result

Gene information

Detail information of g325857

Location

Gene	Chr	Start	End	Strand
g325857	Scaffold_67689:HRSCAF_450775	397639	402253	-

Sequences

CDS

>g325857.t1
ATGGAAAGGGATTTCATGGGAATTCACGGAAAAGATTCAGAGGAAAGCGCAAACCGTGATAAAAAGGATTTGGCTGTCACAGGAGCTTCCACTCTGCAATGGCCATTTTCAAATAAAATCACTTCACTTCAGAATCTTATGTCGTTTAAGACTTCACAAGATGAGAGGCCAAGAAAATCTACAACTGACCATTATTGCTCATTGGGGTTTCAGCCTATAGCCACTAAAAATAATTCTGAATCATTCTACCAATTATCGAAGAGAAGTACTGCTCTCGATAAGCCAAATGCTCATCAATTCTCTTTATATGATCATCGGACTCAAATCACAGATGAACATGCGCCAACGAACTGTCCTTCTTCTGAGGTTCCTGGTTCTTCTAATGTTATGGGTACGGATACAAGAGCTTTAGTTCCAAGAACTTTTCTGAAGCCTATTACCTCATCACAGCTAACAATCTTCTATGCGGGTTCAGTTTGTGTGTTTGATAACGTCCCACTAGAGAAGGTGCAAGAAATAATGTCAATGGCGAGCAAAGCATCCAATGTGACATCAAACGATCTGAAACAGAGACCTGAAACCGCAATCCCTAAAGTATCAGTGACTAATTGTTTTGATGAAGTCAAAAACACGACTCAAAGTCATAGATACAACTGCAGTATTGTTCCTAGCCCAATAACTATTACTTCTCATTTAGGAGTACAGTCGAGTAGCCCCACTACCAATGAAGTTACAAAGAATGCAAGGAAAGTTAAATCACCACTTTCCACCCTACCATCGAGTACTTCAAATGCGTCTGCTCCTATTATTCAAAGAGGTGTACCAATGGCTAGAAAGGCATCACTTGCTCGGTTCCTGGAAAAACGAAAAGAAAGAGTAACCAATGTTGTTGTGCCTTATCCTTGCCCTAAAAAGTCACCTGATAATAACATATTAAGCAAATGCTCGTCGGAAGATCTTGCCATTTCAAGCAATACTCATGAGGAAAGTTGGTGTTCAATTGAGCCCAAGAAAAACAACAATACAGATATCAAAGATTCTCCAAGTACCGTACTAGAGATGTAA

