result

Gene information

Detail information of g327275

Location

Gene	Chr	Start	End	Strand
g327275	Scaffold_67873:HRSCAF_450959	126959	127423	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247177.1	1.5e-42	lysine-specific demethylase JMJ703 isoform X2
Swissprot	Q53WJ1.1	5.1e-32	Protein JUMONJI 703
trEMBL	A0A8B7MTB0	8.3e-40	lysine-specific demethylase JMJ18-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G08620.1	65.06	2e-21	97.8	PKDM7D	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
g327275	AT1G08620.2	83	29	70	152	112	194	65.06	2e-21	97.8
g327275	AT1G08620.1	83	29	70	152	112	194	65.06	2e-21	97.8
g327275	AT4G20400.1	66	30	87	152	39	104	54.55	2e-19	91.7

Ortholog group

Species	Genes
Allium cepa	g327275.t1; g469050.t1
Allium fistulosum
Allium sativum	Asa6G02613.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02375.14	JmjN	Family	106	138	56.3	2e-15

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0051276	P	chromosome organization
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0008152	P	metabolic process
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003824	F	catalytic activity
GO:0005488	F	binding
GO:0046872	F	metal ion binding
GO:0005506	F	iron ion binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006259	P	DNA metabolic process
GO:0016570	P	histone modification
GO:0006325	P	chromatin organization
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006464	P	cellular protein modification process
GO:0006479	P	protein methylation
GO:0006482	P	protein demethylation
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006996	P	organelle organization
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0008168	F	methyltransferase activity
GO:0008198	F	ferrous iron binding
GO:0008213	P	protein alkylation
GO:0008214	P	protein dealkylation
GO:0008276	F	protein methyltransferase activity
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009648	P	photoperiodism
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009909	P	regulation of flower development
GO:0009910	P	negative regulation of flower development
GO:0009987	P	cellular process
GO:0010216	P	maintenance of DNA methylation
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0016043	P	cellular component organization
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016569	P	covalent chromatin modification
GO:0016571	P	histone methylation
GO:0016577	P	histone demethylation
GO:0016740	F	transferase activity
GO:0016741	F	transferase activity, transferring one-carbon groups
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0032259	P	methylation
GO:0032451	F	demethylase activity
GO:0032452	F	histone demethylase activity
GO:0032453	F	histone demethylase activity (H3-K4 specific)
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034720	P	histone H3-K4 demethylation
GO:0036211	P	protein modification process
GO:0040008	P	regulation of growth
GO:0040009	P	regulation of growth rate
GO:0040010	P	positive regulation of growth rate
GO:0040029	P	regulation of gene expression, epigenetic
GO:0042054	F	histone methyltransferase activity
GO:0043167	F	ion binding
GO:0043169	F	cation binding
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0043414	P	macromolecule methylation
GO:0043565	F	sequence-specific DNA binding
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045814	P	negative regulation of gene expression, epigenetic
GO:0045927	P	positive regulation of growth
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0046483	P	heterocycle metabolic process
GO:0046914	F	transition metal ion binding
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048573	P	photoperiodism, flowering
GO:0048579	P	negative regulation of long-day photoperiodism, flowering
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0048586	P	regulation of long-day photoperiodism, flowering
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051093	P	negative regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0070076	P	histone lysine demethylation
GO:0070988	P	demethylation
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901360	P	organic cyclic compound metabolic process
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:1990837	F	sequence-specific double-stranded DNA binding
GO:2000026	P	regulation of multicellular organismal development
GO:2000028	P	regulation of photoperiodism, flowering
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2000242	P	negative regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140096
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11446	KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase	EC:1.14.11.67	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network