result

Gene information

Detail information of g335631

Location

Gene	Chr	Start	End	Strand
g335631	CHR3	297357750	297359242	+

Sequences

CDS

>g335631.t1
ATGGATCAGACTGCAAACGCCATAAGTGGGAAAACAGCCCGTGCCTGCGATGGGTGCGTGCGCAGACGGGCGCGCTGGTACTGCGCAGCCGACGACGCCTTTCTGTGTCAGTCTTGCGACTCCTCCGTTCACTCTGCTAACCTTTTGGCGAACAGACATGACAGGGTTCGACTTAAGACTTCGTCGATGAGGTCCCCGCTCGCTGAGCTGGACTCCGAACTGCCAACCTGGCACAGGGGAGACAGGCAGCGTGCACGGACCCCACGTCATGGGAAGGGTTCCAGGCCCAAGCCCATGCTTTTGGTCCCGGATGTCGAAGCTTTTAATGAGTTTGAGGAAGAGGAGGAGCAGCAGCGGTTTTTGTATGAGGTGCCGGTGTTGGATTCCATCGTGGAGTTCTGCACACCGTTGGATTTCGAGTGTGTGGATGGATCGACTGAAGAGGTGAAGCCAGCAAGGCAGTTTGATTTAACGGTGGATGATGGAGATGTAGGTGCTGGAGGGTTCGATCCTACAGATGTGGAGTTGGCGGAGTTTGCCGCTGACGTGGAGAACATGCTAGGGCATGGACTGGATGATGTGGACTCTTTCTGTATGGATGGGCTAGGGTTGCTGGATGGGAAAGAAGGTCAGGGACAAGTGAAGTATGAGCACTTAGATGAACATAACGAAGATATGAACTTTCTGGTTAGTATGGAAGATATTGAAATGGATATGTCTAGAGAGTCGCTCGACTTCAAATTGGAGGGAGGTGGGTCCCAAATGACAGAATCTGAAGTGCATAATAAACAGAATGCATCGATGGGTATAGGATTGAAGATGAACTACGATTCAGTGATCAATGCATGGTCATGCCATGGCAGCTCGCCTTGGGCAGATGGGGTCAGACCACAGCTCAGTGCAGATGATTGCTGGTCAAACATCGTGGGAACATGGGGAGCGCCAATAGGAGAGATGCAAGGAGCTAGTTATGGGTTAGGGATAGGGCAAGTTGGCAATTTTGATGGAGGGAGAGAGGCTAGGGTTTCGAGGTACCGAGAGAAGAGAAGGACAAGGCTGTTTTCGAAGAAAATCAGGTATGAAGTGAGGAAGCTTAACGCGGAGAAGAGGCCAAGGATGAAAGGGCGTTTCGTTAAAAGGACTTCTTTGCCAGCTGCTGCTAATGCAGCTGCTGGGTCAAATGGCTTTCCTTATGCATGA

Protein

Gene

>g335631.t1
ATGGATCAGACTGCAAACGCCATAAGTGGGAAAACAGCCCGTGCCTGCGATGGGTGCGTGCGCAGACGGGCGCGCTGGTACTGCGCAGCCGACGACGCCTTTCTGTGTCAGTCTTGCGACTCCTCCGTTCACTCTGCTAACCTTTTGGCGAACAGACATGACAGGGTTCGACTTAAGACTTCGTCGATGAGGTCCCCGCTCGCTGAGCTGGACTCCGAACTGCCAACCTGGCACAGGGGAGACAGGCAGCGTGCACGGACCCCACGTCATGGGAAGGGTTCCAGGCCCAAGCCCATGCTTTTGGTCCCGGATGTCGAAGCTTTTAATGAGTTTGAGGAAGAGGAGGAGCAGCAGCGGTTTTTGTATGAGGTGCCGGTGTTGGATTCCATCGTGGAGTTCTGCACACCGTTGGATTTCGAGTGTGTGGATGGATCGACTGAAGAGGTGAAGCCAGCAAGGCAGTTTGATTTAACGGTGGATGATGGAGATGTAGGTGCTGGAGGGTTCGATCCTACAGATGTGGAGTTGGCGGAGTTTGCCGCTGACGTGGAGAACATGCTAGGGCATGGACTGGATGATGTGGACTCTTTCTGTATGGATGGGCTAGGGTTGCTGGATGGGAAAGAAGGTCAGGGACAAGTGAAGTATGAGCACTTAGATGAACATAACGAAGATATGAACTTTCTGGTTAGTATGGAAGATATTGAAATGGATATGTCTAGAGAGTCGCTCGACTTCAAATTGGAGGGAGGTGGGTCCCAAATGACAGAATCTGAAGTGCATAATAAACAGAATGCATCGATGGGTATAGGATTGAAGATGAACTACGATTCAGTGATCAATGCATGGTCATGCCATGGCAGCTCGCCTTGGGCAGATGGGGTCAGACCACAGCTCAGTGCAGATGATTGCTGGTCAAACATCGTGGTACTTCACTTTTTATAGCACCTTTTTACTTTTATTTTCAAAATAATTTTCAGAAAAAAAAAAGTCTAACTGTATCAAGCTTCCTATTATTAACTCTAAACAAGTATATACTAAGTTCAAATTTGTGACCTCTGGTGAGCTAGTTATTCTACTTACCAACTGTGACACCATACATGATTATAACACCAACTTTTATAGCATAAACTTTTTATGGCGAAGGCTTTTACAGCATTATTTTTTATAGTGAAGGCTTTTACAGCATTAGCATTATGCGTATCTTTCTTGATATTTAGGGAACATGGGGAGCGCCAATAGGAGAGATGCAAGGAGCTAGTTATGGGTTAGGGATAGGGCAAGTTGGCAATTTTGATGGAGGGAGAGAGGCTAGGGTTTCGAGGTACCGAGAGAAGAGAAGGACAAGGCTGTTTTCGAAGAAAATCAGGTATGAAGTGAGGAAGCTTAACGCGGAGAAGAGGCCAAGGATGAAAGGGCGTTTCGTTAAAAGGACTTCTTTGCCAGCTGCTGCTAATGCAGCTGCTGGGTCAAATGGCTTTCCTTATGCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	PIA39732.1	1.3e-87	hypothetical protein AQUCO_02600289v1
Swissprot	Q8RWD0.2	4.2e-70	Zinc finger protein CONSTANS-LIKE 16
trEMBL	A0A8K0MYW3	1.1e-88	Zinc finger protein CONSTANS-LIKE 16

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G25440.1	43.20	7e-73	271	BBX15	B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g335631	AT1G25440.1	412	192	13	1	380	2	403	43.20	7e-73	271
g335631	AT1G68520.1	415	202	11	1	386	2	405	41.69	6e-69	258
g335631	AT1G73870.1	399	185	17	13	383	19	390	39.85	2e-58	223

Ortholog group

Species	Genes
Allium cepa	g106481.t1; g127554.t1; g335631.t1
Allium fistulosum	AfisC3G00856; AfisC3G05466; AfisC3G05750; AfisC6G02539; AfisC8G00883
Allium sativum	Asa2G00770.1; Asa2G06674.1
Arabidopsis thaliana	AT1G25440.1; AT1G68520.1
Oryza sativa	LOC_Os02g49880.1; LOC_Os03g50310.1; LOC_Os06g15330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	13	56	28.6	1.1e-06
PF06203.11	CCT	Motif	338	380	64.7	5.2e-18

Gene Ontology

Accession	Ontology	Name
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network