result

Gene information

Detail information of g315620


Location
GeneChrStartEndStrand
g315620CHR64439282744397283+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_009393272.13.7e-54PREDICTED: MADS-box transcription factor 29-like isoform X2
SwissprotQ6H711.11.6e-49OsMADS29
trEMBLA0A804IFY12.7e-54MADS-box protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G23260.247.069e-38 153ABS;AGL32;TT16K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag315620.t1
Allium fistulosumAfisC6G05313
Allium sativumAsa8G01937.1
Arabidopsis thaliana
Oryza sativaLOC_Os02g07430.1; LOC_Os04g52410.1; LOC_Os04g52410.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105792.66.7e-27
PF01486.14K-boxFamily8316881.05e-23

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000271Ppolysaccharide biosynthetic process
GO:0008152Pmetabolic process
GO:0001558Pregulation of cell growth
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0005975Pcarbohydrate metabolic process
GO:0005976Ppolysaccharide metabolic process
GO:0005982Pstarch metabolic process
GO:0006073Pcellular glucan metabolic process
GO:0006355Pregulation of transcription, DNA-templated
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0008360Pregulation of cell shape
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009250Pglucan biosynthetic process
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009908Pflower development
GO:0009987Pcellular process
GO:0010154Pfruit development
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010941Pregulation of cell death
GO:0010942Ppositive regulation of cell death
GO:0016051Pcarbohydrate biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019252Pstarch biosynthetic process
GO:0022414Preproductive process
GO:0022603Pregulation of anatomical structure morphogenesis
GO:0022604Pregulation of cell morphogenesis
GO:0030308Pnegative regulation of cell growth
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0033692Pcellular polysaccharide biosynthetic process
GO:0034637Pcellular carbohydrate biosynthetic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0035670Pplant-type ovary development
GO:0040008Pregulation of growth
GO:0040034Pregulation of development, heterochronic
GO:0043067Pregulation of programmed cell death
GO:0043068Ppositive regulation of programmed cell death
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043455Pregulation of secondary metabolic process
GO:0043900Pregulation of multi-organism process
GO:0044042Pglucan metabolic process
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044262Pcellular carbohydrate metabolic process
GO:0044264Pcellular polysaccharide metabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045595Pregulation of cell differentiation
GO:0045926Pnegative regulation of growth
GO:0048316Pseed development
GO:0048367Pshoot system development
GO:0048437Pfloral organ development
GO:0048438Pfloral whorl development
GO:0048440Pcarpel development
GO:0048467Pgynoecium development
GO:0048481Pplant ovule development
GO:0048506Pregulation of timing of meristematic phase transition
GO:0048509Pregulation of meristem development
GO:0048510Pregulation of timing of transition from vegetative to reproductive phase
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048530Pfruit morphogenesis
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0051128Pregulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051302Pregulation of cell division
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0071704Porganic substance metabolic process
GO:0080060Pintegument development
GO:0080090Pregulation of primary metabolic process
GO:0080154Pregulation of fertilization
GO:0080155Pregulation of double fertilization forming a zygote and endosperm
GO:0090567Preproductive shoot system development
GO:0099402Pplant organ development
GO:1900376Pregulation of secondary metabolite biosynthetic process
GO:1901576Porganic substance biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000029Pregulation of proanthocyanidin biosynthetic process
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2000762Pregulation of phenylpropanoid metabolic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090698
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K02437gcvH, GCSH; glycine cleavage system H proteinEC:- Glyoxylate and dicarboxylate metabolismko00630
Glycine, serine and threonine metabolismko00260
K09260MEF2A; MADS-box transcription enhancer factor 2AEC:- MAPK signaling pathway - flyko04013
Apelin signaling pathwayko04371
cGMP-PKG signaling pathwayko04022
Parathyroid hormone synthesis, secretion and actionko04928

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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