result

Gene information

Detail information of g321129

Location

Gene	Chr	Start	End	Strand
g321129	Scaffold_67073:HRSCAF_450159	73621	75955	-

Sequences

CDS

Protein

Gene

>g321129.t1
ATGAACCTCAAATCTCCCATGTGTAAATGCGTTTCTCCTCCCACCAGGTGGGACTCGAACCTCGAACCTCACACTTGGGAGGCGTATCACCCCACCACTCGACCAAGCCCGCGGACAATTTTAAGTAAGCGTCGATTTGAAAGCATTTTTATGGTCTGTTCATTTGCTTTTTGAGGCAACTGATATCTGAAATTAATGTCAACAGGGAGAAGCACTGTTTCAAACCTATGAAAATTTAGAGCTCTTGGCAATGATGGAAAGAGTGTTAGGTCATATACCCCAGCATTTGTTGAGGAAAGCTGAGTAAGTGTCATGTCCATGATTGTGGTAGCATTGATTTTAATAAGCTTTTTAGTTCATTTTTCTAATTAGTGGGTTTGAAATATCGTCAGCCGACATGCTGAAAAATATTTTAGGAGGGGTCGTTTGAACTGGCCTGATGGTGCCTCTTCAAGAGATGGCATCAAAGCTGTTTCTAAATTGTCACGTCTTGAGGTACATACGTGTTATATATAAGCTCAAAAATATATGCAATGAAACATATTGGTTGCGGTTAAAGATACTATCCTTTTCTTATCATCTTTCTTTGCATGCAGAGTATTATACTACGGAATGTAGATCGTTCGACGGGTGATCTAATTGATCTTTTAGAGGGCTTACTGGATTATGAACCATCGAAGCGGTTGACAGCCCGTGAAGCACTCAAGCATCCATTCTTCACAAGGAGTAGTCGTTCAAGGTCTTAGCTTATGTTCTTGCTGCTAAATTGTGATTGGACAACAACATTGATGTTCTTTGTGCTTGATCAATCATCATTGGGTGCTTCTAGTGTGGTGATGTGCTGCTCGGAAGATGAGTAGGCCGTGCTTTTGAGATATCACTCGTATAGTAGATACATGATTTATCGTGCTTTTTATTTGATAACCAACCGTTGCACTATTTTACTTTAATGTTTGTACATTGTAATGAAAAATATATCACATTTCTTTCTGAGCATGCTCTTGTGTTATATTTGTTATAATGAGCTATTGAATAAATATTTTATAGCGGCAAAATGGTGTGTTATAAAAATTTCCAATTCCATTAAAATTTAGCTGTATTATAGCGGCTACAATGAGCTATTGAATAAATATTTTATAGCGGCAAAATGGTGTTATAAAGATTTCCAGTTCCGTTGAGATTTAGCTGTATTATAGGGCTATAATGAGCTATTGAATTAACGTACCATAGCGGCGAATTTGCGTTATAAAACTAAGCTCAACCATAGCGGCATATTTTGTGTTATAAATATTCAACAGTTTTTTATAACATGTCGATATACAGCGCTTATCAAACAACTATGGTTTTGATTAATAGCGGCTATATGCCGCTATAAAAGACACTTTTTGTTGTAGTGCATGAGTAAACAATGATTCATATTGGTTTTAACAGATTTTTATGATTCCTAATAACAGTTAAACTAATAATATATGTAGACAGGTGTGGCAGTAGTATTTTTTTTTCAAACGAAAGATTAACTGGCAGTTTGTGAAACATTAGATATAAATCGGATTTGCAATTGAACAAATAACGTTGGCATTTTCTTGCGTGATGTAAGGATGACATTAAGAGTTCAATTTGTTAAATATTGATCGACTTCATTTTTTTAAGTCATTTCTTAAACAAATTCGATACTGATAAAACCGACTTCATAAACACTTGTACATGCAAAACAGAAACAACAATCACATTTTTGTTCTTTTAAAACACTAAAAAAGTAAATGATTTACCGATGCCAAAAGGTCGGTACATAACCTTCTGAACGTCTTAAGAGACATCGGTAGAAAACGTGATAGAAATTTTATTTCGACAACTACTCTCGTGGTGTTGTACCGACGACATACCGTCGACATTCGTCGACGTTTTGCTGACACCATACCATCGATGCATTTTCGATGCCATCTCTATTATTTTTTAAATTATAAAAATTGGATTTTTCGAAGTCATGTCGAGGCTTTTGCTGAAACAACATTTGCAGATGGACAATTTCTACTGCTGTCGACGAAATGGTTATTTTAAGTGACTTTTTTTTTGAAACTAGGAAAACCTGGTCAATCACTATAGACATGCAATTTCTGAACAGTAAACCTAGGGAATAGATGGCCGGTCCGCTACAACCACTATTCAGGCTAGCCAGACTTTTCGGTTGGGTTGGTGTAGGAGGCGCGAAAATGAACCTCAAAACCTCCCATGTGTAAAGGCGTATCTCCTCCCACCAGGTGGGACTCGAACCTCGAACCTCACACTTGGGAGGCGTATCACTCGACCACCCGACCAAGCCCGTGGACAATTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3945399.1	2.4e-40	hypothetical protein CMV_028217
Swissprot	P51567.1	1.3e-38	Serine/threonine-protein kinase AFC2
trEMBL	A0A8J4QE63	1.8e-40	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24740.1	67.27	1e-40	162	AFC2;AME1;FC2	FUS3-complementing gene 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g321129	AT4G24740.1	110	36	0	52	161	316	425	67.27	1e-40	162
g321129	AT4G24740.2	110	36	0	52	161	213	322	67.27	2e-40	162
g321129	AT3G53570.4	112	35	1	52	162	335	446	67.86	1e-38	156

Ortholog group

Species	Genes
Allium cepa	g321129.t1; g321131.t1; g321132.t1
Allium fistulosum	AfisC3G02619; AfisC3G02879
Allium sativum	Asa2G02306.1; Asa2G07249.1; Asa3G02361.1; Asa4G00822.1; Asa6G03313.1; Asa7G07683.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006396	P	RNA processing
GO:0006397	P	mRNA processing
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0016070	P	RNA metabolic process
GO:0016071	P	mRNA metabolic process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0046483	P	heterocycle metabolic process
GO:0046777	P	protein autophosphorylation
GO:0071704	P	organic substance metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:1901360	P	organic cyclic compound metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08287	E2.7.12.1; dual-specificity kinase	EC:2.7.12.1	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network