result

Gene information

Detail information of g337128

Location

Gene	Chr	Start	End	Strand
g337128	Scaffold_69138:HRSCAF_452224	909979	917304	-

Sequences

CDS

>g337128.t1
ATGATGAACAAGCGAATCGAGGAAGGTTTCTTGAAGCTGGAATTGCCCCAGGATACGCCCACCGGTACACCGGTAGGGACGAATTCTGGAGCTATTCCAGCTCCAGAACCCCCTCCGATCGATCCTTGTTGTGATGAGTCATTTGGTTCTCTTGGATCCACCTGCAAATCAAAGGCAAGGACGCTTGATGAATCCAGATACATTTTCATAGATAACGCTGCAGCTGAAGAAGATTCAGAAAATAGCATCCTGATATCCCAAGAACCCCCAATCGAAGAGCCCGTACAAAATCTAGTGGAACCAAAACCCTCGTACGAAGAAGACTACTTCCGTGAGGTGTACGACCTCAAGTCCAAATACACAACATACGACACTGATAAAGAGACCATAATCCAAGATGGAAACACATCGTGCCTAGCCACCTGTAGTTCAGTCGACATCGAAGAAGACGACCCTTTTAGAGGGCAATCTTCATACTCATACGATGAATCAGGAGGCGGTTTCACTTCATGTGTTGGTACACGATGGTTCCGTGCTCCTGAGTTACTCTACGGTTCTACCTCTTATGGCCTTGAAATCGACCTTTGGTCCTTAGGCTGTGTTTTTGCTGAGCTTCTCGGTTTGGAAACTCTTTTCCCTGGAACTTCTGATCTTGATCAGTTAGCTAGAATCATAAACGTTTTGGGAGACATTAATGAAGATACATGGCCTGGATGTTCCAAATTACCAGATTATAACAAGATCTCGTTTAACAAAATTGAGAATCCGATTGGGTTGGAAGGGTGTTTGAAAAATAGAACTGGTTCTGAGGTTAATCTTGTGAAGAAACTGCTTTGTTACGATCCTGCTAAAAGAGCTACTGCAGTGGAGTTGATGACTGATGGTTATTTTTCTGAAGAGCCGTTGCCGGTACCCTTGGATGAATTGAGAGTTCCTGAGAAGAAAGAAGACTGTGATGAGAGTTCGGAAGAAGAGTGGGGAATTGGTAGAGAAATGCAGTCGGATTCTGATTTTGACGAGTTTGGAAAAGTCGATGTCGTGACTACTGATAAAGGCTTTTCTTTGAGATTTTTATGA

