result

Gene information

Detail information of g318590

Location

Gene	Chr	Start	End	Strand
g318590	Scaffold_66742:HRSCAF_449828	3816	6649	-

Sequences

CDS

Protein

Gene

>g318590.t1
ATGAGTTATGCTGATCATTATGAGCGAGTCATTATTAATAGTATTTTAAACATTCAAAGAGGAGCTGAGCCTGGTATTATGATCCACATACTTCCACAAGGACCTGGAATGTCCAAGGCTCGCAGTAAGCATGGATGGGGAACACAATTCGATTCATTTTGGTGTTGTTAGGTAATATTGCTATTCATTATTTCCATTAGAAATTTTACAGTTAATATATGATATTTTCTGTATTTGCAATGGTTTATAGGTTGATATGGTTCTTTATCTAAATCATAAATCATTTGGGTAATTTTTTTCTGTAGAGACCATCTTATGATGAGGGATTTCAAGATGCAGCAGCTTTATTCAGATACATGTATAGTTTTTGCCACCGCTTTCAAAAAAGTACCCAAGTTAAATAGGATAAATCTTATGCACATCAATAAAGATTTCAGAGATGGAACCACGAAAATAAACTCCAAACTGATATATAAAATATGAACATCTCCATAACTAATCTATTATGAAGACTTGAAATGTTAAATTTTTAAATACTCAGTGAATATTCTGAGCTAAATAAAGTAAAATTTCTTTTTTTTCCAATAGAAATTTGGAGATCAATGGATTCAAAAGTGCTTGTACAAGATTGTTCGGGCTGGAAAAATCAAATGTTTTACTGGAATAGTTATCCATATGAGCACCATTGAATAATGTGGTACAACAATTTATGAATCAGCTGAGACTTTTATTTCAAATAATATTGAATTATGTGAACATGCTTCCTACTGACATTTCAAATAATATTGCAAGCACATGAACTATACTTGCCCCTACTACTAATCTATAAAAGCATAAAGTATAGATTTTGAGAAAATGAAATGGTTTTGATGGATTGAGCTTTGCTTATTATAGAATATATTACATAAATCATGTATTGTCTCGGAAACAGCCAAGTGTCTTAAATTTTTCTTGCTAAAAGTTCAATGTTTAATTTTAAAATTATTGAGGAACTGAGGATAATGATACTGGCATTCAAGATGGTATACACGATTTAGTTTAGTGTTTGTATGATGAGTCCAATTTATAATCTCACATTATGGTGTATAAAGCAAACTATGAAATAAAAATGAAATAAGAGAGAAAAATTAATTTCTAAATTTAGTTGTAATGTTAAAACATCAAAATCAGTTTCAAATCATTATTGGTGTTAATTCTACTTTCTTTTCCATCACAGCATTTTAAATCAATTGCGTTAGAGGCTGATCATTTACTTAATGATCTGCAAAGAAGTCTCTTATGACTTTATCATCGTGTCAATCTTTTATGACATTTTAAATCAATTGCGTTAGAGGCTGATCATTTGCTTAATAATTGTGTTTATGCCTTTATTAATAGTGTAGTAGCAAATGACCTATAATTTTAGTGGATAACAAACTTTAAATTCTTGTTTCACATTGACTTAAAAGAAAGCAACATATATGTTGTTATCTTCATAGCAGTTTGATATGTCTAAAGGAATGAGGTGAAGGAAAAAAGTGGTTAATGCTTAATTCTGCGATAATATTTGATCTGTTATTAAATCAACAGCTTAGGCATCATTATCTTGTTAATAATCTAATTTTGTGATAGAATCTGTATGCATATTTAGAGCCAATGTGTTTAATGTTAACTTTAATCTAGGTCTGTAAGAGGTCCGAACATATGGGTATATTTTCTTCCTTGCCTGTTCAGTTAGTGTGATATTATGGGTTTGAGATTAATTTATAACAAATCAGTTTTGAAGCAAGTTACATAGTCTACTGAACAATTTTTATGCATTTTAATTTTGCATTCTGTTTGTCTAGGGGAGATATAAATGATCTTAATAAGCTTGTCTAATTTGTACAGTTATGACGACAAGACTAACAAAACGAATCTTGGAAAAACTGCAGCCTGAAAATTATCAGGTGTGCTTTCTATCAGTTGATGTCGCTACTTTTATTTTACTGTGTGAATGCTTGCAAAGTTGCAATGGCATTTTTTCTCCAAATTTCTATATGGTTTCAGTTTGATGTCATTATATTCTCTGCTTTTTCTGTAAAATATATATGATCTGCATCTATATACGATTGATAAAAAAAAATGACATATGAGTGTCCTATGCCAGAAATTTAGTATATGTATACTAAAGAGATGGGAGTACTGTTGTTCAGGTTCAAGTTTACTGTGAAGAATCTTAACTTTAACACACTATTTATGCCTTGTGTTAACTGTATTACATTATATTTATGTCTAAAGTTTAACCTATATTGGATGCATTTTATTCTGCAGCTGTGATTGGTGATGCGCTTGATATGGAGAAACCTATTGTCTTTTCTCATGCAGAAATTCTCGCTTCTGCGGATTACTTTTCTGATGCAAATTTGCTTGGTCATGGTACCTATGGTTCAGTCTACTATGGATTTCTTCAGGATCAGGTCTGTCTCTTAATTTATTCAAGAAATTATTTTAGCACTAGGGAAATACCACCTTATCATTTATGGTAGTTTTGCATCTGCAGGAGGTTGCCATTAAAAAAATGACTGCTACAAAAACAAGAGAATTTATCGCAGAGATGAAAGTTTTGTGCAAAGTTCACCATTCTAGTCTGGTATTGACCTTAATAAGCTTCAACTAATTTTGAACACCTAAAATTTGTGGCATAAACTGACTTGGCCTTTTTTATTCTCACTTTTGTCAAGGTAGAGTTGATTGGTTATGCAGCTAGCCGTGATGAGCTCTTCCTTGTATATGAATATGCTCAAAAAGGTTCCCTCAAGAGCCATCTACACTATCCACAAAACAAGGGTAAGATCACTGTGTTTATGGATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264956.1	2.0e-50	lysM domain receptor-like kinase 3
Swissprot	F4IB81.1	7.5e-42	LysM domain receptor-like kinase 3
trEMBL	A0A5P1EUY4	1.5e-50	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G51940.1	70.43	9e-45	176	LYK3	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g318590	AT1G51940.1	115	33	1	44	157	316	430	70.43	9e-45	176
g318590	AT3G21630.1	104	57	1	47	150	301	403	44.23	4e-20	94.0
g318590	AT3G26700.1	135	78	3	17	150	35	162	36.30	2e-17	84.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	72	159	59.1	3.5e-16

