result

Gene information

Detail information of g31103

Location

Gene	Chr	Start	End	Strand
g31103	Scaffold_18652:HRSCAF_187136	165949	167822	-

Sequences

CDS

>g31103.t1
ATGGGAAGATCGCCAAACTATGATGCAAGCTTAACTAGGGGGCCATGGTCAAAAGATGAAGATGGGATACTAAGGAGTTATATCGAGAGAAATGGTGTTGGAAACTGGAAAGAGTTGCCTAAGCTAGCTGGGTTAAAACGATGTGGCAAAAGCTGCAGACTTAGATGGATAAATTATTTGCAGCCTGGTATAAAGAGAGGGAATTTCTCTGAGGATGAGGAAAAGCTCATTGTAAATCTCCACAAAGATTTTGGAAACAGATGGTCCAGAATTGCTGATCAATTGGAAGGCAGAACAGACAATGAAATAAAGAACTACTGGAACACAACAATCAAAAAGAAACTTTTAATGAAGGGAATAGATCCAGTAACACATCAACGAAGGGCCAATTTTAACATACTTCAAAATTTCCCCAATCTCCTTGCAACTGCTTCAAATTTGAATGATTTAGCACCAAACGCTTTGAATAATAATGATACTTTTCATCAGATTACACCTAATGTGCAACTCCTTCAAACTCTTATAAATAGCATAATCAATAGCTCTCTTATTCCAAACATGGAGGCAATGATTCAACTGCAATCACTCATTGCACTTCACAATTCGAATCATTCTACTTTGAATGGATTTGGTACGAACAATAGCAGTGCTGGTACCTCATATTTTAGCTCCCCAGCTACAAATGCTACGCCTTATGTGCAAAATACAGCTAATACAACTCCTTTGCAAGTGTCATCGTCCATTGCTGATCATGACAGCCTGAATCAAACTACTTTTGGTTATCCTGTTTTTGATACCAACGTTTTTGGCTTGTCGGGTTCATTTATGAATCATGGTGGATGTAACTCCAGTGGATTTGGTATGAACAATAGTAGTGCTAGTACCTTGTATTTTAGCTCCCCAGATACAAATGCTATGCCTTATGTGCAAAATACTGCAAATACAATTCTTTCTTTGCAAGTGTCATCGCCCATTGCTGATCATGACAGCCTGAATCAAACAACTTTTGGTCATTCTGTTTCTAATACCAACGTTTTTGGCTTGACGGGTTCATTCATGAATCATGGTGGATGTAACTCCAGTGGATTTGGTATGAACAATGGTGGCGTTGATGCTAGCACTAGTAATGTTAACGACACTACTGCTACTACTTCCTATTTTAGCTCCCCGAATGCAACGTTTATGCCTTTGCAACCAAGTATAAATGCAATGCCTTCTGTTCAAATAACATCATCGCAAAATATGTCAAGAAGTCAAGCATTTGATGAGGAAAATGTCACAAGTACGTCTTCTGACAGTCTAGAGTTCAACTGGAAAGACTTGTTAAGCGCTTGCAGCGGAACAGATATGTGA

