Detail information of g299780


Location
GeneChrStartEndStrand
g299780CHR4236020600236037877-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020277398.11.5e-88uncharacterized protein LOC109851591 isoform X1
SwissprotQ5XF79.14.9e-04PBS1-like protein 18
trEMBLA0A8N4F1F17.6e-71uncharacterized protein LOC105053107 isoform X4

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G72650.137.322e-55 213TRFL6TRF-like 6

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag299780.t1
Allium fistulosumAfisC4G01186
Allium sativumAsa4G01065.1
Arabidopsis thalianaAT1G17460.1; AT1G17460.2; AT1G72650.1; AT1G72650.2
Oryza sativaLOC_Os02g53670.1; LOC_Os02g53670.2; LOC_Os02g53670.3; LOC_Os02g53670.4

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain37342026.84e-06

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000723Ptelomere maintenance
GO:0000781Cchromosome, telomeric region
GO:0000782Ctelomere cap complex
GO:0000783Cnuclear telomere cap complex
GO:0000784Cnuclear chromosome, telomeric region
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0003691Fdouble-stranded telomeric DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0042162Ftelomeric DNA binding
GO:0008150Pbiological_process
GO:0009987Pcellular process
GO:0016043Pcellular component organization
GO:0031627Ptelomeric loop formation
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032200Ptelomere organization
GO:0032991Cmacromolecular complex
GO:0032993Cprotein-DNA complex
GO:0034641Pcellular nitrogen compound metabolic process
GO:0042592Phomeostatic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0060249Panatomical structure homeostasis
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0070013Cintracellular organelle lumen
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0098687Cchromosomal region
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.