result

Gene information

Detail information of g301566

Location

Gene	Chr	Start	End	Strand
g301566	CHR2	248400872	248402636	-

Sequences

CDS

Protein

Gene

>g301566.t1
ATGGTTTTTCCTTCTTCCCTTCCACTCTATCAAGATCCTCCCACTTGGAACCAGGTATTAATCAACTTCCAAAAATCTATTTAAAGTTAGTGAAATATACCATTTCATGAATATACTAATTCCTTTTCGTTCTTTTTCTCTCTATTTATTTTTTATTTTTCAACCAGGATCAAGTAGTACTCCAACAGCAGCAGCAGCAGCAACAACAACAGCAACATCTTCAAATTGTTCCAGTCCAACCGTCTCGTTCAGATGGAGTTTTGGTGCGACCGAACTCCATGGCGGATCGAGCCCGATTGGCGAAGATCCCTCAGCCTGAGCAACCTTTGAAGTGCCCTAGATGTGAATCTACTAATACTAAGTTTTGCTACTTCAATAACTATTCTCTTTCACAGCCTAGACACTTTTGTAAGGCCTGCCGCCGCTACTGGACACGTGGTGGTGCCATGCGCAACGTTCCAGTTGGTGGTGGCTGCCGTCGTAACAACAAGCGTAACAAAAACTCAGCTGCTGGTAGCTCTTCCAAAAATTCAGGTTCGTTTTTTTCACATTTGCCTTATACTCTATCTTTTCTCTGTCATTACTTTCTTCCATTCTTATGGTTTTTTATATACGATTCTTCAAAAAATTTAGACAGAAATATCTTAGATTTAATTGAAATCTAGGGATTTAGTGGACATATTATTATTATTTTCCCCCATTTTTAAGTCTAGTGAAGTAAGACAGTGAATGTGCAGTGCTTTCTTTTTCTTTCTTTTTTTATAACTTGATAACTAACTGTTGAGATTTATGGACTTATACTCTATATTCTTGGTATCATGCTTTATACCATTTTATGTGGTGTGTTATATATGATTCTTAAACATTTCTTAATCATGCGATCAGACTTCATTTTCTTTTTTCTTTTTTTGCCTTAATACATCAACTGGTTCCATACATTGACTTATACTCTTTCTTCTTGGTATGCTTTCTGCCACTTTGTATGGTATATTTTACATGATTCTTCCACATTTCTTGATCATAAGATGAACAATAAACGGAAAAAAAGATATGGGTCGTGCAAACAACTCTCCATAGTCAGCACTTCTAATGTTTTCCATTTTATTTGTATAGAGCAGTTAAGACTGTGAATGTTAAATGCAAAATTCTTTTCCCAGTATAAATAGTTTTTTGAATTGATTTTTATATATGTGACATCTTGAAACTAGCAGCTACTGCAGATCGTCAAGCTGGTGACTCATCTGGAACATCGGCAGGCAATAATGCAGCAAGCTTTCCATTCATGTCGAATTTACATCCAATGATAGATTACACTTCACATGTTCCAAACATAGGGTTAGGGTTTTCTGGCATCCCTTCTATGAATGTGGATACATACCAGCAAGGTAATAGTACAAGTATGGGAATGGAGCAATGGAGGCTGAATCAGATACAACAGTTTCCGTTTCTGGGAGGAATGGAGTCTCAGATGACGCAGATGGCACCGGTGTCAGAGATTAACTATCCTTTTGATGGAGCTTCTTCTGTGAAAATGGAAGATAATCAAAGAGGGATGAATTTGGCAAGGCAGTATAATATAAATTTGGGTGTCAGTAGTAATACTAATAATAATGGTACAAGGCAGGTTGAACATTATTGGAATGGTGGTGGTGCTGGTGATGAAGGTGCATCTGATAATGCTACTGGGGATGGTGGCAATGGCAGTGGGAACTGGATGACTAATCTTTCAAGGTTCAATACTTCTTCAGCCGAACATCTGTTGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009402261.1	2.8e-59	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	Q9LZ56.1	6.9e-31	Protein PHLOEM EARLY DOF 2
trEMBL	A0A804JAP4	2.0e-59	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G55370.1	38.34	3e-41	166	OBP3	OBF-binding protein 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g301566	AT3G55370.1	326	167	13	1	299	1	319	38.34	3e-41	166
g301566	AT3G55370.3	270	133	9	52	299	101	364	40.37	2e-40	162
g301566	AT3G55370.2	275	130	12	1	253	1	264	40.73	6e-39	158

Ortholog group

Species	Genes
Allium cepa	g301566.t1
Allium fistulosum	AfisC2G03202
Allium sativum	Asa5G02661.1
Arabidopsis thaliana
Oryza sativa	LOC_Os03g60630.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	70	126	109.5	5.9e-32

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network