result

Gene information

Detail information of g325401

Location

Gene	Chr	Start	End	Strand
g325401	CHR6	132658565	132664442	-

Sequences

CDS

>g325401.t1
ATGATGTCGGATTCCGTCCGTATGAGCAGCAGATTCCTCTCTAAAATGAAAACCAAGGGAAAAAAGAAAAGAAAAAAAGAAATGAAAGAGGAGGAGCAGTTATGCGACTACTGCAACAAAGCAAAGGCAATCCTGTACTGCAGAGCAGACACAGCAAAGCTATGCCTACCATGTGACATGCACGTGCACAAAGCAAACACAGTCTCCTCAAAGCATTCACGCTCTTTGCTCTGCAACTCATGCTACTCTTCTTCCTCTTCGATATTCTGCCCTACCCATACCGAAGTTTACTGCTCCAACTGCGATTATGAGGCTCACGTTAGCGTTAACCACCACGAGAGAAGGGCAGTTGAGTCATTTTGCGGCTGCCCAAGTGCTGTTGAGCTTATTTTGTTGCTAGGGTTTGGTGGAAATAAGAATATACTGAAGGAAGAGAACAAAGATGAGGTTTTTAACGACGAAAGTTTGTTGTTTTGGGACGCACCGCGTGTTGTTAGGCTGAATGATTTGATTGTACCAGTGGATGATGATGCTGTTCAGCATGAAATTCAGGCTTTTGATGTGCCTCCTTTGCCTAAGGATCGAAATCTAGCATGTGGAAAACAGAAAGAAGAGATAATGCAGCAACTGCGTGAACTACTGAATTCCGAAGGTGGGCAGCTGAGTTGTTATCTTGAGGAAGATGAACCTGTTACAGAATTTCAATCTCAACTGCCAGACAACAGTGATCAACAGGGCAATCTTTTCTTCGATTCTGATGGAAATGCTAATTTTACTGTTACACATGAACTTGAGGCTAGTGAGATTCAATGGAACAGCAATGACTGGCAAGAGGCAACAAATCCAGCAATATTTCCTTACGATCAGCAACTTGAAAATTACTCCGTGGAAACATCTTCTTATCAAGATAAGGTTGAAAATTTCCAGACAGACACTTACACGCCTAACGTCAGCAACGCTGATACCAACATGGTAAGTGACAGAGTACCTTCATTTGCATCGAAACTTGGACTAGAAATATTATGCCCAGATCGCAACTCCGTCCTCTCACGGTACAAGGAGAAGAGAAAGGCAAGAAGATATGATAAGTTAATAAGGTATGAATCCAGAAAAGCACGGGCTGATAGCAGAGTGAGAATCAAGGGCAGATTTGCTAAAGCTTAA

