTCATGCTTATAAAACCGGTTGCACAATTAGACTGGCATTTAGATTCTATACCTGTAAATATCAATTGAGGTTGTTTATATATATTGTGTTTGGAGTGACAATTAGATTCAAAAGTTGCAAATGGCAATTGAGTAGGTTGAATTTTTTTTTTATATGAGAAATATTGCACTTAACTAGTTTTGGCCATTTAGTATGTAAAGAACTACCGATTTGTATATGCTAGTTTATAAGCATGTGTCGTAGGAAGTTTTCATTGATTTAAAATCTAACTTATGCTTATAACTTTAATATTGCCTACATTCTCTACTTGTTGCTGCTGATTTTCAAAAGTAGAACTATCTCGAATGAAACTCATCATATTATTTACATGTTTATACTTAATAAAGCGGGCTTTATGAACTTGAGAATACAAGCAGTAAATCTCTACGATATAGTGTTAAGTTAGTTTCACAAAGTGCTTGATGGAAATCCTGAAGATATAACAAATGTTTTTTTTTTACTTAGATGTGAAGCAGGAATCAAAATGGATGGAGCTGGGAAAATTAGACGTTTAA

Functional annotation

Database	accession number	e-value	annotation
trEMBL	A0A0Q3SVH4	9.7e-04	GLABROUS1 enhancer-binding protein-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
-	-	-	-	-	-

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
-	-	-	-	-	-	-	-	-	-	-	-

Ortholog group

Species	Genes
Allium cepa	g100352.t1; g293260.t1; g307365.t1; g413482.t1; g428003.t1; g433991.t1; g433999.t1; g434000.t1; g479451.t1
Allium fistulosum	AfisC1G05575; AfisC1G06898; AfisC2G08602; AfisC4G00114; AfisC4G02714; AfisC6G02770; AfisC6G03336; AfisC6G06890; AfisC6G06898; AfisC6G06900; AfisC6G06908; AfisC6G06909; AfisC6G06910; AfisC6G06911; AfisC7G01218; AfisC8G05944; AfisC8G05945
Allium sativum	Asa3G01886.1; Asa8G00091.1; Asa8G00092.1; Asa8G00801.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g53150.1; LOC_Os06g30250.1; LOC_Os09g01140.1; LOC_Os09g03990.1; LOC_Os10g09910.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04504.11	DUF573	Family	182	268	46.2	4.8e-12

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network