Detail information of g297428


Location
GeneChrStartEndStrand
g297428Scaffold_63900:HRSCAF_446986135938162708+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020252675.13.1e-112LOW QUALITY PROTEIN: PHD finger protein ALFIN-LIKE 2-like
SwissprotB8AMA8.21.4e-101PHD finger protein ALFIN-LIKE 3
trEMBLA0A6I9R7704.7e-110PHD finger protein ALFIN-LIKE 2 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G05610.171.011e-84 310AL1alfin-like 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag297428.t1; g432354.t1
Allium fistulosumAfisC7G00239; AfisC8G02048
Allium sativumAsa1G03140.1; Asa3G04735.1
Arabidopsis thalianaAT5G05610.1; AT5G05610.2
Oryza sativaLOC_Os03g60390.1; LOC_Os05g07040.1; LOC_Os07g12910.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF12165.5DUF3594Family47172215.51.2e-64
PF00628.26PHDDomain22427241.21e-10

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001067Fregulatory region nucleic acid binding
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0042393Fhistone binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0044212Ftranscription regulatory region DNA binding
GO:0035064Fmethylated histone binding
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:0140030
GO:0140034

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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