result

Gene information

Detail information of g319674

Location

Gene	Chr	Start	End	Strand
g319674	Scaffold_66868:HRSCAF_449954	114840	121568	+

Sequences

CDS

>g319674.t1
ATGTATGACGACATCAACTCAATCCTATCACCGGATGAATTCTTATTTTCACACCTTGAGCTTGAATCCATGATCGATATGAACCCTTTTTCCACAATAGTCTCAGAGGAGGGAGAAGGAGGGAGGAGCTCGAAAATGGAGGAGGAGCTGTCTGGATCCATGAACGGACAAAATGCGGAGAATGGCATTATCTGCTCAACCGTGGAAAATCACAATGGTGATCACGAACCTGAAAAGAAGAAGAGGAAGCTAAGGCACACTCCGTGGCAGGTTCATGGAATGGAGATGTTCTTTAAGGAATGCCCTAACCCTGACGAGAAGCAGCGATTAGAACTGAGCAAGGAGTTGGGACTTACAGCTCAACAAATTAGATTCTGGTTCCAAAACAAACGCAATCAAATTAAGGTGCAACAAGACAAGAACGAAAATGCGATACTCAAAGCTGAAATAGAATACCTGAAAAATGACATTTCAAGACTTGAAGCTGCAATTGGGAACAAGACATGTCCTAATTGCAGTGGGATTGCCAATATTCTAGGACAAATGTCCTATGTTGAACAACATAATCTCCGACTCGAAAATGCCCGCCTCAAATATCAGCTTGAACATGCATCTTGCATCAGCAGTGCTTCTGGATACACAAATAATGCTGAAATGAAATCTTCTATTCATGATATGAATATTTATCCATCGCATTTCAACAACCAACAACAAGCAGCAATGGGAGTTTGTAATAGTATAATAGCTCCTGTTCAAGATAGCAGTATTTTAGTCAAGCATCAAGCAAAAAGATTGGCATTAGATTTGGCTATCACTGCTACTGAACATTTGTTGAAGTTATGTACAATGAATGAGCCTCTGTGGATTAAGACAACTGGAGAACTTGTTGCTGAAGTTATGAATTACGAAGAGTACAAGAGATTTTTTAATTGGCCAATCGAACTTAAGCAACAATGCCAAGGGTTTAGTATTGAAGCCACAAGAGATAGTGGGATTGTGAGGATGGATAGTATTACACTGGTTGATGCCTTCTTCGATGCTAATAAATGGATGGATTTATTTCCTACTATTGTTAGCAAGGCGAAAACATTACAAATTATAACCGATGGAGCATCTGGTTATCGCAATGGCTCTCTTCATTTGTTTTTTGCGGAGTTTCAAGTTCTTTCCCCATTGGTGCCAACACGTGAGGCGTGCTTTCTTAGATATTGTCAACACAACGTTGAGCAAGGAACTTGGTCCATTGTTGATTTTCCTATTGATGGACTTCATGATGGACTGGAAATGTCTTTGACTCGTTATAGGAGGCGGCCTTCCGGCTGTATCATTAAAGACATGACCAACGGTCATGCAATGGTGACATGGGTGGAACATGCAGAATTACAAGGTAAAAGAGTAGCACATCATATTTTTGATACAATACTTAATAGTGGTGTTGCTTTTGGTGCAGCAAAATGGCTCTCCATTTTGCAAACCCAGTGTGAAAGACAAGCTAGTCTTATCATGGCCCGAAACATTCCTAATCCTGAAGTTGTTCCATCTGCTGAAGCGAGAAAGAAGTTGATGAAATTGTCGCAAAGAATGATAAGAATATTCTGCGCAAACATAAGTTGGACCAACAACCAGACATGGACTGCGCTGCCTGAAACATCCGATGATACAATTAGAGTAATGGCTAGAAAAACTACAGAACTTGCCCAGCCAAATGGAGTTATTCTTACTGCAGTATCTACAGTTTGTCTTCCCTTTTCACACAGTCGAGTGTTCGAGCTTTTATCCAATGAGCAAAAGCGAACTCAGTTTGATGCGCTTTCTTACGGAAAATCGTTGCAGGAGGTGGCTCACATTGCAAATGGCTTGCATCAAAGGAATCGCATCTCTGTTCTGCGTGCAAATGCAACAAGCAGTCACTCAGCCAAAGACAAGACAGAACTCCTGGTACTACAAGAAAGCAGTACACACCAGATAGGTGGCAGCATTGTAGTCTATGCCCCGATCGATGGGGACAAGTTTCAGATTGCAATGAATGGGGAAGACCAATCATCCCATAATAATGTTCCCCTCCTTCCTACCGGATTTGTAGTCCTACCAGCTCCTTGCCCCGTTAACAATTCTTCCACTACCGGATGTCTTCTCACAGTGGGAATACAAGTCCTCGCAGGCTCCGCTCTGTCTGCCGATGAGGTTAGCCTTTCCACCATCATATCACTGACTACTCAACTAAGCAGCACCATGCAGCAGATAACCAACGCGCTTGGTAGTAATGGACGGAGTTACTCAGCTCTGGTGGATAACCGGTGCGAGACTTCAGCTACTGTTCTGGATCATATGATCAGGGATCTAATGGTTCGTGACGGTGCACTGTAG

