result

Gene information

Detail information of g326800

Location

Gene	Chr	Start	End	Strand
g326800	Scaffold_67833:HRSCAF_450919	32506	33879	-

Sequences

CDS

>g326800.t1
ATGCTACACAGCCTACCTCCTCCTCAATCCAATGCACACATCATGAGGCCCAACAAAAGAAAGAAGCAAGACAGTGCTAGTGCATCCTCTTCTGCTTCCATTCCGGAAGAAGGACCGGGCCATGGGCTCGAAGCCCAAGGACTAGGCCTGCTAGGGCTTCTTCTCCAGTGCGCAGAAGCCGTATCCATGGATCACCTACCTCAAGCACGCGATCTTCTCCTCGAAATCACAGAACTGTCTTCTCCGTTCGGATCTTCGCCGGAGCGCGTAGCCGCATACTTCGCCGACGCTCTCAACGCACGGATCTTCACTTCTTACTTAGCTTCGTACTCTCCTCTAACCCTAAAGAAATTCACCGTATCCCAAAATTTGAAGATTTCACAAGCGTTTCAAATCCTCAATTCGGTTTCTCCCCTAATCAAATTCTCGCACTTCACCGCGAATCAAGCGATATATCAAGCTTTGGAAGGGTTGGGAAGCGAGGACGGAGTGCACATAATCGATTTCGACATAATGCAGGGGCTCCAATGGCCTGGGTTGTTTCATATACTCGCGTCAAGGGCCGTGAAGCTTAGGTCGATTAGGGTTACAGGAATGGGTTCTTCGATTGAGCTTCTGGAAGCTACTGGAAGAAGGCTTTGTGAATTTGCGGCGGCGGTGGGTTTGCCGTTCGAGTTTTGTCCGCTGGAGGGTAAAGTCGGAAATATCACCGATGCGTCCGTGCTGTTTCCACGCGACTGTAGAGAAGTTACAGTGGTGCATTGGATGCAGCATTGCCTTTATGATGTTACCGGGTCGGATTTAGGGACATTGGAGATGATCAAGTTGATAAGGCCGAAACTTGTTATGGTTGTGGAGCAGGACTTGAGCCATGCTGGTGATTTTCTTGCAAGGTTCGTTGAAGCATTGCATCACTATTCGGCGTTGTTCGATGCGTTAGGAGACGGTCTACATGAAGAAAGTTTGGAGAGGCACACGGTGGAGCGACAAGTGTTTGGGGCAGAGATACGAAATATCGTGGCGGTTGGAGGACCGAAAAGGACGGGAGAAGTGAAGGTGGAGAAATGGGGGGAGGAGATGAGGAAAGTTGGGTTGGAGAGAGTGAGTTTGGAAGGGAGTCCGGCTGCGCAGGCGAATTTGCTGTTGGGTATGTTTCCATGGAAAGGTTACACGCTGGTTGAAGAAAATGGATGTTTGAAGTTGGGATGGAAGGATTTGCCGCTGCTGACTGCATCTGCGTGGCAATTTGAAGGCGGTTGTGACGGTGGTGTCACCAATGATTTTAATGTTCGATAA

Protein

Gene

>g326800.t1
ATGCTACACAGCCTACCTCCTCCTCAATCCAATGCACACATCATGAGGCCCAACAAAAGAAAGAAGCAAGACAGTGCTAGTGCATCCTCTTCTGCTTCCATTCCGGAAGAAGGACCGGGCCATGGGCTCGAAGCCCAAGGACTAGGCCTGCTAGGGCTTCTTCTCCAGTGCGCAGAAGCCGTATCCATGGATCACCTACCTCAAGCACGCGATCTTCTCCTCGAAATCACAGAACTGTCTTCTCCGTTCGGATCTTCGCCGGAGCGCGTAGCCGCATACTTCGCCGACGCTCTCAACGCACGGATCTTCACTTCTTACTTAGCTTCGTACTCTCCTCTAACCCTAAAGAAATTCACCGTATCCCAAAATTTGAAGATTTCACAAGCGTTTCAAATCCTCAATTCGGTTTCTCCCCTAATCAAATTCTCGCACTTCACCGCGAATCAAGCGATATATCAAGCTTTGGAAGGGTTGGGAAGCGAGGACGGAGTGCACATAATCGATTTCGACATAATGCAGGGGCTCCAATGGCCTGGGTTGTTTCATATACTCGCGTCAAGGGCCGTGAAGCTTAGGTCGATTAGGGTTACAGGAATGGGTTCTTCGATTGAGCTTCTGGAAGCTACTGGAAGAAGGCTTTGTGAATTTGCGGCGGCGGTGGGTTTGCCGTTCGAGTTTTGTCCGCTGGAGGGTAAAGTCGGAAATATCACCGATGCGTCCGTGCTGTTTCCACGCGACTGTAGAGAAGTTACAGTGGTGCATTGGATGCAGCATTGCCTTTATGATGTTACCGGGTCGGATTTAGGGACATTGGAGATGATCAAGTTGATAAGGCCGAAACTTGTTATGGTTGTGGAGCAGGACTTGAGCCATGCTGGTGATTTTCTTGCAAGGTAGGTCCAATAAATTGATTTTTTTTTGTTCAAATTAAAATTTTACGAACAGTTCTTGATTTATCTGTTACATTACAGGTTCGTTGAAGCATTGCATCACTATTCGGCGTTGTTCGATGCGTTAGGAGACGGTCTACATGAAGAAAGTTTGGAGAGGCACACGGTGGAGCGACAAGTGTTTGGGGCAGAGATACGAAATATCGTGGCGGTTGGAGGACCGAAAAGGACGGGAGAAGTGAAGGTGGAGAAATGGGGGGAGGAGATGAGGAAAGTTGGGTTGGAGAGAGTGAGTTTGGAAGGGAGTCCGGCTGCGCAGGCGAATTTGCTGTTGGGTATGTTTCCATGGAAAGGTTACACGCTGGTTGAAGAAAATGGATGTTTGAAGTTGGGATGGAAGGATTTGCCGCTGCTGACTGCATCTGCGTGGCAATTTGAAGGCGGTTGTGACGGTGGTGTCACCAATGATTTTAATGTTCGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010936712.1	2.4e-159	scarecrow-like protein 23
Swissprot	Q9M384.1	1.4e-124	Protein SHOOT GRAVITROPISM 1
trEMBL	A0A8K0IDS2	7.0e-161	Scarecrow-like protein 23

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G41920.1	62.56	1e-133	473		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g326800	AT5G41920.1	406	136	7	18	415	3	400	62.56	1e-133	473
g326800	AT3G54220.1	359	135	3	56	414	296	649	61.00	4e-125	444
g326800	AT3G03450.1	381	227	10	47	416	177	546	34.65	2e-48	190

Ortholog group

Species	Genes
Allium cepa	g326800.t1; g326801.t1
Allium fistulosum	AfisC3G00294; AfisC4G01423
Allium sativum	Asa2G00443.1
Arabidopsis thaliana	AT5G41920.1
Oryza sativa	LOC_Os07g38030.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	52	415	349.5	1.8e-104

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001708	P	cell fate specification
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045165	P	cell fate commitment
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090610	P	bundle sheath cell fate specification
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network