result

Gene information

Detail information of g296699

Location

Gene	Chr	Start	End	Strand
g296699	Scaffold_63815:HRSCAF_446901	130832	135544	-

Sequences

CDS

Protein

Gene

>g296699.t1
ATGGAAAGAGGGTTGAGAAGCAATTCTACCGACTCCATTGATACTTCTTATGCCTCAAACAGCGTAGTTGGTCCATTATGTTCATCATCAGCCTTAGGGATCACTTCTAGTCTACAATTTTCTTTACCTAGACAACCAAATATTTCTCAGTCACATGATAGCGATTTAGGTCCATTCCAAACTCAAATTTACAACAGGGAATCCAATGTTATTAACTGGGATCAGGGCACTCTTGATTATTCAGATGATATTGATAATAGCAACATTCTAATCTCGAATGGTTCTGATATAGTTTCCGATGAACTCTTTCATAAAAATGGGTGGTGGTCAGATTTAGTAAATGAGGATTGGAAGGATATTCTTGGAACTAATGCTACAGAACCTCAACCAAAGGTATGTCTTATATTTATGAGGGGGACATGGTTTATAACATACATACATAGATACATATATCAACATGCTTTTAATCGTTGTTAAAAAGAACTCATGATTCTATATGCTTATTGAGCATAAATGACGAATTCACTCATCCCTTCTTGAACTTTGGTAAAAGTATGTGGCCACATATTTAGCTATGTGGTCGCACTGAAACTATGCGTTCTTTGAAGAAAATGCAATATTCATATGGATGGCCTTGTATTATATTTTTGTCTAATACATCTTTAAACGGTCGGGCAAACTGGAATTAATGGGATTGAATAAATAATACCTTCAATCTCCAATATGTGGATTTTCTTTTCACAACAAATTACTTGATCTAAACCTGAATTTGAGTCCAGTTCCACCAAATTATTCAGAAAACATCACTTTCACAAGTCACGATCAAGTTTATATATCAAGTAGTGTTCCTCAACTACAATGCCATGTGTTAATTACAAAGTCTGCATGCATAAATTGAATAATTTTCAGCATCTGTGTTGCATGCTCTGTTGCAATATTTGGTCCTCAATCCCATGATACAACATAGCAAGTTTCAGAATATCGAGTGGACCGCAAATCATGCACAACAGAATGTAAAAAATACGCTGTAAATATTTTTCTAAAGGTATAAAGTGCAGTGATTACTGAATCACTCAAAAAACCAACCTGACCCACATCCCTAAAGATAAACTGATAAAACATCAAATTTTGAATATTATTTAAAGTGGTACTTTATCCAATTAGAGCACTCAATTTGATGTCTCGAGGAACTGAACCAATGACCTCTAGAACCTCAGTTTTGAGCGCCATAGCTCTTGTCATTTGAGCAAGTGGATTTTGACCCAAGAAACATATTGGCCCAAAATCTCATTGATCCCAAATCAGATTTGACATAAGGCCTCTAATTGCCAACCCTAAACTTTAGAAAACTTGCCTTGGTATCCAGTTGGCTATACCAGATAGTGAATTATAAATTAGTCTCTAGGACAAATAATAATTCTATAAGAAGCCTATCTATAAGTGGGACTGATAAAAAAATGGATATCATATTAGCTGTATATGGGTTTCAGATTTAACAGATAAAAAAGCACCTGAAACATTATAAGCATCTGAAACAGGTTATTATGTTTGATTTTGGTATAGCTTTATCCAATCTTGAACCAGTCATCTATTCTATCTGATTCAATATCCACTCTTATAGGTATAGCATTCACCATAGAAATGGTGCATATGCAAAGTGATTGGGTAGCAGATATCTTTTTACACCCTTAGTGCCTCAACTATCCAAACAAGACTTGGTTAATGTTTTAACGGTTCTAAAAAGTTAAACTTGTTATTACTCGTATCCAAATTTAAAAGCTCAACTGCAAGTATTTTTTAACCTTAAGTTTGTGGAATGACATGTATTGATCAAAGACATGTATAATGGATATAATATTCCAGTGCAAGATAATATGGTTTTAGCCGAATCTAAGCACATTTCGTTCCTGTTCCAAAAACTGTGTTGTACACAGTGAATATATTTATATCTAACTTACATAAACAATCATGCATTGTTTTTCTTAAGGTTACAAACAAAGCTGCACCGGCATCTTCAAGTGTATCAGTACAAATGCAACAAGTATTTCCTTCTCATTCTGTAGAGTTAGGTGCTGCCGGTAATCCCTCTACTTCTAACGGTGGTGCTGCATCAAGGCAGCGCATGAGATGGACCCCTGAACTCCATGAGCGCTTTATGGAAGCAGTCAATCATCTTGGTGGCTGTGAAAGTACGTGTGTGTGTATGTCTATATATATATATATATGTATGTATGTATGTATGTATGTATGTATGTATATGTATGTGTGTGTGTGTATGTGTGTGTGTGTCGCTGGCTTTCAAAACCATATTAGTTTTAGTGGAAATTTGGTGCCGCCCCTTATTTTTAGAATTAATATGTGAAAAACCTTTTTCAAAAATATGTTTTAAATTACATCCCTATTTTTAATTTCGGTAAAAAAAACTGTCAGACATTGAATCTGAATAATAATCGCATGTTTCTATGATCTATTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATAACTGCAAATATTTGCATAGAAATCTGCGAATATTTTGAAACTTAAGAATATGGATTTTCTTTATAACATGTTTTTGGGAGGGGACGGCTGTGTATTTTGAAACTTAAAAGAGGGTGTTTTATAAATCTTTATATCTAATTTACATGCCTGTTTTATTTTCTAGGGGCTACTCCTAAAGCTGTGCTTAAGTTGATGAAAGTAGATGGATTGACAATATACCATGTGAAAAGTCATCTACAGGTTTCCTGCATTCTCTAATCTGGATATTTATCCATTTCTTGATATGTTTTGAATTTATATGCAGCATATTGTAATTTTTTTTATCCTGCAGAAATATAGAACAGCTAGGTACAGACCAGAATTATCTGAAGGTTGATTATTGTATTTCATAGCCTCGTCTTTTACTTGATATCTACCATGTTAGCTATAACTTACATAGTTATATATCTTACAACCTTGTCTTTTATTTGATATCTAACAGATGCATATTTGTTATAACATATATCTCACAGTCTCGTATGTGCTTTATTGTGTTCAGGGTCATCAGAAAAGAAACGTGACACACTCGGTGATATTTCATCTCTGAACCTAAAGACGTAAGTTAATCATTAGTGTTAGCTATTAGCTAATAGGTATATTTATAAGTACTTTTGTTTTTCCTATTTAAAAATCAAGTACAAATAGGTATGATACGTTAATCATGCTTGGTCTTCTCAAACCATAATTGCTGAAGCAACATGTTCTAAGCTTATATATTTAGACTTCTGAGATAGATATGACTAGCTATTACTTATTAATAAATCACTCTTTAGTATGCTCACCATATAAGTCTCTCTAAGATGTAGTTTGACAGTATTATAGTGTCATATTATTTTATACTATTTCGTTGATGTTATTGATATTGTTTTCAGAGGTATTGAGATAACAGAAGCCTTGCGACTTCAAATGGAGGTTCAAAAACGCCTCCATGAACAACTTGAGGTACATGTTATTTCTTTTTATCCTTTACACCTTTATCTGGCGCTCTGTAGTATACTGCATGCCTTATTTTGCACAGCTGAACCAACTGCCTATTATTGAGATTTCCTCGTCTTACTGTTGAATACTTGTAAAATGCAAATTTAGATATTTATTCCTTGTGCTGAATATTTCTTCCATGTTTGCGGAAGTAATTTTTTTTTTCTTGTGTATCATCATCAATTCCATGGTTTCAGGGAAAATTCTCCAGATGCTGTTCTTTTACAGATCCTTCTTTCAGAAAAATTATAATGATAATAATTTTGTTATGTGAAATCACATTTTGTCGAAAATTTAAAAATCATACGATTTAAACCCCGTTTCAGATCGTATCTCTCTCTTTATGATTCGATCTACATCCTTATTCAAACTCAACTAGAACCCAAGCAAAATCTTTCAAACCCATAATTATACATTTAAAGTACTTGGATCTACTATCCCATTTTTGATGCTTCCCAAACAAACTAAAGATAAAACAAAAAAAGAAAATTGAATTTTAAGTTTATATGCAGTAGCTCTAACATCAAAATCAATTTCGAGTATTTACAAACCTTAAGACATGAATGTCTTGAATATATGATTTACGATCTAAACCCGGTTACGATCTGAATTTTGAAATTTATGATTTATGATATGAATCTTTATTTTGAAAACCTTGCACAAAATTAGTTTGTTTGAAACCGGCTCTCCAGTTATGGGGGTAAGACTGTGTACAACTTGCGCACCCTAGATCTCACTGAAGTGGGAGTCATGTGCAGTAGGTGGAAAATGATGGATAACGACATAAAATTAGTTAGGTAGAGTTGTAAAACAACAACAAAAAAATAGTCCATACAATGGCAATTTATCTAGCAGACATTAGAAAGGACTTTTATGGTGGAATAGTATATTTACAAACTGCTTCCTGAAAATTAACACTTGGACAGATTCAAAGGAAGCTTCAGTTGAGAATCGAAGAACAAGGGAAGTATCTTCAAATGATGTTTGAAAAATCATGCAAATCTGCCTCTGGCCAAACTGCATCAGCTTCAACTAACCTCGATAATACACAAAAAGAACTTGAAGATGGTGGAGATACATCTGAATCTACTGATGTTGAAAAGAAAAAGGATTCAGCTACCGATGAATCTCCATCTTCGCCAAAGCGATTGAAAAGTCAAGATTCAGAAACAACACTGGAAAAATTAACATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247678.1	3.1e-63	protein PHOSPHATE STARVATION RESPONSE 2-like
Swissprot	B8B5N8.1	1.6e-40	Protein PHOSPHATE STARVATION RESPONSE 2
trEMBL	A0A5P1E5S5	2.2e-63	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G28610.1	39.90	7e-56	214	AtPHR1;PHR1	phosphate starvation response 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g296699	AT4G28610.1	401	175	9	16	399	55	406	39.90	7e-56	214
g296699	AT5G29000.2	335	121	9	78	384	125	409	40.60	9e-53	204
g296699	AT5G29000.3	335	121	9	78	384	82	366	40.60	1e-52	204

