result

Gene information

Detail information of g305984

Location

Gene	Chr	Start	End	Strand
g305984	Scaffold_65000:HRSCAF_448086	392773	397813	-

Sequences

CDS

>g305984.t1
ATGCGACGCTGGATATGCTGTCAATGCATTTTTGATGATGCCCATAATCCTGATGAGAGCCAAACTCTTAAAAGTGCTAATAATTATGTAGATGGAAATCATAAAGGCAAAGGGTCTGGACCTACCATTTCACCGAAAGATGAACCTGAAAAGAAGGAAATAATTATCGAAGTTCCAAAACTGGCATTAGAAGAACTAAAAGAAAAGACTGACAATTTCGGGTCTAAGGCTCTAGTTGGGGAAGGATCTTATGGAAGAGTGTATTTTGCAGTTCTTTCCAATGGTCAACAAGTCGCTATAAAAAAACTTGATGTTTCACAAGAACCTGAGCCTACTAACAATGAGTTTCTGAACCAGGTGGCATCAGTGTCAAAATTGAAACATGAAAATTTTGTTGAACTGCTGGGATACTGCATGGACGGAAATTACAGGCTGTTGTCATATGAGTTTGCCACAATGGGTTCACTTCATGATGTTCTGCATGGTAGAAAAGGAGTTCAAGGCTCCCAACCCGGTCCTGCTCTTGACTGGATGCAAAGAGTGAGGATTGCAATAGATGCAGCTAAAGGTTTGGAGTACCTTCATGAGAAACATCAGCCTTCTATAATACACAGAGATGTCAGATCAAGCAATGTTCTATTGTTTGAAGATTTCAGAGCAAAGATTGCAGATTTTAATCTCTCAAATCAGGCTCCTGACATGGCGGCTCGTCTTCATTCTACACGTGTTTTGGGGACATTTGGATATCATGCACCAGAGTATGCTATGACTGGTCAGCTAACTCAGAAAAGTGATGTCTATAGTTACGGAGTTGTTCTTTTGGAGCTTTTAACCGGCAGAAAACCAGTTGACCATACCATGCCTAGAGGGCAACAGAGCTTAGTTACCTGGGCTACTCCAAGGCTGAGCGAAGATAAAGTAAAGCAATGTGTAGATCCAAGATTGAAAGAATATCCACCGAAAGGAGTTGCTAAGCTTGCAGCAGTTGCAGCTTTATGCGTGCAGTATGAAGCAGAATTTAGGCCTAATATGAGCATTGTAGTCAAAGCACTCTCTCCTCTCCTCGCCAATAAGCCACCACTTTTACCTCCGCCTCCAGCAGCAGCTTCTGAATCTTTAATCTAA

