result

Gene information

Detail information of g312197

Location

Gene	Chr	Start	End	Strand
g312197	Scaffold_65835:HRSCAF_448921	85983	88028	+

Sequences

CDS

Protein

Gene

>g312197.t1
ATGAAAGAGAGACGGAAGATGCAAGTTATTGATCTTTCTCTTAATTTGCATGAGACAAACGAAGATGAAAATAGAGGTGACGAGGATAGAGAGTTGATGAAGAAAGAAGAGGAGAGCTGTACTGAAAAATTCATGCAGGCGGAAATAAATCGAATGAAGGAAGAAAATATGCATCTTAGAAAGGAGATTGAACGTGCCACGAATGATCACAACGATTTGCAGATGAAAATCGTAGCGATTCAGGAACAAAAGCAAACAAAGGTACGTATATATAGTTATGAGCACTCAATTATCACTATAATAACTATATGTTATATTAATCTTTTTTGCAACTTAATTATTAGGATTATACACTTTCGTTACACGAAAAGCATAGGCATGAAGAAGATGACCAAATCCAGAATACCAGCTTTGAGCTTGGCTTGTCCCTAGGAATGAATATTCAGCAGGATAAAAATGAAGACAAGGAACAAGATGAAGAAAAGGGAGTTATGGACAGATGGGTAACAAATGAAACAGATATTAACATGAAGACTAAGTATGAATTTTCAGGGGTGTCCAGTACTCAAAGTATTAATCCAAATAATAGAAAACCTAGGGTTTCCATCAGAACAAGATGTCAAGATTCTACTGTAAGTTCTTTAAAACTAAACTGTTTTTGTTCAGTGTCAGAAATTTGAATAAACTGACATACTTAAGCATACTACTACAAAATACTGCAATGCAGTGCCTCTAAGAAACATCTCATGCAAATTGTTGAGATGGAAAACTAGAGGTGCAAATTTATAATCCAACTACAACAAGGGATCTCTTGCTAATGATACAAAGTGTGCATGAGTGCCACAGTGCCTACCCCTGGGTCTTCAGAATAAAATTTGCAACATTGCAAATGATGAAACAGTTAATGATGTTTATTGTAGATATCATAGTATATTATTACATACATAATAAATTATAGGTTAAATAATGCTTGATTATAAATGTGGATCGTGTTTTACAGATGAATGACGGATGCCAGTGGAGAAAATATGGGCAAAAAGTATCAAAAGCAAATCCATGTCCACGGGCTTATTACCGGTGCACTGTTTCCCCTGGATGTCCAGTGAGAAAGCAGGTAAACTAAAGCATACTTATATAAAGAAGTTGATCGATCTTTTAACTTGTAAGCTTTTGTAATGAGTGCACACCGTTCAAACTTCAAAGCTTGATTTCACAATATATCTTACTGCAAATTTAGCTAGGAATAAAATGCAGGTATAAGAAAATGTATTATCTCTAGCTATCTATATATCATATCCTAGTCCACCTAAATTTTCATAATTTTCAGATAAAAGAAACAAACTAACTATACATATCTGATTCTATCGGCATACAAAACACCAATTTTGCAGTATCAGCTGCTGATAATTAATATGTACCCTTTCACAACATTAATAATAAAAGATCAGTATGAACTTTATAGCTTTGATGCCCTGAAAGAGCAATGTCTATTTATGCATTTATCTATTGATTCAAATATCATGGACTTTAATGATATACTGAAATAAAATGCTCAGTGCGAAAAGCACTATACTTTGTTTCACTTTACATTTTGTACTAGTTTAACATTTCACATTATACCATGATAGAATTTGCTCATGTTATTAAAATAAAAAAGAGTTTATAGACTTAAATCCTTGTGTACATTAAACACTAAGCAAGCCAAAATAATGTTTAGAGTGAAGTCTCAAACTAAACATGTGTGTGCAGGTACAAAGATGCATGGAAGACATGTCAATACTAATAACAACATACGAAGGAAACCACAACCATCCATTGCCTGTAGGAGCAACTGCCCTGGCATCAACTGCCACATCAGCATCTCATGAAAATTATCCTCAGATGATGAATTCAACTTCTAACAATTACCTTAGCCAGTACTTATCAAACCCAGATTCCCGTTCTTTATCGCATAATGATATCATAAATGCACCAAGCTCATCTATGCTGTTCAGATATCCCTGGCAGACAGATAATAACAGCCATTCGGAGAATTCATCGAGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	RWR92848.1	6.1e-51	putative WRKY transcription factor 9
Swissprot	Q9C9F0.1	2.9e-42	WRKY DNA-binding protein 9
trEMBL	A0A3S4PNI8	4.4e-51	Putative WRKY transcription factor 9

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68150.1	40.00	2e-56	216	ATWRKY9;WRKY9	WRKY DNA-binding protein 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g312197	AT1G68150.1	320	137	8	18	311	55	345	40.00	2e-56	216
g312197	AT5G15130.1	296	122	10	13	259	20	301	37.50	3e-44	175
g312197	AT4G04450.1	293	144	6	10	259	78	366	34.81	1e-41	167

Ortholog group

Species	Genes
Allium cepa	g312197.t1; g313397.t1; g91874.t1
Allium fistulosum	AfisC1G04616; AfisC1G07549; AfisC4G06400; AfisC6G04806
Allium sativum
Arabidopsis thaliana	AT1G68150.1
Oryza sativa	LOC_Os02g53100.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	185	243	90.8	4.7e-26

Gene Ontology

Accession	Ontology	Name
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network