result

Gene information

Detail information of g323338


Location
GeneChrStartEndStrand
g323338Scaffold_67369:HRSCAF_4504553296239229+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020261089.10.0e+00probable histidine kinase 3
SwissprotA1A696.10.0e+00OsCRL2
trEMBLA0A5P1F1I70.0e+00histidine kinase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G27320.165.380.01244AHK3;HK3histidine kinase 3

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag323338.t1
Allium fistulosumAfisC1G03878
Allium sativumAsa0G00226.1
Arabidopsis thalianaAT1G27320.1
Oryza sativaLOC_Os01g69920.1; LOC_Os01g69920.2; LOC_Os01g69920.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03924.10CHASEDomain120316130.27.4e-38
PF00512.22HisKADomain40446963.61.2e-17
PF02518.23HATPase_cDomain51667694.64.8e-27
PF00072.21Response_regDomain84397571.64.9e-20

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001101Presponse to acid chemical
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0016020Cmembrane
GO:0006952Pdefense response
GO:0042742Pdefense response to bacterium
GO:0003824Fcatalytic activity
GO:0004672Fprotein kinase activity
GO:0004673Fprotein histidine kinase activity
GO:0004888Ftransmembrane signaling receptor activity
GO:0007165Psignal transduction
GO:0005783Cendoplasmic reticulum
GO:0005488Fbinding
GO:0005623Ccell
GO:0005737Ccytoplasm
GO:0005789Cendoplasmic reticulum membrane
GO:0043231Cintracellular membrane-bounded organelle
GO:0006464Pcellular protein modification process
GO:0006468Pprotein phosphorylation
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0040007Pgrowth
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0009888Ptissue development
GO:0007568Paging
GO:0008150Pbiological_process
GO:0009266Presponse to temperature stimulus
GO:0009267Pcellular response to starvation
GO:0009409Presponse to cold
GO:0009414Presponse to water deprivation
GO:0009415Presponse to water
GO:0009605Presponse to external stimulus
GO:0009607Presponse to biotic stimulus
GO:0051707Presponse to other organism
GO:0009617Presponse to bacterium
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009735Presponse to cytokinin
GO:0009736Pcytokinin-activated signaling pathway
GO:0009737Presponse to abscisic acid
GO:0009743Presponse to carbohydrate
GO:0009744Presponse to sucrose
GO:0009755Phormone-mediated signaling pathway
GO:0009884Fcytokinin receptor activity
GO:0009894Pregulation of catabolic process
GO:0009909Pregulation of flower development
GO:0009987Pcellular process
GO:0009991Presponse to extracellular stimulus
GO:0010029Pregulation of seed germination
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010087Pphloem or xylem histogenesis
GO:0010150Pleaf senescence
GO:0010271Pregulation of chlorophyll catabolic process
GO:0010959Pregulation of metal ion transport
GO:0012505Cendomembrane system
GO:0016036Pcellular response to phosphate starvation
GO:0016301Fkinase activity
GO:0016310Pphosphorylation
GO:0016740Ftransferase activity
GO:0016772Ftransferase activity, transferring phosphorus-containing groups
GO:0016773Fphosphotransferase activity, alcohol group as acceptor
GO:0016775Fphosphotransferase activity, nitrogenous group as acceptor
GO:0019899Fenzyme binding
GO:0018106Ppeptidyl-histidine phosphorylation
GO:0018193Ppeptidyl-amino acid modification
GO:0018202Ppeptidyl-histidine modification
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0019900Fkinase binding
GO:0019901Fprotein kinase binding
GO:0033554Pcellular response to stress
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0031323Pregulation of cellular metabolic process
GO:0031329Pregulation of cellular catabolic process
GO:0031667Presponse to nutrient levels
GO:0031668Pcellular response to extracellular stimulus
GO:0031669Pcellular response to nutrient levels
GO:0031984Corganelle subcompartment
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032870Pcellular response to hormone stimulus
GO:0032879Pregulation of localization
GO:0033993Presponse to lipid
GO:0034285Presponse to disaccharide
GO:0034756Pregulation of iron ion transport
GO:0034757Pnegative regulation of iron ion transport
GO:0036211Pprotein modification process
GO:0038023Fsignaling receptor activity
GO:0042175Cnuclear outer membrane-endoplasmic reticulum membrane network
GO:0042221Presponse to chemical
GO:0042594Presponse to starvation
GO:0043170Pmacromolecule metabolic process
GO:0043207Presponse to external biotic stimulus
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043269Pregulation of ion transport
GO:0043271Pnegative regulation of ion transport
GO:0043412Pmacromolecule modification
GO:0043424Fprotein histidine kinase binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044425Cmembrane part
GO:0044432Cendoplasmic reticulum part
GO:0044444Ccytoplasmic part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0048366Pleaf development
GO:0048367Pshoot system development
GO:0048509Pregulation of meristem development
GO:0048519Pnegative regulation of biological process
GO:0048580Pregulation of post-embryonic development
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048831Pregulation of shoot system development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051049Pregulation of transport
GO:0051051Pnegative regulation of transport
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051193Pregulation of cofactor metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051704Pmulti-organism process
GO:0051716Pcellular response to stimulus
GO:0060089Fmolecular transducer activity
GO:0065007Pbiological regulation
GO:0070417Pcellular response to cold
GO:0071215Pcellular response to abscisic acid stimulus
GO:0071229Pcellular response to acid chemical
GO:0071310Pcellular response to organic substance
GO:0071322Pcellular response to carbohydrate stimulus
GO:0071324Pcellular response to disaccharide stimulus
GO:0071329Pcellular response to sucrose stimulus
GO:0071368Pcellular response to cytokinin stimulus
GO:0071396Pcellular response to lipid
GO:0071495Pcellular response to endogenous stimulus
GO:0071496Pcellular response to external stimulus
GO:0071704Porganic substance metabolic process
GO:0071944Ccell periphery
GO:0080117Psecondary growth
GO:0080190Plateral growth
GO:0090056Pregulation of chlorophyll metabolic process
GO:0097305Presponse to alcohol
GO:0097306Pcellular response to alcohol
GO:0098542Pdefense response to other organism
GO:0098827Cendoplasmic reticulum subcompartment
GO:0099402Pplant organ development
GO:1900140Pregulation of seedling development
GO:1901401Pregulation of tetrapyrrole metabolic process
GO:1901404Pregulation of tetrapyrrole catabolic process
GO:1901564Porganonitrogen compound metabolic process
GO:1901700Presponse to oxygen-containing compound
GO:1901701Pcellular response to oxygen-containing compound
GO:2000026Pregulation of multicellular organismal development
GO:2000241Pregulation of reproductive process
GO:0090693
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14489AHK2_3_4; arabidopsis histidine kinase 2/3/4 (cytokinin receptor)EC:2.7.13.3 Plant hormone signal transductionko04075

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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