result

Gene information

Detail information of g320305

Location

Gene	Chr	Start	End	Strand
g320305	Scaffold_66954:HRSCAF_450040	160920	164553	+

Sequences

CDS

Protein

Gene

>g320305.t1
ATGGCCATCGTCTTCTTTATATTAATCATAATCCTATTGCCTAATCCATCCACTGCTTCTGATTTTATTTCTCTTAACCAGTCAATTTCCGGAGATCAAAAACTGATATCAAAAAATGGAGATTTTGAGTTGGGCTTTTTCAGACCACGCAATTCTTCATATTACTACATCGGAATTTGGTACAGCCTCCAAAAAGTACCTGAACTTACATCTGTTTGGGTCGCAAACAGAGAAACACCAATATCGGATTTATCAAAAACGGAGCTTAAGATCTCAATGAGCGGCAACTTGGTCATTGCAAGCAGCTCAAATCCTTCAATTTGGTCTACAAAAGTTACGGGTATATCTTCTAACGCAACCACAGTTGCTATACTTTTAGATAGTGGAAACCTGGTTTTGAAAGATGGTTTAAACAATAATTTAACTTTATGGCAGAGTTTCGATCATCCTACTGATACTTGGTTAGCCGGTGCAAAACTTGGGTTAAATAAAGTAACAAAAGAGTCTCAGCGTTCGACATCATGGAAAAATCTAAACGATCCTTCAGCTGGTAGGTATAGTGTAACCACGGATCCACTTGATTCTGGCCAACTTGTCATACAATGGAATAATAAAAAAACTTATTGGTCTAGCGGTAACTGGAATGGTCGTATCTTTTCAGCTCCTGAGATGACAGCCAATGGCCTAGTTGATTTTGATTATGTGTCTAATGAAAATGAAGCTTACTTCGCATATTCAGTAAACCCCAATTATCCATTTATATTAAGGTGGATAATTGACATGTCAGGTCAAATGAGGCAAATGATTTGGATAGACGATGTTGCAGGATGGAGTATGTTTTGGTCTCGGCCTATAAATCAACTTGACGTTTATGCTTTTTGCGGACCTTTCGGTATCGGTAATGACAATGCTTTACCGTTCTGCAACTGTACAATTGGATTTGAACCAAAATCGCTTGATGAATGGCTTGAGAGTGATTACGCACAAGGCTGTAAGAGAAAGAGTCAGCTGCAATGTGGTTTTAATAGAAGCCATTTAGAAGTGGACGGGTATCTTCCCATGGATGACATTAGGTTACCTGATAACCCACTAAGGTTATACGTTGATGATATTTCAGATTGCAAGAACTATTGTTTGAGCAATTGCTCGTGCAGTGCTTACTACATGGTTGATAATTCAAGCTGCTCTTTTTGGATCGGAGACTTGCTTAATCTTGAAGATCAATATGCATCTGACATGTCAGGCAGTGGAAATTTCTTCCTCCGTCTTGCAGCATCAGAACTTCCTGATCCTAAGACAAATAAGTGTATATTTTCATATTACCTATAATAAAATGTTTTGGGTACAATAGTTTATGACATTGATACTCTCGGCTAACACAACTGTAACTCACAGCTAGGAAAGCAACAGTCATAATCAGGGTGAGCATTGCTGGTGGAGTGCTGCTATTAGCCTGTGTAGTTTGTTTTTTATGGAAAATGAAGAAAAGAATTAGAAGAATAAAAATAAAAAGTATGTACATCCTTGTGATATTTTCATGATTGAATGCAATGTAATATGAACAGACTCGTACATAATATATGATAATAACTATTACATTGTCAATGCAGTTACCTTAGAAGCAACTTCTGGGTCCAATGAACATCCAACTAATGGACCAAGAGAAGACAACATCGAACTTGCTTTGTTTGAAGTTAGCACCATTGTTACCGCTACAAATTACTTCTCTGCAGCTAACAAGCTTGGAGTAGGTGGATTTGGACCGGTGTACAAGGTAAATATTGTATATGTGTGTGTGTGTATGTATATACATATACATACATATACATATACATACATACATACATACATACATATCTATCTATATATATATATATGTATATATGTATATATGTATATATGTATATATGTATATATATATGTGTGTGTATATATATATATATATATATATATATATATATATATATTGCCGGAAAATGTGAAATCTTGTTCTTTAGGGAATTCTTGGACCCGATCAAGAGGTAGCTGTGAAAAGACTCTCGAAAGCATCAATGCAAGGAGTGGAGGAGTTCAAAAATGAGGTTACACTTATTGCTAAACTTCAGCATAGAAATCTTGTTCGGCTTCATGGTTGCTGCATTCATAGAGAAGAGAGGATGTTAATATATGAGTACATGCCAAACAAAAGTCTAGATGCTTTTCTTTTTGGTACGTCCAGGCATAAATCTAGCACCTGCACAGTACAAATGTCCATTCGTACAATATTTTGACTCAAACTAGACTTAACTATATGGCTTGATAAATATCTTGTATTCACATTGGATATATTTACAGTAACAATATTTACTTCTGCAAATATGTCACCGAACGCAAGCATATTTTTAAAAAATTGCTAGAGTATTCATCTACAGCTGGCCAACTTTTCAAGTGGTTCAAATAAGTGGGATAATATGAGATTATTTTGATCTCAGTTTGTAGTAGTTGCTCAATAATATGTGAAACATGTTACTAATTTTAATTTTGGAAAAAGAAATTGAAGCACATGAAGTAGACCACGTTTAGCATATAATATACAATTTTATCCATACCGTTTGAATATTAATTTTATCAAACCAATGACCACTAGTACAGTTTTAAAAACTCTAAATTGTTGATTGGGATATCAAATTTTATTGACATCATTAACCAAGGTTTGAAAAGTTAACAAAATCAAATGTTATCAAACCAATGACTACAACCTTTGTTTTTTTCCACAATTGTAGAGAAAAAAGGTCCATTGCTTGATTGGAAGACTCGATATCAAATCATTTTAGGGGTAACTCGTGGACTTCTCTATCTTCATCATGACTCCAGACTAAGAATCATCCATAGAGATCTCAAAGCCAGCAATATTCTTCTTGATAAAAATATGAATCCAAAAATATCCGACTTTGGACTGGCCAGAATTTTAACTGGAGATGAGACGACTGACTTTAACACAAGAAAAGTAGTCGGTACATAGTAAGTTCAGGTTTCACATGTATTTTATAAGATTAAGACATAGTTCACAAGTTCACCTTTTGATGCATTGGTGATAATTACAGTGGGTATATGTCTCCTGAATACGCTATGGAGGGTATTTTCTCTATGAAGTCAGACGTATTCAGCTTTGGGGTTTTATTGCTCGAAATTGTAAGCGGAAGAAAGAACAGAGGAAAATATGCCCACTCCACGCATCTGAACCTTGTAGCTCACGTAAGTAAGAGTTTTGCAGTCAGCTGATCAGCTGCGTTATATTTCAGGCAAAACTTGACACTTCATGGTGTTTCTATTTTGGTTGCAGGCATGGAGTTTATGGAATGAAGGGAAGAGCTTACATTTGGTCGATGAAACATTGAGTGATTCCTATTCTGAAGTGGAAGTGATGAAGTGTATAAAGGTAGGCCTATTGTGTGTGCAAGAACATGCTGCAGATAGGCCTTTAATATCATCTGTTATTGAATTTTTGGCAAACGCAAGTGACATTGCATCTATCCCAATGCCTAAACGTCCTGGCTTTATTTCAAGGACAATCCCCATTGAAACAGACTCAGTTTCGGATATTCATGAAGAATGTACTTCTAATGACATAACTGTGTCCTTGGAAGGAAGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_030930142.1	1.9e-205	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X1
Swissprot	O81905.1	2.3e-176	S-domain-1 (SD1) receptor kinase 8
trEMBL	A0A200Q4Y2	3.3e-204	Protein kinase domain

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G21380.1	44.50	1e-176	617	ARK3;RK3	receptor kinase 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g320305	AT4G21380.1	818	388	24	14	790	23	815	44.50	1e-176	617
g320305	AT1G65790.1	841	414	22	15	818	26	839	43.16	2e-175	613
g320305	AT1G11330.2	830	422	21	19	817	29	837	42.89	1e-174	610

Ortholog group

Species	Genes
Allium cepa	g320304.t1; g320305.t1
Allium fistulosum	AfisC1G05772; AfisC2G09354; AfisC2G09355; AfisC4G01489; AfisC8G03836; AfisC8G04049
Allium sativum	Asa5G01327.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g57480.1; LOC_Os07g36544.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	70	177	110.5	3.5e-32
PF00954.17	S_locus_glycop	Domain	209	318	84.5	6.3e-24
PF08276.8	PAN_2	Domain	348	404	47.2	1.5e-12
PF07714.14	Pkinase_Tyr	Domain	526	715	150.1	6e-44
PF11883.5	DUF3403	Family	777	818	34.5	1.5e-08

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network