Protein

Gene

>g305984.t1
ATGCGACGCTGGATATGCTGTCAATGCATTTTTGATGATGCCCATAATCCTGATGAGAGCCAAACTCTTAAAAGTGCTAATAATTATGTAGATGGTACGTGTTTTGAATTTCTATTATTGGAATTTCCTTTTGTACCATATCACGTGAATACCATGTTCTGTAATATGTTAGTATGCACTATTTAAGTTTGATATTTTATTTTGAGCAATATAAGTTGATAGTCAGTGCTAGTGCTAAAACTTGAAAACACTGACACACTATTACATTTTAATTATCCCAAGGAACTGTACATAAGCCAGTTGGTTGTATTTGAACTTGTAATTCAGCTGTAAATTTACAACTAACTTCAACTAGCACTAAAATCTTTTGAAGAACTAAAACATAGATCTCGGTTCTTCCATACTGTGGAGATGATTGAGTTTGATGCAGCAAATGCTTTTGTGATACTTGGTGCGTAAGTACTTGTCTTTTCAGTAATGGGTTTCACATTCCACTTCGTCTACATATTGCTACTGCTTAAGTGGTTTTTGTATAAACAAAGCATTGCATAGTTCATAAATCTTATGATATTTTTTCTTATTCTCATTCTTAGTTCATAAATTTTCCGTGATATTTATTCTTCTTCTCATTCATGTCAAAATAGAGCCTATGTATGCACATCATAACTGGGCTCGGTCATTGATGGTTGTCTAACTTTTTTTTAAAAAAAAATTTGGCCATTATGTTTGCATATAGAATTGAAGTACTTTAGCTACATAACTAAATGTCTTACCATTATTACTTGTGGCCATTGGCAGGATAAATTATTCATTACATGTTATGTATAGAATGCATTCTTTTACCTGTTATCATACACAGACACTTTTACTTTATTTCATCCCATGTACATTCTATAATCTTATATTATAAGTTGGCTTCCAGGAAATCATAAAGGCAAAGGGTCTGGACCTACCATTTCACCGAAAGATGAACCTGAAAAGAAGGAAATAATTATCGAAGTTCCAAAACTGGCATTAGAAGAACTAAAAGAAAAGACTGACAATTTCGGGTCTAAGGCTCTAGTTGGGGAAGGATCTTATGGAAGAGTGTATTTTGCAGTTCTTTCCAATGGTCAACAAGTCGCTATAAAAAAACTTGATGTTTCACAAGAACCTGAGCCTACTAACAATGAGTTTCTGAACCAGGTTTGACCTTTAAACATATTACTTGTTTTTCTCTCTGTGCGATGATAAGTTCTTAGGTCTGTATTACATGATTACAAAAAGAAAAGGTTATGTTTATGTCATTCAGAACTAGATAAATATCATTCATACTTTGATGATCTTCATATAGATATATGCCTATAGATCTTCAATTAACAGATGCCAAAAAAAAAAAAAGAGAGAAGAAGAATTATTACCATTATTGTGTATTTTACGTTTTTATGACATCTAGACATAGAAGGAACAAAAATCAAAAATTAGGTATTGTTTACTTTTTTGTCGTGGTATGCATCAAGACAAGAACTTGTATTTATACTATCCATCCATCATGAGTTGCAAAAACCACAAAAGATCCATTAACTACCTTAATTAATTTCAAAATTGAGTGCTGTTACTTACGTATGTGCATGCGCGCATGTGTTACCTTGATAATGTTATGCTTGTACTAACTAAATGATAAATTAGAGTCGCACCGTAGAATTTCCGACTTCTACAACTATGAAAAAGTTACAACTAAATGATAAATTAGAGTCGTGCCGTAGAATTTCTAATCTCTACAACTATGAAAAAGTTACAGATTTCATTATGTGCCAGGTGGCATCAGTGTCAAAATTGAAACATGAAAATTTTGTTGAACTGCTGGGATACTGCATGGACGGAAATTACAGGCTGTTGTCATATGAGTTTGCCACAATGGGTTCACTTCATGATGTTCTGCATGGTAATTATATTTGTAGTAGAATTCATGACAATATTCAAATGACACAACCTAATTTTTTATATTGTAATATGTTGTTCAGGTAGAAAAGGAGTTCAAGGCTCCCAACCCGGTCCTGCTCTTGACTGGATGCAAAGAGTGAGGATTGCAATAGATGCAGCTAAAGGTTTGGAGTACCTTCATGAGAAACATCAGCCTTCTATAATACACAGAGATGTCAGATCAAGCAATGTTCTATTGTTTGAAGATTTCAGAGCAAAGATTGCAGATTTTAATCTCTCAAATCAGGCTCCTGACATGGCGGCTCGTCTTCATTCTACACGTGTTTTGGGGACATTTGGATATCATGCACCAGAGTAATCTCAACATACCTTGATGGTTTATTTTTCGTAATGAAATAAAACAATTAGATTGGTTAGAATTGTCATTTGTTTGGAGAATTACACTTAGAGCAAATGCATTCAGAAACCAACTGCCAAGTTAAAAATGAATTAAGAATGCATGTGTAAAAGATTTGCATTGCAACTGATGAAGCTCCTTCGCCAATTAAACAATATGTCAATTTAGTTGTCAAAAGTTAGCAACTCAGTTGATCAGGCAATTGGTGGATTTTTCAACCATATTTAATCAACTTTTAATTTCATTATTTAACTAAAGACCGCTGTTGGATGAGAACTCCTACCGAAATGTTAAATAAATTAGCAATTCAACTATGTTGATGGTGCATTGATAAATATCAGTTAGTTAGATTTTAAATTGACAATTCATAATTTGGTTAATAGTTGACAATGAAAAAACAAGCACAATTGCCCTTAACATAGGCAGTCAAGAATATAACAACCTAAATTTTGAAGAGAATATGGGTCATTAACAATGAATTCTTTGTTGGGTATAATGCAGGTATGCTATGACTGGTCAGCTAACTCAGAAAAGTGATGTCTATAGTTACGGAGTTGTTCTTTTGGAGCTTTTAACCGGCAGAAAACCAGTTGACCATACCATGCCTAGAGGGCAACAGAGCTTAGTTACCTGGGTAAGTTTGTTGCTTACCAATAGTATTAGCATGTATCCATTTACACATTTAGGAGCCACTGCCATAAAAAGTAAAATTCAGGGTTTGTTTGATTAGAAAACGAGTTTTGTGTTTTGTGTTGTGTTTTCAACAATGTTTTTCAAAATGCACGGGAGAGAGAAGTGAAAAACAGTCAATTTGGAGCATGATTTTAACATATAAAATAAAAAATGATTTATTGGTTGAGGTAGCTGGCTTCCACCGGTGAGGTCGAGAGTTTGATCCTCGCCAACTGCACTGTACATGTGAATATACCTGAAATATTGGATTGGAGCACAGTATATATTCCCTGAAAGTTTACAAGCAAAGTTGGTTTATTTGGGTCTTCAGAAAAATAAAAATAATTATCTTTAATATATATTGAATTTTGCCTTTTGTAAAATGTGAAAAGCTATCTTCATCATTCCCATTCTCACGTATGTTGTAATGAAAAGGATTTTCCAACCTTTCATTCTTTCGTATGCCATTTGAATTATATGTTGAAAACACAAAACTCGTTAGGCTTTAAATTCTTACATCTCATCTAAGATAGGATGGGATTACATTTTAGAAGTTATATTCTGTTCTCAACTCAAGCGCTTTGTAGTCTACTCCTTTGACACATCAGTTTTGCTGAGTACTCATACTGCCTATGTGAAGTTCAACTTTAAAAGACAACTTTTTTTTTTAACTGTATGTACCAGGCTACTCCAAGGCTGAGCGAAGATAAAGTAAAGCAATGTGTAGATCCAAGATTGAAAGAATATCCACCGAAAGGAGTTGCTAAGGTTTGTACTATGTGTTTTGTGATTCTAGTATCCTAATTCCTTTTCTATTATACATACAAGCATTCCACATCTGCCTTGCATGCTGTATTCATTCATTTATTTATGAAATTAGAATATGTACCACTGTCAAGCACATGTGTGGATATCACAATTTATTTACAAACTCCTACATGGTGAATATGGTTAATCTAAAGAGGCGAATTTTACCAAATTATCTATAATTTTATAATTAATAGTGTTATTTTAACAGTTTGTTTGATTGGAGATGCTTAAGAGAAGTTGCAATATTTGAGCAAATATTATAAACAAAACAGTTCATCGACCTACAAATTTTCTATGTTTCAAACAATATGGTCCCTTGCATCAAATACAGCACTAACATTTAAATTTAGTTCCAATTCATTTCTCATAAACTTTATATCCTTTTCTTTTTGAATAACCGAGTACACTGAATACCAATTGTAAACTTCTACGGTAGCGTTCTATTAAATGCCCACATTATGAGTATTAACAAATGGATTTGTGCCGTAGTTGGGGAACTTTTTAAAATTATATACTCGGTATTTATGATATTTTATTTCAAATTAAAATCTTGCATATGTTAATAATCTATATTTGTGATTTTATTTCAAATTGTATATGTTTAACAATACAGACAGAGTTAGAAAAATAAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGCATAGGTATCCTACATCTGAACTGAATTCTTTTTGTTAAAGAATCTCTTTCTAGTTGCTCTAGATTCAGTTCGAATAAAACAGATCCAACACACAGAAAAACGCTTAAACATTGGTTCAGGTCTCATAAGAAAAGGAAAAAAATTATCCTATTTTGCTCATTAAAAAAAAAATTCATTGCGTCCCTTAACTGAGTGTTAACTAAGCGCGTACTTGTAAGGAAAGACGAAATTACTTTCTATAACTTGAAAATTTTACACAAAGAAATATATTGATATTAGAGACATTACAATATTTCGCTTGTAATTTTTACTAGTAACATCCTGATTTATCTATGTTGACATGTGAATTTGACTGCCAATTTGTGCAAAAGAAAAAAACATTAACCATTGATCAAAATTATTTTGTGCAGCTTGCAGCAGTTGCAGCTTTATGCGTGCAGTATGAAGCAGAATTTAGGCCTAATATGAGCATTGTAGTCAAAGCACTCTCTCCTCTCCTCGCCAATAAGCCACCACTTTTACCTCCGCCTCCAGCAGCAGCTTCTGAATCTTTAATCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261502.1	1.5e-170	PTI1-like tyrosine-protein kinase 3
Swissprot	Q8H1G6.1	4.3e-154	PTI1-like tyrosine-protein kinase 1
trEMBL	A0A6P5EKB2	3.4e-164	PTI1-like tyrosine-protein kinase 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G59350.2	75.28	2e-154	542		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g305984	AT3G59350.2	356	84	3	1	355	1	353	75.28	2e-154	542
g305984	AT3G59350.3	356	84	3	1	355	43	395	75.28	3e-154	541
g305984	AT3G59350.1	356	84	3	1	355	43	395	75.28	3e-154	541

Ortholog group

Species	Genes
Allium cepa	g251134.t1; g259295.t1; g305984.t1
Allium fistulosum	AfisC1G08264; AfisC3G07558; AfisC4G03572
Allium sativum	Asa2G06246.1; Asa2G06260.1; Asa4G02787.1; Asa7G06452.1
Arabidopsis thaliana	AT1G06700.1; AT1G06700.2; AT2G30740.1; AT3G59350.2
Oryza sativa	LOC_Os01g67340.1; LOC_Os01g67340.2; LOC_Os01g67340.3; LOC_Os03g62700.1; LOC_Os09g33860.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	78	351	154.5	2.9e-45

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005911	C	cell-cell junction
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009506	C	plasmodesma
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019899	F	enzyme binding
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0019900	F	kinase binding
GO:0019901	F	protein kinase binding
GO:0023052	P	signaling
GO:0030054	C	cell junction
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0055044	C	symplast
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13436	PTI1; pto-interacting protein 1	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network