result

Gene information

Detail information of g298262

Location

Gene	Chr	Start	End	Strand
g298262	CHR2	332981977	332983897	-

Sequences

CDS

Protein

Gene

>g298262.t1
ATGGAGAATAATAACCAACAGCCCCCACAGCAGCAGCCACCACAGCCGCCGCCGCAGCACACGTATTCAACTCCATTTCATCACCTGCTGCAGCAACAGCACCAACAGCTACAAATGTTCTGGAACTATCAAAGGCAGGAAATAGAGCATGCAAATGATTTCAAAAACCATCAGCTTCCTCTTGCTCGCATCAAGAAAATAATGAAAGCAGATGAAGATGTGAGAATGATATCTGCCGAAGCTCCTATACTATTTGCCAAGGCTTGTGAGCTGTTCATCCTTGAACTAACTATTAGGTCATGGTTGCATGCAGAAGAAAATAAGAGGCGCACTTTGCAGAAGAATGATATTGCTGCAGCTATTACAAGAACTGATATCTTCGACTTCCTAGTTGATATTGTGCCTCGAGAGGAGATAAAAGAGGTAACTTGTCTTAACTTGATGATGATAACTGATAGTGATTGCCAAACTGCGCCACACCTTGATGATGGCACAACCTGTATGCAACAGTTAATCACAGTAACTGGTGGGTGTGGTAATAAATACTTGAGATTCATGTGCACTTCAGTAAATCATAGAACATTTTCAACAATCAAATCAGATAATATTAACAAAAAAAAAAGGTAAAACAATCTAATTGCGTAATTATGCAATTCACTAGTTATCTAGTTATCATGCAAGCAAAATTTAAGAGTTGACTGTTGCTTCTTGTTAACCAAACACTTAAGGAAATTTTGTTGTCTTAACCATTATATACATATATAGGTCCTATCACCAAAATGAAGTTCAAATATAAAGAAGAGGAAATTAGTTTAAAGGAAAAAATTTGAACCATATTTTAGTCTGAAGTACACAAGATTTAAAAGTTAGTCATATTGAATACTATATTAACATATCATTAGACAAAATAGAATACTATATTAAACTAGCATCAAAAAAATGGAATGCTAAATTAAACTAGCATCGGATGAACTATAATAGAACTAAAATAGCAATCATCTTCACAGTTAAAGAAATGTCAAATTAATGTATCATCACACGTATACAATGCTATGGTCATATACGTTACACATTTATAATGCTAAGTTTTTATAGCATTCGTTTTCACAGTTTATATGGCATCTATTTTATCTTATGCTATATATATTAATTGTAGCATTAAACATGATTCAAACTAAATTTTAAAACTTGTATCCTTCATTCAAAAATATGGCTGAAGTTTTTCTCCCTCTATTTTCCTAAATAATAACTAAACGTGGAAACTCTAGGTTGCATGCCTCTACTTTCAGTCTGACGTGTAAACTTTAGTGATATATGTTCTTACCCATTAACAGTAAAAGTTCATAAATGCTAAATTTATTTAGGCACAAAGTTAGCTGTTATACCTCAACTTTCAGATGAGACATCACAGGCATCAACGTCCAGACCGACTTGCAACTAATCAGAGATAGCCAGACTAATCATCAATGTTATTTTATCATCAATAAATTCTTCATATACCACTTCATGTCAGGATATAAAAACTTAAACCCAGACTCATAGGCTACTAGAGCCCCAGATGTATAAACACATCACACATGCATAACCTGGATGTGAATTCCAACAATACACAGGCGCGCACACACATTTGTGTGTATATAGTAAAATAATTAAATGTCCTTGATATCAGGAGGAAGGAGCAAGTGGAATTGGAATGATGGCAGGAGGAGCAGCAGCAGGAGTTCCGTACTACTATCCACCAACAGGGCCAGGAGTAATGATGGGACAACCAGCCATGGATCCAAGCATGTACATGCCACAGCAATGGCAGCCCATGTGGCAGCAGGGCATGCCAGATGATGGTAGTGGAAATATGTATAGTGGACAAGGGTATTCTGGTCATTCTGCGCCACAGTCTCCACCGCCGTCTTCGGGTTCTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008798939.1	6.3e-63	nuclear transcription factor Y subunit C-1
Swissprot	Q9SMP0.1	1.2e-61	Transcriptional activator HAP5A
trEMBL	A0A8B8J7Z8	4.6e-63	nuclear transcription factor Y subunit C-1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G63470.1	75.38	3e-70	261	NF-YC4	nuclear factor Y, subunit C4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g298262	AT5G63470.2	195	30	5	16	192	30	224	75.38	3e-70	261
g298262	AT5G63470.1	195	30	5	16	192	30	224	75.38	3e-70	261
g298262	AT3G48590.1	184	34	4	26	198	33	216	75.54	6e-69	257

Ortholog group

Species	Genes
Allium cepa	g298262.t1
Allium fistulosum	AfisC2G01915
Allium sativum	Asa5G01679.1
Arabidopsis thaliana	AT3G48590.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	58	121	73.1	1.5e-20

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0008150	P	biological_process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048519	P	negative regulation of biological process
GO:0048579	P	negative regulation of long-day photoperiodism, flowering
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0048586	P	regulation of long-day photoperiodism, flowering
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0051093	P	negative regulation of developmental process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0065007	P	biological regulation
GO:2000026	P	regulation of multicellular organismal development
GO:2000028	P	regulation of photoperiodism, flowering
GO:2000241	P	regulation of reproductive process
GO:2000242	P	negative regulation of reproductive process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network