Protein

Gene

>g31103.t1
ATGGGAAGATCGCCAAACTATGATGCAAGCTTAACTAGGGGGCCATGGTCAAAAGATGAAGATGGGATACTAAGGAGTTATATCGAGAGAAATGGTGTTGGAAACTGGAAAGAGTTGCCTAAGCTAGCTGGGTTAAAACGATGTGGCAAAAGCTGCAGACTTAGATGGATAAATTATTTGCAGCCTGGTATAAAGAGAGGGAATTTCTCTGAGGATGAGGAAAAGCTCATTGTAAATCTCCACAAAGATTTTGGAAACAGGTAATCTTTCATGCATATTTTTCCTTGATTATTTTTTAAGTATTTTGTTTTAGTTACTGAAATTTTGATTCATGGAAACCATCTTTAATCGTGTTCCTTTTTAGATAACTTGCTTGTGTACCTAAAGGATTTAGTTTCGATGCCCCTAGGCACATACTATGACATAAGGTCAGGGAATAAATTGAATCTCGTGTTGGAAAAATCACAATTATTAAGTTGAAGCTTAAGAAGGTTTTGTTTCCATATTTTGTTAAGCTGAATTAATTAGTTTTATTCTTTTATACATGAGCATTCTTGAATCTTGACTCATATTCATAAACTCATTTGTTCATGTATCATTTTCATACTCGTCATAATTTGAATTTGGCCAATATTTAACAACTATGTTCATATTGCCTTTCAAATTTAATACCGGTTATTTTTCTTTAAGATGGTCCAGAATTGCTGATCAATTGGAAGGCAGAACAGACAATGAAATAAAGAACTACTGGAACACAACAATCAAAAAGAAACTTTTAATGAAGGGAATAGATCCAGTAACACATCAACGAAGGGCCAATTTTAACATACTTCAAAATTTCCCCAATCTCCTTGCAACTGCTTCAAATTTGAATGATTTAGCACCAAACGCTTTGAATAATAATGATACTTTTCATCAGATTACACCTAATGTGCAACTCCTTCAAACTCTTATAAATAGCATAATCAATAGCTCTCTTATTCCAAACATGGAGGCAATGATTCAACTGCAATCACTCATTGCACTTCACAATTCGAATCATTCTACTTTGAATGGATTTGGTACGAACAATAGCAGTGCTGGTACCTCATATTTTAGCTCCCCAGCTACAAATGCTACGCCTTATGTGCAAAATACAGCTAATACAACTCCTTTGCAAGTGTCATCGTCCATTGCTGATCATGACAGCCTGAATCAAACTACTTTTGGTTATCCTGTTTTTGATACCAACGTTTTTGGCTTGTCGGGTTCATTTATGAATCATGGTGGATGTAACTCCAGTGGATTTGGTATGAACAATAGTAGTGCTAGTACCTTGTATTTTAGCTCCCCAGATACAAATGCTATGCCTTATGTGCAAAATACTGCAAATACAATTCTTTCTTTGCAAGTGTCATCGCCCATTGCTGATCATGACAGCCTGAATCAAACAACTTTTGGTCATTCTGTTTCTAATACCAACGTTTTTGGCTTGACGGGTTCATTCATGAATCATGGTGGATGTAACTCCAGTGGATTTGGTATGAACAATGGTGGCGTTGATGCTAGCACTAGTAATGTTAACGACACTACTGCTACTACTTCCTATTTTAGCTCCCCGAATGCAACGTTTATGCCTTTGCAACCAAGTATAAATGCAATGCCTTCTGTTCAAATAACATCATCGCAAAATATGTCAAGAAGTCAAGCATTTGATGAGGAAAATGTCACAAGTACGTCTTCTGACAGTCTAGAGTTCAACTGGAAAGACTTGTTAAGCGTAAATATTCGTATTCTTCTTGTTCATTGTCATTTTTCTGTCAATAAAAAGTATATCTTTTATGTTGACATTCATTCTTTGTGGTGTGTAGGCTTGCAGCGGAACAGATATGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	PIA58596.1	1.0e-51	hypothetical protein AQUCO_00500496v1
Swissprot	Q8GWP0.1	2.5e-47	Myb-related protein 39
trEMBL	A0A2G5ES76	7.3e-52	Transcription factor MYB41-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G16770.1	55.25	1e-50	197	AtMYB9;MYB9	myb domain protein 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g31103	AT5G16770.2	181	75	5	1	178	1	178	55.25	1e-50	197
g31103	AT5G16770.1	181	75	5	1	178	1	178	55.25	1e-50	197
g31103	AT4G17785.1	193	89	3	1	190	1	192	51.81	2e-49	193

Ortholog group

Species	Genes
Allium cepa	g31103.t1
Allium fistulosum	AfisC2G00931; AfisC2G00933
Allium sativum	Asa0G03989.1; Asa5G00960.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	13	60	48.8	5.2e-13
PF00249.28	Myb_DNA-binding	Domain	66	109	52.9	2.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001076	F	transcription factor activity, RNA polymerase II transcription factor binding
GO:0001134	F	transcription factor activity, transcription factor recruiting
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network