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0008152	P	metabolic process
GO:0002376	P	immune system process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0050832	P	defense response to fungus
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005488	F	binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006955	P	immune response
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009620	P	response to fungus
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009755	P	hormone-mediated signaling pathway
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009966	P	regulation of signal transduction
GO:0009967	P	positive regulation of signal transduction
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010646	P	regulation of cell communication
GO:0010647	P	positive regulation of cell communication
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019899	F	enzyme binding
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0019900	F	kinase binding
GO:0019901	F	protein kinase binding
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0023051	P	regulation of signaling
GO:0023056	P	positive regulation of signaling
GO:0031347	P	regulation of defense response
GO:0031348	P	negative regulation of defense response
GO:0032870	P	cellular response to hormone stimulus
GO:0033993	P	response to lipid
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0042221	P	response to chemical
GO:0043170	P	macromolecule metabolic process
GO:0043207	P	response to external biotic stimulus
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0045087	P	innate immune response
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048583	P	regulation of response to stimulus
GO:0048584	P	positive regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051704	P	multi-organism process
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071215	P	cellular response to abscisic acid stimulus
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:0071396	P	cellular response to lipid
GO:0071495	P	cellular response to endogenous stimulus
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0080134	P	regulation of response to stress
GO:0097305	P	response to alcohol
GO:0097306	P	cellular response to alcohol
GO:0098542	P	defense response to other organism
GO:1901419	P	regulation of response to alcohol
GO:1901421	P	positive regulation of response to alcohol
GO:1901564	P	organonitrogen compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:0140096
GO:1905957
GO:1905959

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network