Ortholog group

Species	Genes
Allium cepa	g296699.t1; g58682.t1; g58683.t1
Allium fistulosum	AfisC3G04054; AfisC4G06593
Allium sativum	Asa0G01185.1; Asa0G01186.1; Asa1G03501.1; Asa2G00052.1; Asa2G03139.1; Asa5G05604.1; Asa7G04199.1; Asa8G02747.1; Asa8G02748.1
Arabidopsis thaliana	AT3G04450.1; AT3G04450.2; AT4G28610.1; AT5G29000.1; AT5G29000.2; AT5G29000.3; AT5G29000.4
Oryza sativa	LOC_Os03g21240.1; LOC_Os07g25710.1; LOC_Os07g25710.2; LOC_Os07g25710.3; LOC_Os07g25710.4

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF14379.3	Myb_CC_LHEQLE	Family	302	349	88.8	1.2e-25

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0007623	P	circadian rhythm
GO:0008150	P	biological_process
GO:0009267	P	cellular response to starvation
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009555	P	pollen development
GO:0009605	P	response to external stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009642	P	response to light intensity
GO:0009644	P	response to high light intensity
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0009991	P	response to extracellular stimulus
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016036	P	cellular response to phosphate starvation
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0033554	P	cellular response to stress
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031667	P	response to nutrient levels
GO:0031668	P	cellular response to extracellular stimulus
GO:0031669	P	cellular response to nutrient levels
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042592	P	homeostatic process
GO:0042594	P	response to starvation
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050801	P	ion homeostasis
GO:0048229	P	gametophyte development
GO:0048511	P	rhythmic process
GO:0048856	P	anatomical structure development
GO:0048878	P	chemical homeostasis
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0072505	P	divalent inorganic anion homeostasis
GO:0055063	P	sulfate ion homeostasis
GO:0055081	P	anion homeostasis
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0065008	P	regulation of biological quality
GO:0071214	P	cellular response to abiotic stimulus
GO:0071478	P	cellular response to radiation
GO:0071482	P	cellular response to light stimulus
GO:0071484	P	cellular response to light intensity
GO:0071486	P	cellular response to high light intensity
GO:0071496	P	cellular response to external stimulus
GO:0080090	P	regulation of primary metabolic process
GO:0098771	P	inorganic ion homeostasis
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0104004
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network