Protein

Gene

>g325401.t1
ATGATGTCGGATTCCGTCCGTATGAGCAGCAGATTCCTCTCTAAAATGAAGTTGAAGCTTGATTCACAATTTTGCAAACATTGGTTGACTTAGCTGAGTTGGACATGGGTATAAATCACGGAACCACAATCTTATGTAAAAATCCGCTTGTTGGCCGTAGTTGGTCTTTATTATGCAAATTTATTGCAAGCGCTGTGAGGGTGAACGTCACTGTTTACAAAAGTAAAGAGTGAAATGGACTAATCGTCGTGGACACAAAAATTAAGGACCCAAAGTACCATAGGCCAACTCACACTATTGAAGGTAACACCGCTTTGAAATATCTACAGTAAAACGATCCTTCTAGCACTCTGTCTTGATTCTCAAGCAACACCAACCAATTTATATCCTCACTTTCTTTTAAACAACTAAAAAAAATCACAAAGAACCAAGGGAAAAAAGAAAAGAAAAAAAGAAATGAAAGAGGAGGAGCAGTTATGCGACTACTGCAACAAAGCAAAGGCAATCCTGTACTGCAGAGCAGACACAGCAAAGCTATGCCTACCATGTGACATGCACGTGCACAAAGCAAACACAGTCTCCTCAAAGCATTCACGCTCTTTGCTCTGCAACTCATGCTACTCTTCTTCCTCTTCGATATTCTGCCCTACCCATACCGAAGTTTACTGCTCCAACTGCGATTATGAGGCTCACGTTAGCGTTAACCACCACGAGAGAAGGGCAGTTGAGTCATTTTGCGGCTGCCCAAGTGCTGTTGAGCTTATTTTGTTGCTAGGGTTTGGTGGAAATAAGAATATACTGAAGGAAGAGAACAAAGATGAGGTTTTTAACGACGAAAGTTTGTTGTTTTGGGACGCACCGCGTGTTGTTAGGCTGAATGATTTGATTGTACCAGTGGATGATGATGCTGTTCAGCATGAAATTCAGGCTTTTGATGTGCCTCCTTTGCCTAAGGTAGCGATCCTCTATTTTTATCAGATCTCTGGTTCTGATTCCGAATATTTCAGCTTTGAGTTGATAAATGCTTCCAAAGAGAGTACAGTGCTGCCACCAAACACTCTCTTGCTGGAATACGCATCCATTTATTGGTGGAAAAAATAAATAAATTAAGATGTAATTATTGATATACCAGTAAATCCAAACCTATTTCTACTAATAGAAAAGAGACCAACTCAAACATTTTTTAAAGGAAGTAGCTCGTATCAGTGAATACTTTCTATCCATTTTTTTTTAGGTTGGTCTTGTTGAATAGTTTAGTTGACAGGGGTTAAGAGTAGACTCATCCAAAAAATTAACATGTACACCTTATATTTTAGGATACTTTTTTATGGATATAGAGTTCAATAACGATGGTTGGGTAAATGATGTTTTTTGGAAACTTTAACTTTATAAACGCGTTTGTATGTAAAGTTAGAATGTTTATTTTATTAATTTAGTTAGTTGTTATGTTTTTATTTATTTAATTAATAATAATTCATTTTAATAATTAAATTAAGTAGTCAATAATAAAATCTATTAATAGTGATCAGTTTATTTAAATTTTAACATAAAATTGAAATACTAATATTATAATTGTTTTATGATATAATATTTTAATAAGGAATAGTCGCTACTTTAAATTTAATCACTAACCGTTAGTAGTTAATTCAATCAATCAGTTTAAATTTAATACTTAATAACTTATATCTAATAATTTAATAAATTAAATTTATCAAGTAAAAATAGATAATAGTCAACAGTTAATGATTTGGATTTAATAATTCATAGTTTATAATAATTAATAAATTGAATTTATTAAATAAGAAATAACTAACAAACAATAATAAATAATTTAATTTTAAAAATAATGACGTTTAATGTATAATTAGTAATTAATACTGTACAATCTATTATTTGTAATTAACAATTTAAAAATAAATCAGAATATTGTTTAGACAAGTTTTAATTTAATATACATATAATTAATATTAACTAATTAAATTAAATTTATAATTAAAAAAGTAAAATGCATTGACTTGTGCATCCCACTTGAGCAACTTAGTTGGATGTAAGGCATACACATCCGATTTAGCTCTCCATTTTGAATAGTTTAAACCCAAACGAACGATGATGTAAACTTTATTATAGTTTGGATGAAGGTTTTTCAATTCAATGAACCCGACATTTGATGTGTCCAATAACGAATTTTAAGTCAATGTACAAGTTTACGTGTTTTCAGTTACTTATGTGATCAATATTGGACTCTTATGTGATCAATATTGGACTCTGAACGTTTTTGTCCTTACTACTATAAAGCTTGGTATTATACCGGCATAGAGTAATCCTATGTGTTATCACTACTAATAGTTTCCACTGGTTAAAATAAAGATTTGTAGAAATTTTGTGAGATGTAGTCTACTCTATATTCTGATAAATCAACAAATTTACAATTACTTGTTATAAATATAAGCATGGTTCTAACTTATGATCTTTCATTGTTTAATTTTCATTTTGGTACAACCAATGGTGCATAAATCATTTAGTACACGAGTGGTAAATTTATGCAAAACAGGTTAACAAGTGTTAAAATAAATATTGGTGGAATCCAGGAGTGAACACTTTGAATTTCACAAATCAACTGACATATGTCGCCTAATCATGGGAACTTCATATGACTATAATCAAAAACAGAATGTGTGATAAGAAAGAGATAAAAGTTGCTTATCGTCAAATGTTGCACATTAGTTCGGTACAAATTAATTGAAATAAAATTTTGTTGAAAGTAACAAAATGAGAATACAATATCAACTGAGACTTGAACAAATTTGAAATTGTAAAAAATACTACAGTATCCATAAATAATTCTATTGCCAGGTATACATCTGTTAAAACATACTAACCTTTTGTGTTAGTATTTAAGAGAACTGGTTGTGTTAATAGAAGAACGGCCACAAAATCGACTTCCCTAATTACCTCATCTCCCAGTCAATATGTTTTGCTCAAAAAATTTCATTATAAAATGCGCTCTGTAAACAGTCTCACAATGAAAAATTTAATGATATAAGCTACTCTCAGATTGGAAATATAATGATATATGTATCTATAGAAAGGGTGCAATTTATGTACCTGCAATCTGTAATGTTTTATATATAATTGAACACTTGATTGGTTGATGTGGCATTTAAAGGTTATTTATACTTATTCATAGGTGCAAGTGCAGCAATGTTTGCCAAAATTTCTTGTTCCGCTTTACACATAAGACTTCATATATTAGCATTAGCATATGTTTAACAAAGATAATTGTTAATTTAGGATCGAAATCTAGCATGTGGAAAACAGAAAGAAGAGATAATGCAGCAACTGCGTGAACTACTGAATTCCGAAGGTGGGCAGCTGAGTTGTTATCTTGAGGAAGATGAACCTGTTACAGAATTTCAATCTCAACTGCCAGACAACAGTGATCAACAGGGCAATCTTTTCTTCGATTCTGATGGAAATGCTAATTTTACTGTTACACATGAACTTGAGGTTAGATTGTTTGTTTTGCTCTTCTTTTAACTGAATTTGTTTGCATATATTAAGGATGATCTGGTTTGTCAAATAGATTGAGATTGATCCTCTTTTCACCAGAACAGAACCCAAAATCTGCAATGATACATTTTAGTGGTAATCATTTTTCGCCCTTTAATGTAATGCACATGCTAAGTGGTTGTCTGAGTATTATAATGTTGAGAATGGTCCTGAATTGATAAAGATAAACCAAACTGAATCATCTACTCTGGTTAACACTGGGAAGAAGTCAACAAACCATTTTGAACTATATAATATCAAATTATTCTGTTCAGATCATGGTACTACATAGTACAATGCTATGGTAGAAAATACAATACTATGAACAGTGCAATTCAATTCTGAACTGTTCAAATGGTTGGGTGTACTAAAAGAACGACTAGTTATCACAAAATCAATTGGTAACGAACAGTGACCTCCTAGTATATATGGAGGGCCAGTTGTATTACATAGAGGAACTGAGACAATTCTCAACAAGGTGAACCCATCCTACAATCCATACCGAGATGATCATATTACGTAGAGATGCCATATACTACATAGTATGAGCAATTGAAAGTACATTTCTGTAACTTGATGATGGTTGTACTATTCCATAACGGTTAAGTATGCAAGTGTAATTGTGGCAATCAGCGATGAAACCAGGATTTTTGTTTGCGTTGGGTAGAGTTGTATAGCTAGTCAAATGTATAACAGAAAAATTGAAATTCAACTGAAGTGCTCTAGTGTTGTACATTTTGAGATACATTAAAACAGTAAAGTTTGACCATTCGCATAATGTCGATAATTTTATAATTTACACACAAAATACATAATCCAAAATACATAAGCTACTAAATAATCTATTTAAGCCGTGCTCGATGAACTTCACGAAAATCAAACTCATCTACAATCGCTTCAACTTCAATACTTTAGCGATCTCTCTTTCAATATATATCATCATGTGATTTCCAAGTAGATCATCCTCCATCTTATTACGAAGTGGTATCTTAATCAACTTCACTGTTGAAAATGCTCATTCTGTGATTGCAGTAGATACGGGAAGAGTTAACACTAGACAAATCAATCTGTGAACAAGAGGGTATCTTTCAGCTTTTTTGTTTAACTAACTCCTTATTCAACTCTCAGAGTGTTGAAATATTATGAAAGCGAGGATTAACTTGCTCATCTTGCTCATAATGTAGCAATTGGTGTTTCAGTTGAAAATCAATTTCCAACTTGCTAAAATCTCTAGGATGCTATTGTTCAGCTATCAAATAGGCATCATCAACTTTTAGAGCTGCAAAATTATTTTTTGTTCCAAATCTGAACTAAGAATTAAAAATCCAATTGTAGTGTCTGAAAATCTTGTAGATAACTCCATTAGACGATCTTCAAGTAATTCAAGTAATTTAACAATAAAGGAGACAATCTTCAAGTAATTCAAGTAACTTAAACAGAAAAAGAGGCCATCTTTGTATAATTTAATCCAACAAATCAGTTAGACAACGAATCAGCGGATTAAAATGAGGCAATAATTGACAAGATCAAAAGGATAATTACCTGCAGCATCTTAGAACAAATAGAAAATTTTGATTCAATTAGGTATGAAAGTTGAATTGAAGAACATCAACATTGACGACATGGAATTAAGGGTCACGGCTTGCGACTCTGATTCGCCATTTTGAACACGTTTTTAGTTTTCTACGGTTGCAGCCGAGGAGATATGCGTGTTTTTCTTCTCTGTAATTTTTTTGTTTTCTACGGAAATCTTGGGTTGGGCACCTGCCCATCCCATCCTTACTTTGGACTCGTCACTGGTGGCAATAACTATTAAGCATATTTACTATTCTACAATGTATCATGTTTTTCCTTTTCTATACAGGCTAGTGAGATTCAATGGAACAGCAATGACTGGCAAGAGGCAACAAATCCAGCAATATTTCCTTACGATCAGCAACTTGAAAATTACTCCGTGGAAACATCTTCTTATCAAGATAAGGTTGAAAATTTCCAGACAGACACTTACACGCCTAACGTCAGCAACGCTGATACCAACATGGTAAGTGACAGAGTACCTTCATTTGCATCGAAACTTGGACTAGAAATATTATGCCCAGATCGCAACTCCGTCCTCTCACGGTACAAGGAGAAGAGAAAGGCAAGAAGGTAGTAATAATACATACCGTAACTAAGAAACAAATAGAGCAATTTTGGTCCAATTGTTAACTTTTCTTTTTGTGTATGCATGTCTTGATTGAACAGATATGATAAGTTAATAAGGTATGAATCCAGAAAAGCACGGGCTGATAGCAGAGTGAGAATCAAGGGCAGATTTGCTAAAGCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275076.1	8.1e-74	zinc finger protein CONSTANS-LIKE 13-like
Swissprot	O82256.1	6.1e-42	Zinc finger protein CONSTANS-LIKE 13
trEMBL	A0A5P1EC88	1.3e-70	ABC transmembrane type-1 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G47890.1	41.85	4e-63	238		B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g325401	AT2G47890.1	368	166	11	26	387	4	329	41.85	4e-63	238
g325401	AT2G47890.2	216	103	4	26	240	4	204	44.91	2e-44	176
g325401	AT2G33500.2	424	189	10	35	387	12	398	29.95	6e-44	175

Ortholog group

Species	Genes
Allium cepa	g325401.t1
Allium fistulosum	AfisC6G03514
Allium sativum	Asa8G03469.1
Arabidopsis thaliana	AT2G47890.1; AT2G47890.2
Oryza sativa	LOC_Os03g22770.1; LOC_Os03g22770.2; LOC_Os07g47140.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	31	74	24.2	2.5e-05
PF06203.11	CCT	Motif	345	387	54.8	6.5e-15

Gene Ontology

Accession	Ontology	Name
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network