result

Gene information

Detail information of g318239

Location

Gene	Chr	Start	End	Strand
g318239	Scaffold_66706:HRSCAF_449792	28660	30831	-

Sequences

CDS

Protein

Gene

>g318239.t1
ATGAGTAACAAAAAACACCATGAAATTCTTCTAAACAAATACGAGCTTGGGCGCCTGCTTGGTCGAGGCACATTTGCAAAAGTATACTATGCAAAGTCACTTCCAGACAGCTCATCCGTGGCTATCAAAGTGCTGGAGAAGCCTGAAATAATAAAATCAGGCGTTGCTCCCATGATCATTCGAGAAGTTTCTGCTATGCGCCGCCTTGCCCATCACCCTAATATTTTAAGACTGCATGAAGTCATGGCTACAAAATCAAAGATATATCTTGTAATGGAACATGCTAAAGGCGGTGAGCTCTTTGCCCGCCTTGCTCTTAGGGGTAGATTGCCTGAACCAGTAGCAAAAAGGTACCATCTTTATCTATATTTAATGTAATTTAACAATATTTAACGTAAGACATTGTATGAATTTTGAATGATTTCAGGTACTTTCAGCAGCTAATTGCTGCATTGAGATTCTGCCATGCGCATGGAATAGCACATCGTGATTTGAAACCTGAAAACTTATTGCTTGACCGCGATGGCAACTTAAAGCTGTCGGATTTTGGACTGTCGGCGCTCTCCGATCATCAGAGAGTTGATGGGCTTCTGCACACGACATGTGGCACGCCTGCTTACACTGCTCCTGAAGTTATTCGTAGAAAAGGATATGATGGAGCTAAAGCTGATGCATGGTCTTGTGGCGTTATTCTCTATGTGCTTCTTGCAGGTCTTTTCTATTTTTAAAACTATTGGTCAATCTATAGTGTTTTAGTCGACAGTACATGCTCATAAGATAATACAAGTAGTGATTTGATATATTGGTCTAGATCATCAATTGTTGTATTTTATAATATTCTATGCTAAAATGCAACGATTGATCAAGATCGTAAGGCCATCTACAGCAACCCTGAAAATGCAAACGCACTTTATTTCCCAATTTTGAACGTCCATTAAATCAGCTTGTGTTGATATATTTCTTGAACTCTTGACAGCTGAACGTTAATTTTTTGAACATAGGACGTTCTTTTATTCAACTTCAGGTTGGACGTCCACAAAATAAACGTTCTACTTGCTTCAGTTTTCTGTTTTCCGAAACAGACAACCATAATGAATATCAAGCTGAATTGAGCCTATTGACCTTAAACTAACTGAATATTCAGTTGAATTTTGTGTTCATTTTAGATGTCTTTAGATTTCGTTTATTCTATGGCTAAAATCAATTGGGTAAACTTCTGTTTTAGAATGTGTATTTAACTTGCTCTTTGTTTCGAAACACTTAACAGTTAATATGCATCATTTGATCCATTTTAGATTACTCTTGGTTTGAACAGCCTATAGGCAAAGGGTGCATATGATAATCAAAAGCAAATGTCATTATGGTTTCATTAATGAAGTCTTTTAAATATCAACTTGTCATCAAAACATTACTTAATGTATATAGTTAAAATGTTTTCTTTCAACTATAGTAAAAAAAACATCAAAATTGACCTTTTTTTCTTTTATAAAGCAAAAGGCAGTTGGTTTTTGAAAGCAATTCCTAAACAATGATTTTCATGCAGGTTTTTTGCCATTTGACGATTCAAATCTGGTATCCATGTATCGAAGAATCCAAAAGAGAGAATATCAGTTCCCACCATGGTTCTCTCCATCAGCAAAGCGGGTCATATACAAGCTTCTCGACCCAAACCCAGCAACCCGGATCACAGTAGACGGGTTAATGGATCTTCCATGGATAAGAAGATCCTATAGCCTAGACGAAAAGCTTGATTTGCTTTCATACTTGCCACCACTTCCACCCTCATCTTCTTCTTTCTCATCTCCTCCATCCATGAACGCATTCGACATCATATCACTGTCACCCGGATTAAATTTATCAGGCTTATTTGAAGACAGTGGTAGTAAAAGTGAAAGGAAATTTACATCCATGGCCAGTTTTGAAAAAATAATGGACAAAATCGAGGAGGTATGTGCAAAGTTCGGATACGTAGTTGAAAAGAGAATATGTGGGATTGTAGGGAGAGGTAAATGGGGGGTGGTTATATCATTCGAGGTGTCGCAAGTGGCTTCGGAGATTCTTTTGGTCGAGTTGAAAATTGAAGGAGATTGCCGTTCAAAGTTGTGTTGGAATGAGTTAAGAGAAGAGTTTGGAGATGTGGTTTTTTCTTGGCATAAAAATGAAGATTTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010936028.1	2.5e-153	CBL-interacting protein kinase 7
Swissprot	Q9XIW0.1	1.4e-121	Serine/threonine-protein kinase SR2
trEMBL	A0A6I9S1H4	1.8e-153	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G23000.1	53.61	4e-121	431	ATSR2;ATSRPK1;CIPK7;PKS7;SnRK3.10	CBL-interacting protein kinase 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g318239	AT3G23000.1	416	180	4	8	417	19	427	53.61	4e-121	431
g318239	AT4G14580.1	417	181	5	9	415	16	425	52.52	2e-119	426
g318239	AT5G01810.2	428	194	6	4	415	2	421	49.07	3e-112	402

Ortholog group

Species	Genes
Allium cepa	g318239.t1
Allium fistulosum	AfisC3G01633; AfisC8G04497; AfisC8G04500
Allium sativum	Asa1G00290.1; Asa2G01532.1
Arabidopsis thaliana	AT3G23000.1; AT4G14580.1
Oryza sativa	LOC_Os03g43440.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	14	270	227.8	1.3e-67
PF03822.11	NAF	Domain	299	357	69.8	1.5e-19

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009409	P	response to cold
GO:0009628	P	response to abiotic stimulus
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K03116	tatA; sec-independent protein translocase protein TatA	EC:-	Protein export	ko03060
K03116	tatA; sec-independent protein translocase protein TatA	EC:-	Bacterial secretion system	ko03070
K12761	SNF1; carbon catabolite-derepressing protein kinase	EC:2.7.11.1	Autophagy - yeast	ko04138
K12761	SNF1; carbon catabolite-derepressing protein kinase	EC:2.7.11.1	Meiosis - yeast	ko04113

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network