result

Gene information

Detail information of g296884

Location

Gene	Chr	Start	End	Strand
g296884	Scaffold_63834:HRSCAF_446920	365213	371738	+

Sequences

CDS

>g296884.t1
ATGGCCGCTCAGCCTTCTTCGTTGCATGTGTGCATGGATGATAGTTCAGACTGGCTCAAGAGTATTGTGAACTTCAACGATTCATCAGTTGACAACTCAAACTCGATCTCCCCATCAACCGAACTGATCTCGTATACAAACCCATCCCAGCCACAGCTGGAACGTAGGCTCCGTCCACCACATGACCACCCGCTAAAATGCCCTAGATGTGATTCCTCCCACACCAAATTCTGCTACTACAACAACTACAGCCTGTCCCAGCCCCGTTACTTCTGCAAGACCTGCCGCCGCTACTGGACCAAAGGTGGCTCCCTCCGCAACGTCCCTGTCGGTGGAGGCTGCCGAAAGACCAAGAAAAAGTCATCAGCCACGGTCCAGCAACCACAGCCTGTTAACATGTACCGCCACAGCAATCCACTGACCACAAATCTTGACTATTTTAACTGTGCTGGTCTAGGGATAGAGGAGAATGGTTGTTTTAATTCTGATTTTGGGTTTTCTTTACTGGGCTATGAAAAGGAGGCTGAGGTGAAGCCCATGCTGTCGCTGGAGTGGCAGGAGCAAGGATGTGGCAGTGATTTGTTTGGAGGGTATGGGCTTAACGGGTTGTGGGCTGGCATGGTTAATGGGTACGGTAATGGGTCTTCCTCATCTGCTGCCATGCTGCACCCGGTGCAGCCCAGTCTGCACGGGTATGCAGCCCAGGCTGCACGGGTGTGCAGCCCAGGTGGGCTGCGCACAAGTGCAGCCCTGAGGGGGGCTGCACACGTGTGCAGCCCTGGGGCGTGCAGGGTTGCACACTACAGCCCTGGGGCTGCACACCGGTGCAGCCCATCTCGGCTCCATAAAGGTGTGCAGCCCGCCCTGAGGGCTGCTCACCGGTGCAGCCCAGGCTGCAGAGTTGTGCAGCCCAGTCTGCACTTGTGCAGCCCGCCCTGGAGGGTACACACTGGTGCAACCTGCCCAGGCAGCACAATTGTGCAGCCCTAG