Protein

Gene

>g319674.t1
ATGTATGACGACATCAACTCAATCCTATCACCGGATGAATTCTTATTTTCACACCTTGAGCTTGAATCCATGATCGATATGAACCCTTTTTCCACAATAGTCTCAGTAAGCTGTTTTTTTCCCCTACTTTTCTTCAAATCGTAAGCGATCAACTCCTATGTGATTTTGACTTATAGGAGGAGGGAGAAGGAGGGAGGAGCTCGAAAATGGAGGAGGAGCTGTCTGGATCCATGAACGGACAAAATGCGGAGAATGGCATTATCTGCTCAACCGTGGAAAATCACAATGGTGATCACGAACCTGAAAAGAAGAAGAGGAAGCTAAGGCACACTCCGTGGCAGGTTCATGGAATGGAGATGTAAGTTCTGCTTTTTTCTCTGCATGAGAAAATACCATGCATCAATATGGATCATTCAGATATTTCTGTTTCTAAAATTTCACATTTTGTTAGGGTTAGCACAGTTAGGTAATTAGATTTGGATATAATTAGGAGATAATATGATCTAAATTGTGATCATTCTTAATTAGTTAATCAGAATGACAGTTGGGTTAACCCAGAAAAAAACATCATAGCGTTATGATAAAATGAACAATTGAGCCTAAAGTGTTAAACCTAGTTTAGTGAGGTAAATCTTGTTATCCTGAAATGTGTTTGGGTCATGATTTCCATAATGGTGGTTCTTCATTATTTTTTTTCAATGGCAGATATTCAAAATCCTTACCAATACTTTGATATTTTTTTAAACATAATTTAGAAAAATTATATCTAACACATATTATTGGGGATATTTTGGTTAATGAGTCTAAGTATATGCATGAAGATTGAACTTCTTATATTTGCTATTATGTTTAAGTAGAGCTATTTGCATTTTGGGAACAAAATTGGTGGATTCATTTTTTAGCACAAATGGATGATTTTAAACCTTTGATATTTTAGGGCATAAGATATATTTATTGCTTAGCTATGGAATCTGACTGCAAGCTTACTGTGATAGTTTATGAAAATTGAAAAATAAATAAATAAATATATAAAAAGGATTAAAAAACACAATGCATTATGGATCATTTTGATAATTCAGTTTCTAACAACATACATCTTGTTAATTCGGTTTACTGTATATTGATATGATTATGGATTTATTTAGTGTATTAAATACATATTGTGGCTATAAATTACAATCAATCCGTCAGATGGCGTATCTGATTAGTCGAGTAGAAAAACATCACACATCGATAAACTAGACTGTCTAACCTAAAATATCACTCCTGATTTTGTTTTGTAAACCTAGTTATTTTGCATTCGTAATTGTTTCATAGTTTTCATTATGGTAGTGTTTCATTATCTTTTTTCAAGAGCAGGTAATAAAAATTCTAAGCAAATAGTGTTTGATACAAAGTAAATGCATTACGAATGTTCTCTTTTGCCGTATAGAGAAAATGCACGAAGATTGGACTTATATAGTTGATGTTATGTTTGTAGTTAGAATTTACATTTTGTCTCAACAGTTGATGGTTTTTAATTAGTTAACGCAAATGGTCCAAGTTTTGATCAGATACTTTTATGAAAGTGACTGCTTACTGCTTGTTGCGATTAGTTAGTGCAATGGTCCAACTCTCCACTGCTTACTGCTTCGCCAAGTAGGAATACACCATGTTCATAGACATTAGAACCTAAATTATTACATTAAATTTGGATAAAAGTAAACCAAGTTGCGATTCTGAGCTGTGTTTGTTGATTCAAATTTTACATAATTCTAGCCTTTCATTGTCCTTTTGCCATTGTGGGCAATCGAAATTCCTAGCAATAGTTTGGCAAAAAAATGCTCATTTTAACCATAATTTAATTGTATTAAAGGTTCTTTAAGGAATGCCCTAACCCTGACGAGAAGCAGCGATTAGAACTGAGCAAGGAGTTGGGACTTACAGCTCAACAAATTAGATTCTGGTTCCAAAACAAACGCAATCAAATTAAGGTATCATTTATCTTCACATTCTAGAACAAATCCATGGATTATATACTTACTAAATATGGATACATGTGTTGTAGGTGCAACAAGACAAGAACGAAAATGCGATACTCAAAGCTGAAATAGAATACCTGAAAAATGACATTTCAAGACTTGAAGCTGCAATTGGGAACAAGACATGTCCTAATTGCAGTGGGATTGCCAATATTCTAGGACAAATGTCCTATGTTGAACAACATAATCTCCGACTCGAAAATGCCCGCCTCAAATATCAGGTATATATACGTGATTCGTTTATATAATTAAGGAGAAATATGGAATTATGCATTCGTTTAAGTTTTAATAATTTTTTCTCTCAATAGCTTGAACATGCATCTTGCATCAGCAGTGCTTCTGGATACACAAATAATGCTGAAATGAAATCTTCTATTCATGATATGAATATTTATCCATCGCATTTCAACAACCAACAACAAGCAGCAATGGGAGTTTGTAATAGTATAATAGCTCCTGTTCAAGATAGCAGTATTTTAGTCAAGCATCAAGCAAAAAGATTGGCATTAGATTTGGCTATCACTGCTACTGAACATTTGTTGAAGTTATGTACAATGAATGAGCCTCTGTGGATTAAGACAACTGGAGAACTTGTTGCTGAAGTTATGAATTACGAAGAGTACAAGAGATTTTTTAATTGGCCAATCGAACTTAAGCAACAATGCCAAGGGTTTAGTATTGAAGCCACAAGAGATAGTGGGATTGTGAGGATGGATAGTATTACACTGGTTGATGCCTTCTTCGATGCTGTAAGTTTCTCTCACACACACAAATTATACACACACACACACACACATACATACATACATACATACATACATATCCATTTATGTATGTATGTATGTATAGACTGATTGATATATATGTATAGACTGATTGATATATGATGATATTTTTTCTTCTTATTGTGACAGATATTTTTGTTTTATGTTTTCGGTTTCTAGAATAATTGGATGGAATCATTATTTCATACTATTTTAGTAAGGCGAAAACATAACAAATTATAGCCAATGGAATATCTAGTCATGATGGCAAATACTCTCTTCATTTGATGTTTATGTATATCTCTTTGGTTATACAATGTTATATATATGTGTATATATGATGTTATATGTGTATATTGCCATTAATATATGATGATGATGTTTCTCGTATTCATTATATAGATATATATTTGAGTTTATGTTTTGGGTTTGTAGAATAAATGGATGGATTTATTTCCTACTATTGTTAGCAAGGCGAAAACATTACAAATTATAACCGATGGAGCATCTGGTTATCGCAATGGCTCTCTTCATTTGGTAAATTTCAAAGCTTAATTGGCTGAAAATTTCCAGCTTATTATTTTATGTAGTGTCTTCACTTACGATTTTTAACTTGTGAAGTTTTTTGCGGAGTTTCAAGTTCTTTCCCCATTGGTGCCAACACGTGAGGCGTGCTTTCTTAGATATTGTCAACACAACGTTGAGCAAGGAACTTGGTCCATTGTTGATTTTCCTATTGATGGACTTCATGATGGACTGGAAATGTCTTTGACTCGTTATAGGAGGCGGCCTTCCGGCTGTATCATTAAAGACATGACCAACGGTCATGCAATGGTAAGCGGTCTAATCTTTGGTTCCTATGAATTACTATTGGAATAGTTTACTTTTCTTTAAGGTCCATCTGCAAATTCTTGGATAAGGTATGTCTCAATTACAGTCTGCACTTTACATGCTTTACATTAACTCGTTTGATACATATGATATTACATGTATTATATATAATACAAGCCCATTTCACTCATAGAATTACTCGTTTTTCTAAAAATTTACTTCAGGTGACATGGGTGGAACATGCAGAATTACAAGGTAAAAGAGTAGCACATCATATTTTTGATACAATACTTAATAGTGGTGTTGCTTTTGGTGCAGCAAAATGGCTCTCCATTTTGCAAACCCAGTGTGAAAGACAAGCTAGTCTTATCATGGCCCGAAACATTCCTAATCCTGAAGGTAATGCACTCTTTCACTTACATAATATACTATCTAAAGTTAGATTTTACATCATTTCAGTTTTAACCTTTCAGTTGTTCCATCTGCTGAAGCGAGAAAGAAGTTGATGAAATTGTCGCAAAGAATGATAAGAATATTCTGCGCAAACATAAGTTGGACCAACAACCAGACATGGACTGCGCTGCCTGAAACATCCGATGATACAATTAGAGTAATGGCTAGAAAAACTACAGAACTTGCCCAGCCAAATGGAGTTATTCTTACTGCAGTATCTACAGTTTGTCTTCCCTTTTCACACAGTCGAGTGTTCGAGCTTTTATCCAATGAGCAAAAGCGAACTCAGGTGCATACTACTATTACCACCACCACCAACAACAACAACAACAACAACAGCTGCTGCTGCTGCTGCTATTCTCAAAAGATACTTGTTTTCTTCAGCTATTTTTTTTAAGAATAAAGTGGTATTTTATTCAAAAATTAGAGCCGTTTTTTTGATTTCTCGAGCATTCAAAACCTGACCTAAAATCTTAATAGAAAGTGTCATACCATTTGGCACTAACTAGTGGTCCTCAACTTTTTTTCAACTATTTTTAAAACGTGTTCTATGTTTCATTGCAGTTTGATGCGCTTTCTTACGGAAAATCGTTGCAGGAGGTGGCTCACATTGCAAATGGCTTGCATCAAAGGAATCGCATCTCTGTTCTGCGTGCAAATGTGAGTTCAATTTTTTTTTATTTCGTTACCATTGTCAATTGAGTGAATAATTAGCATCATAGTTATCATAACCGAACCATGATAATACTTAGTTAGAGGTTTTGATGGTTAGATTGCCCATGCCATGAGAACCTTTTCAGTGACTTCTATTTCTTAATGTAAAAAATGTTCGATTTGAGGAATTTTTTTGGCATAAAACAAACGTGGGAATCAAAATTTGAAACTGCACCATTAGTTTCACCTCGCTTCGGTCATCAGCAATGCCAAAAGACGTTTTAATAAATAATAACAGTTGTATTTTAGTTGAAAGCCAAAATGATTCAAGAAAACAATGTTCCGTGTCCCGCAAAATGGTGGAAGGCGGTTTACTTTTCACTACAAGGAATCTTCCTTCAGATTCAAGGGTCGCAGCCTTCCTTTGATCCTTCCCAGGGTTGCCAATTTGGGCAATTTGGTTGGGTTTTTTCCGTAGGAAATGACCAGTTTTTGTGTATTGAACCACGATCCTAATGGTTTAACCTTCTAATAACAACTCACCATTTCTATTATTTCCAGACTGCACCGGACCATGGTATGCGGTTTTCATGGCTGGACTGGCACCCAGTCTGTTCTTGATAACAGTGGTTTCCGAGCTTATATTAGGGAAATTGCAGGATAAGAGCATAATGAAATATGCTTGCTTTTAAGTTGGAAGTTATTTGCATGATGGTAAATTAAAAATAAGATTTTAGCTGGTACAAATTTTGGAACATAAAAATTCGATATTTGTAGGGCATAAGATGTATACTATCTAATTAGACAATGAAATCTGACTGCTAACTGTGATAGGTGCTGAAGATGAAATACACCATTTACTATGAACCATTCAAATAGATGGTTCAGTTAGTAATATTACATGTTTTTAAATGGATACAGCAATATTAACAAAATGGGGGAAATGCAGATGAGAGAATGAAAACTAAATTAGCTAATAGAAATATTATAGTGAATATATGACAGTATACAACAAGTAGATAGAGTGTATGTCTCTAGGCATAATTGTTGTATTGAATTTGCATGTGCATTCTTAATCATGGACTACATAAGTGACGTCAGAGTTAATTAGTTCAAATGAAAAACTTGAAACCGATTTTAGTCCGAAAGACACATCACTCAATGCTATATTAATATAGAATCTGATACAACAGAATGTTATATTAAACTATGATCGTATAAACGAAGTCCTAAATTAAACTAGCATCGGTATGTTTACAGCTAAAAAAATAACACACTAATGTATCATTACACATACATATTGCTAAGTTTATATAGACTATACTTATATACTGCTAAGTTCACATAACATTCGTTTTCATAGTTCGTATACATGTTTTATTCGATGTTATATGAATATAGTATCTAATGTATTTCAGACTAAATTTTAAACCTATGTTTTGCATTCAAAAATATAGCTGAAGCTTTTTCTTCTTCCTATTTCCAGTTAAGATATATATATTTCCATGAATTTATGCATGTATAGATGTACACAGGCAACAAGCAGTCACTCAGCCAAAGACAAGACAGAACTCCTGGTACTACAAGAAAGCAGTACACACCAGATAGGTGGCAGCATTGTAGTCTATGCCCCGATCGATGGGGACAAGTTTCAGATTGCAATGAATGGGGAAGACCAATCATCCCATAATAATGTTCCCCTCCTTCCTACCGGATTTGTAGTCCTACCAGCTCCTTGCCCCGTTAACAATTCTTCCACTACCGGATGTCTTCTCACAGTGGGAATACAAGTCCTCGCAGGCTCCGCTCTGTCTGCCGATGAGGTTAGCCTTTCCACCATCATATCACTGACTACTCAACTAAGCAGCACCATGCAGCAGATAACCAACGCGCTTGGTAGTAATGGACGGAGTTACTCAGCTCTGGTGGATAACCGGTGCGAGACTTCAGCTACTGTTCTGGATCATATGATCAGGGATCTAATGGTTCGTGACGGTGCACTGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010919976.1	1.5e-199	homeobox-leucine zipper protein ROC3
Swissprot	Q336P2.1	3.3e-172	Protein RICE OUTERMOST CELL-SPECIFIC 3
trEMBL	A0A6I9R3P1	1.1e-199	homeobox-leucine zipper protein ROC3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G46880.1	44.89	1e-162	570	HB-7;HDG5	homeobox-7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g319674	AT5G46880.1	724	329	19	77	754	109	808	44.89	1e-162	570
g319674	AT4G17710.1	697	313	16	68	752	75	703	43.62	8e-148	521
g319674	AT4G04890.1	758	423	21	19	752	7	735	37.20	6e-138	488

Ortholog group

Species	Genes
Allium cepa	g319674.t1; g342170.t1
Allium fistulosum	AfisC3G08258; AfisC5G03651; AfisC6G01335; AfisC7G02371
Allium sativum	Asa2G06801.1
Arabidopsis thaliana	AT5G46880.1
Oryza sativa	LOC_Os10g42490.1; LOC_Os10g42490.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	80	135	53.5	1.4e-14
PF01852.16	START	Domain	269	496	113.0	1.1e-32

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0045595	P	regulation of cell differentiation
GO:0045596	P	negative regulation of cell differentiation
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048497	P	maintenance of floral organ identity
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051093	P	negative regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090700
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network