Protein

Gene

>g325857.t1
ATGGAAAGGGATTTCATGGGAATTCACGGAAAAGATTCAGAGGAAAGCGCAAACCGTGATAAAAAGGATTTGGGTATGAATTTTACTCTTTTATAAATGATGTATCTTTTGAATTTGTTGATTTATTTCGGTTGGATATTTGAGATTAAGGATTGTTTTTGTGGAATTTTTTGTAATTTAATACAATAGCAGACCAGTGAGGTTGATTATGGATAAGTGGTATCTTTTAAGCGTTGGTAATTCTTAAGGTATGAAATGAACCTGTTGTACATATTTCAGTTGGTTTATAAGTCAAAATCCACGATTCTACCTAATCTTCTTCTTCTTCCTCCTTTTTTTCTTATATATATGTGTTTTTTTTAATTTTATTTTTATGTATACTTTCATGTAGATGCTATTTTAAAAGTAGTTAATAATTGCTGTTTCCGTAATTATGTACCTAAACTATGTTAGTAATATTTAGTTGTATATCTACTAAATTTAGAGATTTAATCACTCTTGAATACATCAGTAAATCTGAGCTAATTTCTTTTAAAAAATATTTCTATCATAGAAATTGATGCTTTAGGTATTTCTAATGATTATGTCCTTGGTGCAAATAAGCTACTAAAAGTCATTATTAAGTTTGGATATTCACTATAAATCAGTGACACCAGTTTAAGCAACGTTTCAAAATTCACTGCCGTTCCTCTCAAAAAATAAAGTTTCACGTGTCATCCCGTCAAAATTTTCAGCGGAAATACGCAGTTTAAACCGCATATATTTGTAGTCTGGTACACTGAAGATATTTGTAGTTTTAACAACATATTTTTGTAAAATAAAAAATTGGTAGTACACACTGCAAATTTTCATTTTATAAAAATATGCAATTACAAATAATTATATTTTAAACTGCAAACATTGCAGTTCTAACTGCGAATATATGCTGTTTAGAATCCATATTTTGCTGAAAATTTCGACTGAGTATTTTCATGAAACTTGTTTTGAGAAGAGTTTTTCAGCTATCAAGTTTAAAAATATGGGACTGATCCTAGTTTTCATTATTTTTCTAAAATAGAATATGCAAAGTAACTTGCATTTTTTTTATGTAAAATGCACGGTCAATTTGCATTTTTCGTCAAAAATTAAAAACATTAATTTATTATTTGTATGCAAGTATAATTGTTAGTTAGGTATATTTTTATTATATAACGACACTTTTTCACAATTACCAATTTTTATGGAATTTTCAATTTTTTTCCCAGAGTGTGTATGTCAACTTGCTTTTTCTATTAAAAAAAAGGCAAATTACCTTACAATTTATCTTCTGCAAAGAAGGAAAAACAGAAAAAAGAAAAAAAGAAATTACATATTCATTGATTTACAACACAAAAAGCAGGATTTTGTAACTTTTTACCACTTTGTTAATAAACCTTGTGTTGAGTTTTATACCTGGGACTCGGTTATGTAACGCAGATGTAACCAAATACCATTTGGGGTCTAGGTATATCAGTAGTTTAGCAAGAGTAAATCCATGCGTTTCATGTACCTCAAAGAAAAAACGAAATAGATTTTTTTTTTCCCCTCCTTTTGTATTCAACCTTTTCTTTTCCAGCTACAATTTATGTTGTAAATACATTGGTTTGCAAATACTCAGCTGTCACAGGAGCTTCCACTCTGCAATGGCCATTTTCAAATAAAATCACTTCACTTCAGAATCTTATGTCGTTTAAGACTTCACAAGATGAGAGGCCAAGAAAATCTACAACTGACCATTATTGCTCATTGGGGTTTCAGCCTATAGCCACTAAAAATAATTCTGAATCATTCTACCAATTATCGAAGGTTCTACCAACTAAACATTCTGAATCAGTGATAATAATGCTTAATTTTTGGTACTGTACTTTAATATGTTTACTACTGACATTTTAGAGAAGTACTGCTCTCGATAAGCCAAATGCTCATCAATTCTCTTTATATGATCATCGGACTCAAATCACAGATGAACATGCGCCAACGAACTGTCCTTCTTCTGAGGTTCCTGGTTCTTCTAATGTTATGGGTACGGATACAAGAGCTTTAGTTCCAAGGTGAAACTTATTTCTTATTAGAACTATGAGCAAATGATACGTTCAAGTAAATGCAGTAGTGTACTCCACCCATAATGAACTACCATAAACTACATGACCTTATTTTTAAATGTTTTTATGTAGTATAATTTGTTATTATATATATATATATATATATATATATATATATATATATCATTTTATGAATGTATCATGCATTGTGTTTACCGAAGTATGATATGAATCTGCTGGGAACACTGCTCTTTAGTAGCTAACAAACATCTTTTTTTGTTACGTAGTCTCCATGTATGTTATTAACTCATATGCTCTCTCTATACATTATTCTGATTCTGTTTGTGTAATTAAATCTAGAACTTTTCTGAAGCCTATTACCTCATCACAGCTAACAATCTTCTATGCGGGTTCAGTTTGTGTGTTTGATAACGTCCCACTAGAGAAGGTATTAAAGATGCGACCATATATACAAATAAGCTTAGCATTTTGAAATGATAATGTGGCCGATCTTTTCTTTTGTTCTATAGGTGCAAGAAATAATGTCAATGGCGAGCAAAGCATCCAATGTGACATCAAACGATCTGAAACAGAGACCTGAAACCGCAATCCCTAAAGTATCAGTGACTAATTGTTTTGATGAAGTCAAAAACACGACTCAAAGTCATAGATACAACTGCAGTATTGTTCCTAGCCCAATAACTATTACTTCTCATTTAGGAGTACAGTCGAGTAGCCCCACTACCAATGAAGTTACAAAGAATGCAAGGAAAGTTAAATCACCACTTTCCACCCTACCATCGAGTACTTCAAATGCGTCTGCTCCTATTATTCAAAGAGGTGAGTTATTGCTGGTTTACTTTTTTAGAAGCATTTTAGTACTTAGGAAGCAGAACCTTCTATGAGTCCAACATTTCTCATCTACAACCGAGCTTCAGCAGTTCTTGCTTGGAACTTGGCAAGAGTAGACGTGAACATGTTTTTCTTTGGATTGTTCATTTCAAATGACATGTTTAGAAGATGATCTTTTGCAATGGAAAGTCAAAAGGTTTTTTGCTTTGTTTGTTTATTTATTTATTTTATTTTTTGTTCAAAAGTGAAGTTGGAAGAGATAGAATCATCATATTGTTTTGCTTCTGAAAGATTTTATATTTTATTTTTGTAAGTTGTTTTCAAGTAATTCTGGTTTTTAATTTAGTAAAATATGTATATTGAAATGAGTATAATATTATCGAATTTTATATTTAAGCAACCACACTATTTAAAATATCAATGACCCATTTCTCTGATAAAATATGTTTGCTACTTGTTTCCTATTTTGTAAAAATGATTTCAGTTTCCCATTCATGGCATTGGGCTTCTAAGGTTGAGTATTGCACCGTCAAGGGAAGTGGCCATTAACCAAATCAGTCTGCTAGCAAATAAAGAAAAAGACTATAGTTCATATTATCACTTGGTAACTTATGTTGAGGGTTTACACAGCACTATCTATTTAAATTTAAATCAAGCAAATTTACTTTTCTCTTTAAGGCTTTGATGTGCATCTAAGTTGTGCAGATGATGTGTTATCTGTAATAAAGAACTGTTCACTTATTCAGGTGTACCAATGGCTAGAAAGGCATCACTTGCTCGGTTCCTGGAAAAACGAAAAGAAAGGTACAACCTCTCAATGAACAAGTCTAGTTAGACATAACTAAATTGTTAAATAAATTAGTAAAAAAAAACCAATTTACCCCATCTGATTGAATTTACAATACTATTCCCATGTACCTTGGGTAGGAAATGTAGTTAATCAAACCTTTTGTGCAGTATGGGCATATTTTAACATCAATTATTTCATATGTATACAAAATGGTAGGGAAATATTTCAATTGTGGAGGAGTAGTGAGAATTTTCTTCTCACTTATTGTATATATATTTCATAATAAGTCAATAGTTCCCCTTTCATTTTCGCCAACCAAACAAGAAAACTTTGTAGATTTATTCCTTTGAAGAAAGGAACTAAATGACATGTGATGCTACTTTTCTTTGCTTCCTTTTCGAATTTCTTTGGAAGCAAGTTCAACCAATTAAATTTTATGGTTAAGCGATCTAGTTGATTGCTGACAGCGATAACAGGAAGGTTTGTCTGAGACTCTGAAATGCTAAGCATCTCTCACCATGACTTTCATTTTCACTCAGATAAGGCACAACTATTCTCCACTGATTTCAAAACAACCACCTCCAGTAAATTGTACCAATCGCAAACAAATTGCAACAAATATGGAACTATGTCATGACTAAAAGGGCTCATTAGAACACGTATATGAAATAAATATACTTTGCTTATGATGGTTAATTGGTTTTTTTCCATATTTATTTACAGAGTAACCAATGTTGTTGTGCCTTATCCTTGCCCTAAAAAGTCACCTGATAATAACATATTAAGCAAATGCTCGTCGGAAGATCTTGCCATTTCAAGCAATACTCATGAGGAAAGTTGGTGTTCAATTGAGCCCAAGAAAAACAACAATACAGATATCAAAGATTCTCCAAGTACCGTACTAGAGATGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020269420.1	2.1e-60	protein TIFY 6a-like
Swissprot	Q9LVI4.1	5.1e-19	Protein JASMONATE INSENSITIVE 3
trEMBL	A0A5P1EJR9	1.5e-60	Protein TIFY