Protein

Gene

>g296884.t1
ATGGCCGCTCAGCCTTCTTCGTTGCATGTGTGCATGGATGATAGTTCAGACTGGCTCAAGGTACCATACATCAGAATAGTTTTGTGAAAAACATTTTCCGTTTCATAGTCCTTTTAAAACTTAAGTTCTCAGTTATAAGATGCATAAAAATTTAGTGATTAAACGTATTGATCAATAATTGTATTTCTTAAAGACGTGTTCCATGATTTTTGTAGATGTTTACACAACCAAAATTATAATGATAATTGAAATATAGGTGAACCATTAACTACTAAGGAAATGTTGATTAGCAATCTCTAATAGAATTTAAAGAGGATTACGTGTACGGAATAACCGTAGATGTATGTATCATTAGCTTACCGAGTCAAGAGAATTTATAATTATAGTTAACTCTATGTCTCTTTTCGTCTCTACATCTCTTTTAACTCTCACACTGTTTGTGTAGTTTCTCCCAGGCAGTGACTGACCACTGTATGACAATTATTTTTAGCACATGTATTGCTCAATTTGTAGCTCTAAACATGTATTTGTGGAGTTCATAGATAATTCCTGTTATTTTCACACAAACTTATGTGAATTCCACTGCAGATGTGTTTTGAATGAATTCATATCGAATCTCTGAATTATTGTTTATAAGATAAACGAAATAAATCCCAATGAATTTATGTGCAAGTACTTTAAGAGCACATATTTATATGTATACGCCATGAACCTTAATTCGAATTTGTAGATTTCTTTATCAAAGATGGATATTGATCTACCATCTAACAAACTCTTGAGCTCTATCATGTTGATATGTGTGTGTGTATGTGTGTGTGTATGTATATCATAATTAATTAGCAAGCAAATAAATATATTATGCATGAGTGGTGGTAGATTGCACGTAGTATTATTCTTGATTGAACCATCATTATTACTACGGTAAATCTGCTCTATTTCGTCAAGGATTCTTATATTGTAGGTGATGGAATGTTTACTTGTATAACTCCAAATTCCATGTATGGGTGTTATTTCTACGTAATAAGTGTTTTTTGTGTTTTATTATATTTGCTACACATTATTAAACAAGATAATATAAAGTCATGGTATATAATTTTCAAGGCTATATTAGTGGTAACAACTATAGTTTCGAACACTACACTGCGAGCCAAACCCTGTTGGTGCATTGTTAAAGGTTTAAGTGGTTCGACCGGTGAGACCGTTTTGATCTTCATTTTTATTTTTGATATAAATATAGAATTATTTCAGTTAATGTAAATTTTTAACCGGTTATAGTCCATTTGTTGACATTTAAATAAATCATTCATGATTATTCGATAAATATATTTAATTAGAAAAAAATCTATAATAGTATTTTTTGAAAATAAAATCTATAATAATTTATTTAGGGCAAAAGTGTAAATTTCCTAGTTTTTCAAGATAAAAGAAGTTGTTCAATAATTTTGTGGCTAAAGTTGTGTAAAATTATTTGTTAGTTGATTATGTGAGAATAAACGAAGATTGAAGGTTTTTTTCTTAAAGTTGATGAATTGTATGGTTCACAGAGGTCATATACATGAGGATTTTTAGGATTTTAAAGTTAGACGGTTGATCGAAGCATGTGCAAGATTATTTATTTCCAAAACTGTTGCGTTACAGAATCAAAAGGTTAAACCTGGTTGGATTGGGTGTGTTATTTAAACCCTGGTGCAAACAACTATTACTCCTTAGCTAGCATATGGAACAAACATACCATTTAGCTAATTACCTAATGTTTAAGTTATCATTTCAGACAATTAATACATTCTCAAATCTTTGAATGTCCTACACATTTCGTTACATTTTGATATAGATTTTACTTTTAACCATCTAATTTAACTAATTTAATCTGAACATGAACTATCTTATTATAAGTTGAATATTTTTAAAGCAAAAGATCCTCTTCTGGTCCCAACAGGTTTGTAATTTGGAATAAAATCAAGTAAAGAAAAAACAAGTAGGAAATGGAGAGGAAAAAAAAAAGTGATACGTACATTTCGCTGTTTGGGACCTCATATACTTTGCTTTGTTCATAAATTAATATTGAGAAACATTGAGAATCATCAATGATGCATGCCAACTTTAATTTTCTTTATATACTTTGCTTTGATCGGAGCATCATACATACATACATACATACATACATACATACATACATACATACATATATATATATATAAAGCAATCTTCAGAATATTGCCACTTTCGAATAATGACTACAGAAACTAACACAGTAATAATATATATGCATGCAGAGTATTGTGAACTTCAACGATTCATCAGTTGACAACTCAAACTCGATCTCCCCATCAACCGAACTGATCTCGTATACAAACCCATCCCAGCCACAGCTGGAACGTAGGCTCCGTCCACCACATGACCACCCGCTAAAATGCCCTAGATGTGATTCCTCCCACACCAAATTCTGCTACTACAACAACTACAGCCTGTCCCAGCCCCGTTACTTCTGCAAGACCTGCCGCCGCTACTGGACCAAAGGTGGCTCCCTCCGCAACGTCCCTGTCGGTGGAGGCTGCCGAAAGACCAAGAAAAAGTCATCAGCCACGGTCCAGCAACCACAGCCTGTTAACATGTACCGCCACAGCAATCCACTGACCACAAATCTTGACTATTTTAACTGTGCTGGTCTAGGGATAGAGGAGAATGGTTGTTTTAATTCTGATTTTGGGTTTTCTTTACTGGGCTATGAAAAGGAGGCTGAGGTGAAGCCCATGCTGTCGCTGGAGTGGCAGGAGCAAGGATGTGGCAGTGATTTGTTTGGAGGGTATGGGCTTAACGGGTTGTGGGCTGGCATGGTTAATGGGTACGGTAATGGGTCTTCCTCATCTGCTGCCATGTGAAAGTGGTTTAGATTAATTTGTTACTAGTTTGTGTTGCTTCTTGCTTCCTTTGTTATGCAGAAGAGAGGACTAGGCCTACATTACTTGTTTTGATTTGTGATGTTATGTTTTTTCTACTATTTTTTTTCCAGCCTTTTCATTTTAGTTATGGCCTAATGGATGAGCTATTGTTAATGAATTTGTGTTTGATCCTGCATGTAGTAGAAGAATGACTAATTGCATTACTGATATGTATTTTATCCAAGTTTGAAATGACTTATTATACTCGGTTGGCAATGAAACCACAATCGCGCGAGCTCTCTCTGTCTAACCTTATAGACTTTGCCACTTTTTACCTCACAATGTAGCAATTTCCGATCAAAGATGATTTGTACGCATTTGAAATGGGTAAGCTGAATAAAATAGAAGGGTTAACGCTATTCATTATATATAATTTTAGAATTTTGGAGAGATAGTGAATCCCATCTCCAAACTCTTCTATTGTTTATGTTCACCGAAGGGTAAAACGAAACTGTTATTCCGTGGTTAGTAGAAGGATACTGAAATCAATCATAAGATTCATAACCATGATATCCATTAATTAATTGATATTCTGTTGATTGAGCTTTTCGTATTTGTAGAGTTAGATACACAGAAGAAGATTTGATAATGATGGCGCACAATATTTAAACCCATAATATATTAATTTAGTAAATAATAATAAAGTAGAATAATTATACCATGTTTAATCCTGATATTATTAATCTCTCGTTGATTCTCTTTTGTGACTTTACCCTTTAGTCCATGTAGGTTTTTCTTCAAATTTTTTATTAAACCATGTGGCATCACCGCACGCGTTTTGCGCGTGAATTATTTTTCTATAAATTGCGTATGTTTAATATATTCAAAAGAAAATACTTTGCAAAAATAGTTAGCTATACTTTTGCGTTGAAATCATGTGTAGTTAGTTTGAATGTTTATTTTGAAGTTACAATATTTAATTTTTATGTTAGTTTGAATTTTTATTTGTTAGATCTTATTTTTATATGATATTAAATTTTTCATAATATTTATGAAAAATTGTTTCAAATTTGTAAAGAAAATATATTTTTTAGATCCAATTTTTAAGCGGTATTAAGGTTTTATAATATCTATATATATGCGCTTTTGATTAGTTCAGGTCAACATAAAAAAATGTGACACGAAAGATATTACGACTATTATTAAAAATTTGTAAAGAAAACATACTTTTTAGATCATATTCTTAAGTGATATAAAGGTTTTATAATATCTGCAGAGGAGCGTTTTTGATAGCTCAGGTTAAACATGAAAGATATTACAACTATTTTAGGATTAAATGCTATTTTTTCGGAACCATCAAGATATTTTTGAATTTTTTTTTTTTGAAATTGAGTATATAAATGACAATTTTTTAAGGAATCGTATATAAAAGGCAATTTTGGAAGTTCGATCAGACCAAAAAGTAGCATTTCTATTCCAAGTATTAATAAATATAATAAAATAAAATATTATGTACTATCATCATCTTAATTCTTTAAATTCTAAATCTTTCATCAATTCTCCCTCATGGATTTATCTTTGTCGAGGTGTCTACATGATTGCAATCCTCTTTTCTATTTCGTCGAGGATTCGGATTGCTCAACATAGAACGAAAAAGTGGCGATCTCTTCTTTTATCATATAGATCTTACGTGAAGCAAAGCCAAGATTGGTCGGCAAATTTTAAAACAAAGGCAAGATTTAGTTTTATGAGAAAAATATTCCAGACGAACAAGCTTATCAGGCAGATCTTGAGCAAAGCAACGAGCTAATAACAACAGACGATCGTACTGATTTTGGACCTCTGAACGATAAACCTAACATTTTGGTAGAAGCATTCGAGAGTATGGAGGAAAATAACTTAGAATATGAGACCGAATCGAATCGGAAGACGATGAGGATTGATATAAAATTATGTTGAATTCTTATGTATTATGCAATTTATGTAATTGATGAGATTTTTTTGCATCATTTATGTCATTACATCTATGTCATTACATCATTTACATCATCTATGTCATTACCATTTCTGTCATTTATTTAACAATTTATGTTAAAATACAATGTATTCTGCTTATCATCGGAATATGAGGCCCAATCTAAATCAGGTATACTTTACACTTTATGTACTTTATTTTATTTATGTCATTTAACAATAAAATATATTTCGTTATTATGCTATTATTCTCTTTTAAAATGATGTGTCTGTGACATGTATCATGTCATCCAGAAGGAGGAGTTCTTCTCATTCTTCAGGAGGCGATGACAGCGGTCCATCAATAATAATATCTTTTTTTTATGATGCCATGTAGGAAAGTTCTAGAATTGAATAAAATATTTGTTGAGGAAAAGAAAAATCTAGAACAAAAACAAAATAAAATGATTACACTTTATTAGGAAACAAAAGGAAGAAATAATAAATTAAGGGGGTTATTGAGAGAACATTCTAGAGGAGGGGCTTTATAATAAAAATACCATTTCCTCTCTTCTTTCTCTACTTACAGTACGTACACCAATTTTAGAAACAGAAAGAAGAAGAAAAAAGAGAAACCTAAAACCTAATTGCTAACCCTCTCATCCAAATCCAAAAAAAAATTTTTAAATTGCAATCAAAGTTTAAAGAGAAAAAGATTCCCAATTCTAAAGAGTAATTATCTCTAAATCAATCATTTTCTATTTCATTCCTTTTGTTTTATGAGAATAGCTATTTAGGGTTTTCCTCTTTTGTTTAGCAATTGAAGGGGGGAAAGCTTCAAGCAATCAAGGGCTAGCTGAATTAGAGCTTGAAAATTGCAACTTGAAGCTTTAAGTGAGTGAAGTTATAATCATATTTTGTTTTATACTATTTATCATATATGCATGCAAATATTGGGTAAAACTCTTGAATTATTATTGCCCGCGCATTCGTTAATTCATGTGTTGATGGAAAAAAAAGGAATGCATGAATGGTGTTTGTTTATTTGCCACAATTAGTTATAGTTTTCTCCTCTTCGAAAAAAATGTTTTAAAACTGTAAAATCGCAGCACAGCTTAGAACGGGACTGTGCCGCTCATTCAGAACTGCACTGTGCAGCCCAATCAAGCTGTAGGTGTAGTCAGACCGGCTAAAAAAACAGCCCAACTCGGACTGCACAGGTGCAGCCCAGGCAGCCGCATGTGCAGCCACTACGGGGTGCAGCCTCTATGGGCTGCATGCACAGCCCCGGAGGTCTACACAGCCTAGGGGGGACTACACAGATTTGCAGCCCTGAAAGGCTGCACAGATGTGCAGCCCGGGGGAGGCTGCACCCGGTGCAGCCCAGTCTGCACGGGTATGCAGCCCAGGCTGCACGGGTGTGCAGCCCAGGTGGGCTGCGCACAAGTGCAGCCCTGAGGGGGGCTGCACACGTGTGCAGCCCTGGGGCGTGCAGGGTTGCACACTACAGCCCTGGGGCTGCACACCGGTGCAGCCCATCTCGGCTCCATAAAGGTGTGCAGCCCGCCCTGAGGGCTGCTCACCGGTGCAGCCCAGGCTGCAGAGTTGTGCAGCCCAGTCTGCACTTGTGCAGCCCGCCCTGGAGGGTACACACTGGTGCAACCTGCCCAGGCAGCACAATTGTGCAGCCCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	QGH84103.1	7.2e-47	dof zinc finger protein DOF5.6
Swissprot	Q9FM03.2	1.8e-31	Protein PHLOEM EARLY DOF HCA2
trEMBL	A0A649UCE8	5.2e-47	Dof zinc finger protein DOF5.6

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62940.1	60.98	2e-35	146	DOF5.6;HCA2	Dof-type zinc finger DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g296884	AT5G62940.1	123	32	3	6	115	4	123	60.98	2e-35	146
g296884	AT5G60200.1	170	93	3	48	216	39	202	41.18	2e-28	123
g296884	AT3G45610.1	127	52	3	45	168	21	138	49.61	3e-27	119

Ortholog group

Species	Genes
Allium cepa	g296881.t1; g296884.t1
Allium fistulosum	AfisC2G03598
Allium sativum	Asa0G04232.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g47810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	63	119	112.4	7.3e-33

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009790	P	embryo development
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0010065	P	primary meristem tissue development
GO:0010067	P	procambium histogenesis
GO:0010087	P	phloem or xylem histogenesis
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048316	P	seed development
GO:0048507	P	meristem development
GO:0048508	P	embryonic meristem development
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network