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G17860.1	29.81	3e-21	99.8	JAI3;JAZ3;TIFY6B	jasmonate-zim-domain protein 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g325857	AT3G17860.1	359	172	15	1	306	1	332	29.81	3e-21	99.8
g325857	AT1G48500.1	328	194	10	1	317	1	302	29.57	5e-18	89.0
g325857	AT3G17860.3	320	158	12	32	306	1	299	30.00	2e-17	87.0

Ortholog group

Species	Genes
Allium cepa	g325857.t1
Allium fistulosum	AfisC4G00475
Allium sativum	Asa4G00559.1; Asa4G00560.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06200.11	tify	Domain	148	178	62.1	1.9e-17
PF09425.7	CCT_2	Motif	275	300	48.5	5.3e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0003674	F	molecular_function
GO:0003712	F	transcription cofactor activity
GO:0003714	F	transcription corepressor activity
GO:0007165	P	signal transduction
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006950	P	response to stress
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009611	P	response to wounding
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009753	P	response to jasmonic acid
GO:0009755	P	hormone-mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009966	P	regulation of signal transduction
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010646	P	regulation of cell communication
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0023051	P	regulation of signaling
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0031347	P	regulation of defense response
GO:0032870	P	cellular response to hormone stimulus
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048583	P	regulation of response to stimulus
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:0071395	P	cellular response to jasmonic acid stimulus
GO:0071495	P	cellular response to endogenous stimulus
GO:0080090	P	regulation of primary metabolic process
GO:0080134	P	regulation of response to stress
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13464	JAZ; jasmonate ZIM domain-containing protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network