Protein

Gene

>g337128.t1
ATGATGAACAAGCGAATCGAGGAAGGTTTCTTGAAGCTGGAATTGCCCCAGGATACGCCCACCGGTACACCGGTAGGGACGAATTCTGGAGCTATTCCAGCTCCAGAACCCCCTCCGATCGATCCTTGGTGAAGTTGGTTTGATCTTAAGTCTTGAGTGATTGTTCTAAGATGATCCTGAGTGCATGCATCCATATAAAATACTAAAATTGTCAACTAATTAAGATCAAAAGGCTAAGGTTTCAGCAATTTAGAAGTTGAACAATATGAAATATTAACAATACAAAATTGAGACCAACATAACCATAGGTTCATCCAATTCAACCGAACAACGAATATACTTTCACTTAGAGATAGTAGTGTGCGGTAAACTCACATATAAGCACTTGAATTGAAGAATAAACTCGGATTAGCTTCTCTTGATAAATACCTGGGTTATTTTTAGAAATTGCAACAAAGAGATTACAAACAAAAGATAAAAACCGAGATTACTAACCCTAATTGATTCACCGGAGGTGTGGGAGATTATCTGAAGATTTAATTATTGATCAAAAGCCCCTTGAATTGCACTTAGATTTGGGATTAATTTATGTTCTAGGGTTTAGAGAATAAGAGATTTCTTATTCTTAGTTTTTTGAGTTGTAAATGGAAATGAGAAGGAAATGAACGTAAGTTTCATTTTCTTCTAACAATACTTCTGTTTGGGCCAAATGGGTTCGAATGCACCCAATAAGAGAAAATGTTACTAATTTCCTTTGTTTACTAATTATAAAACACTACAATGGTTTATAAATTAAAATTTTGATTCCACAAAATTTGACAAACACTAATATGTTAGAAATTATCATTTTAATCAATATTGAAGTGCTTTGTATAAATTCAATATAATTTTTGCGAATGCAAATTATTATCATCATTTTGATAAAGATGGATTATAAATTTACAAAAATCTCATTTTAACAATAATCTCAATATTAACAATTTTACCCTAAATGCCAAAATTATATAATCGATTTAATAATATCTCGAATTTAAATTGAAATCCTCTTTAAGGAATGAAACTCGTTTCTCAAATAAATCAAATCAACTATTCTCAAAAACTAGATTTAATTTCACAACTAAATTTTCACAGACCACAAATTAGAATTAATTATCCATAATTAAACTTAATTAATTAATTAGGTAATTAAGAACAGAATTGTTACAATGGTGGTGAATGTTGCAAATCGTTGGTGAGATTCCGTTGGTGGGTGGTAGAGTTATTTCGGAATTTAAAAAAAACATGGTGGAAATCATATTAATTGAATTTCCATTATTAATAGTAAAGATGGTGTTTGTGACCAAAGGAGAGAATTATACTTTATTTAGTGAGGGAAAAGTGTGCATTCTTTGTTCATCACGGTTGTCATCGCGAAATGGAGCAAGGACGTGGAAATGTACTACCCTATATATTTTCATGAGTACAACCAAAAATAATTTGCTAATAATCTTTACAGCAAAAGATATTATATATTTATTGTTCCAAAGAGACACTGAGCAAGAACACAAGGGTTTGAAAACAGGCAAAAGATTTGAGGACTCAAAGATGATTTGATCAATTTCATTTGAGTAATATATTTCTTTTTTGTTTTTGTTGAACTTTAAAACGTGTTAAAGATCAATAGATTGTACAACCAAATACATAGAAAAAAATATATGGTGCTTAAAATTGTTTTAAAAACATTAAATACCCATCTAAAATGGCAGCGATGATCAACCAGCTTACCCTTCTGGTAGATCGGACTTTTCAATAAATCCAGCATATCTTGATTTCAAATCTATTGAAAACTTTAAATTTGAAATCCGATAAATAATACCGTTCATCTTGCTAAAGAATTTACTAGAGATTTTTTATAGCTAAACCAAAAAAAAAGAGGACAATTAATGGGGGCATAGACAACCATTTATATAATTTCTTGAAAATTATTGATTTATTAGTACTACTGGCAACCCAGATTTCTAATAATATCATAATATTAGTTATGGAAAAATCATTATAGTTTACTATATATAGCAACATTTAAAATGAATGATACTAGAATTTATTTAATATAAACAACTGTGATGATAACAAACCTTATTCATTCTGAATATGAAGTTTCAACTAAAATTTACATTTGTAAATTTTGTTTTTTCCCCTTATACATTAAATTTGCATGATCTTAGTCGAAGTTTACTCCTTTATAACACCGATTGAATGCATTTTCAACAAATTAATGTTTACAAATTATAGATAACTATTCTTTGAAACGAGTATAATATTCTTTAGGGGACAATATGTAAAATCATTGACTGATCTACTTTAGGGGTAATATTCTTACCGAGTATTGATCCATCACAAAGCATTAATTGATCTACTCAAAAACAATAGATTTGGCATCAGATATATTTGATAATAGATTTTGCATCTTCTCCTGACTTTCCTGTTCTTCTCCAAATTAATATATCAAAATTTAATTCAACTCAGACAAACTCATGTTTAGGAACAACAGGACCGCTAATTTCATTTTTGATCTTATGTTTTTTATTTTATTTTTGAAAATATAAAATAAAACAGTCATTAACTCAATACTACCACTGTATGAACTATCTCTTTGTCAGAGTCATGACGCCTACTGGCCAGCGGTTGGCTTTACCCCTACCAAGGAGGATATGTAGCTGACTAGGCTGGCAGTTCTTGATATTTTATTTTTTATTTCGACTTCAAACACTTTCATCTTGAATCAACATCCTTTTATTTTAAAGAATGAAACTCAAAATCAGTCAAAAAAGCATTTATTCATCTGACATTTAAATCATTTTGCTATTAATTCAACTCAATCTTTTCTTTCGTTCAAGTTAAAACTCTGTGCTTTTAGTGATTCTGTTCATCGAAAATCATCTTAAAGCTATTTGACACCCATCACTATTTCCAACGACGTACTTCAGTACATTGTGGCGGGTTTTAATAAAGATTTATACATTTATTTTTGATCTAGACTATGTTCTTTGCAAAAGGAGGTTATTAATATTGATTGAGATTGGAAGACTTATCTTGGATTGTAAGGAAGTTCTTTGTTTTGTTTTGTTTGTGTGTTTTTTTTTTTTTTTTTCATTCAAGAAAGGATGATATTGGAATTCCGAAGTGGTATGCTTTAAGACTCAACATATGGTATTTTAAGACAACCAGAACAAGTATATGTTGTGCTGTTGTGTTGTCTTATTTCTGCTAGCCTTTAATTGGCTACCACTCTCAATCGATAGAAAAAAAAAAAAAAACGGAAAGAAAGAAAAAAAAAGTAAGAAAGAGAACGCAAATTTTTTGGTAGTGGTTCGCTAAATTCACTAGCCTATGTTCACTTCGTTGTTTTTATCGATTATTTTACGCCAAAACTGCCAAGTTTACAATAGGGTTTCAAAATTTAATCTCTAATTCAAAAATGAAAGCCTCCCCCCAGCAAAATTTAATTAAAAGGCTCAAAAGTCATTTATTTGTCGAAGATATGGCTATTTATAGCTGAACTGGGTTTTGTCCAAGCCTACAAACTTGTCAAATCCAGTTTGAAATCGTCGGTCAAGGAGATCTAACATATCAGGAAAGAGATCAGGTCAAATCTGGATCAATTCTCTAGGCTTGATGGATCGGTACCGATCCATGATTTTGGTCCAAAACTTGTGCTTTGCTTCAAAATGTCTATCTTAAATGCTTTAAAGTTTTAAGGGCAAAACGTTTTTTGATGGTACGATACCAATTCATCACTAATGTCCAAAACTTGTCCTTTTCAGCTTGGCTTAGTCCATTGTGCAAGAACTCAGAAGTAAATTTTGCCTTTCGATGAATCGGTATTGATCCATCCATGGATCAACATGTATCCATGGACTTGGACAAAATTTTCTTATTTCTTCCTTTGTTCTTTGTGTTTGATCGTCTTCGAGTATAGAGTCCACTCCTTTATCGTTTTGTTGCCAATTCCAAGATTGGAAAAATTGTAACACTTGCCCCCAAAACATGTTTTTGTGAATAAAAAACGTATTTTGATTAAGAACATGTATCGGTACCGACAAATTGTCATCTTTATTCTTAGGTCATCTATCATATCAGTTGTGATGAGTCATTTGGTTCTCTTGGATCCACCTGCAAATCAAAGGTCACTCCGAACCCATCAAGGTCAAGTACTCGTATCATTGCTTAAATATTAGCCATAAACCATTATCATCCCACGTTCCCTCGAAGGTCATATATCATAAATAAATCATATATATTGCTATCATATAATATAAATCATGTGTAAGCATGTAGGACTATGATTTTACCCATAATCGAAGCATTGCTTACAAATCGGTTGGTATCTCCCAACATCCCATTAGAAGCAAATCTGATTAGATCACAGTATCACCAGTAAGTAATCATATATCAACATCTTCTTCTGTCGAGCTTATATCATCGTTTGCATATTTATCATCGTTTCTTCAATCTCAGCTCTGGTCACAAAGTTTGAGGGTGGACTTTAACTAGGTAAAACTTCTTTGCTGCTCTCATGCTCTAATTGATTTCCTCCGACTGTAGTTTCCTAGTGGTTGATTTCTTCATTCTTAACGGATTAGATTTAAGTTGCTTCTTGGTGAAAAGTAAAAAAAAAATGTTAACCTTTGATTTGGGCTAACACACCCACTCAATAGAAAAGATGTAAAACTGAAAGAAAGCAAACGGAAAAGTAAGAATGAAAATACAAGAATTTTTATATTGGTTAGGTAAACCGCCGACCTACATTCACTTTGTTATTTTTATTGATTACTTTGCACTAGAACTGCCATGTTTACAATAGGATTTCAAGATTCAACCTCTAGACGCAAAAATGGAATCCTCTCCCTAAGCAAAAGTTAGTTAAAGTGCCCAAAAAACCTTGCTTTGGTGAAGACGATGGCTATTTGTAGTTGAATCAGGTTGTTTCAAGCCTAGAAACTCGTCAGATCTAGTTTGAAATTGTCAGTCAAGAAGATCTGCAATATAAAAGAAAAGATTAGGTCAAGTCTAAACCAATACTCGAGGCTTGATGGATCACTACCAATTTATGGTCTTGGTCCAAAATTTGTGCTTTTTTTCCAAGAAGGTCTTAGTCTTCAACGCTTTAAAGTTTTAGAGGCAAAATGATCCTTTTGATAGATTAATACCGATTCATCATCCATATTCAAAATTTGTTTTTTTCTTCAAATTGGTTTAGAGATACATCGTGCAAGAGCTTAAGGGAAAATTTGACTTTTTGATGGATCAGCACTGAACCATCCATGGATCGACATCGATCCATGGACTTGGCCAAATTTCTCCTGTTTCTTCCTTTTTTTTCTTTGTGTTCGATCGTCTTCGAGTCTAGTGTCCACTCCTTCATCGTTTCATAGTCAATTCCAAAACAGTAGGAAATTTACCGGTAACCATGCATCCTGACATGCATCCTGACATGCATCCTGCCACACTAATCACACTTCTTTTCCTTATTTTTTAGTCTACAACATGCATCCTGACAATGTAATGATATAGCACATATACAGAATTCAGTAATTTTCCTAAAGATGGCATCTGAAAGCATTTCATTTATGCTTGCTGTACAAAAGAGTTGGTCTATTTTTGTTTGACGTTTCCCAAACAGATAAACAAGTATTAAATGAAGAGAAATTGGAAACTCACCCGAGTAAAACATCTGCTTCAGTTATTTTCTGGAAAACGGTATGATGTACCAGTAATCAATGTTTTTAAAATGAGATTTAAACTGTAATTTGTAAGTCAAATTTTGAATCGAAACTGGAGTTTAGCCCTTGAGCAGTAAATGATCTTATTATTAGCCAGTGGTATGACATACTGAATAAAAATACTGGCTAGAACCTATCCAATAAATACCTTTTATTACATCACAATTTTATCCTTGTTTTTTCATATCTACACTGGAAACTATGGTATATGACAATTAGCTATTATAACAATATGCTGTCAGAAGATGCAAGTTATCCTTAACTTAGTCTGAAGACCTTTTTTTTTTACTGCAATTTCGCAGACAATATTTTCAACTGTTGGAAATGAACCCTACTGGGCTCGCTGCAGAAAAAATGTTGGATGGTGCTTGTCTAGCACGAAACCAATTCCTTTGAGTTTATATGTTTTTATCGTCTGTCTGAGAAACGGACACTACATGAAGAAGAAATGTGGTGTAAATAGTTTATCGGAACGTAACAATAATAACACATGTACTAACATCTGTTTTAAAATTGATTACAATTTGCCATGGCATCCTTTAAATCATAGGTCCCACTTTGTTTGAGCACCTTAGTGTGTAAAACCCAACTCTTTTCCCTTAAAGTGTCATAAAAATATGTGCCTATACCCTAAATTTGACTGATTTTGTGATAATTTTAGGCAAGGACGCTTGATGAATCCAGATACATTTTCATAGATAACGCTGCAGCTGAAGAAGATTCAGAAAATAGCATCCTGATATCCCAAGAACCCCCAATCGAAGAGCCCGTACAAAATCTAGTGGAACCAAAACCCTCGTACGAAGAAGACTACTTCCGTGAGGTGTACGACCTCAAGTCCAAATACACAACATACGACACTGATAAAGAGACCATAATCCAAGATGGAAACACATCGTGCCTAGCCACCTGTAGTTCAGTCGACATCGAAGAAGACGACCCTTTTAGAGGGCAATCTTCATACTCATACGATGAATCAGGAGGCGGTTTCACTTCATGTGTTGGTACACGATGGTTCCGTGCTCCTGAGTTACTCTACGGTTCTACCTCTTATGGCCTTGAAATCGACCTTTGGTCCTTAGGCTGTGTTTTTGCTGAGCTTCTCGGTTTGGAAACTCTTTTCCCTGGAACTTCTGATCTTGATCAGTTAGCTAGAATCATAAACGTTTTGGGAGACATTAATGAAGATACATGGCCTGGATGTTCCAAATTACCAGATTATAACAAGATCTCGTTTAACAAAATTGAGAATCCGATTGGGTTGGAAGGGTGTTTGAAAAATAGAACTGGTTCTGAGGTTAATCTTGTGAAGAAACTGCTTTGTTACGATCCTGCTAAAAGAGCTACTGCAGTGGAGTTGATGACTGATGGTTATTTTTCTGAAGAGCCGTTGCCGGTACCCTTGGATGAATTGAGAGTTCCTGAGAAGAAAGAAGACTGTGATGAGAGTTCGGAAGAAGAGTGGGGAATTGGTAGAGAAATGCAGTCGGATTCTGATTTTGACGAGTTTGGAAAAGTCGATGTCGTGACTACTGATAAAGGCTTTTCTTTGAGATTTTTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247091.1	4.1e-104	LOW QUALITY PROTEIN: cyclin-dependent kinase F-1
Swissprot	Q5Z754.1	1.5e-90	Cyclin-dependent kinase F-1
trEMBL	A0A5P1FRV5	2.9e-104	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G28980.1	56.37	8e-83	303	CAK1AT;CDKF;1	CDK-activating kinase 1AT

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g337128	AT4G28980.1	259	103	3	106	357	223	478	56.37	8e-83	303
g337128	AT4G28980.2	259	103	3	106	357	223	478	56.37	8e-83	303
g337128	AT1G67580.2	147	75	3	168	307	562	707	43.54	3e-26	116

Ortholog group

Species	Genes
Allium cepa	g337128.t1
Allium fistulosum	AfisC2G04045; AfisC2G04046
Allium sativum	Asa6G01703.1
Arabidopsis thaliana	AT4G28980.1; AT4G28980.2
Oryza sativa	LOC_Os06g22820.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	165	297	70.8	1.1e-19

Gene Ontology

Accession	Ontology	Name
GO:0000079	P	regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0001932	P	regulation of protein phosphorylation
GO:0001934	P	positive regulation of protein phosphorylation
GO:0003674	F	molecular_function
GO:0051726	P	regulation of cell cycle
GO:0003824	F	catalytic activity
GO:0005829	C	cytosol
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009888	P	tissue development
GO:0008047	F	enzyme activator activity
GO:0008150	P	biological_process
GO:0019887	F	protein kinase regulator activity
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010015	P	root morphogenesis
GO:0010073	P	meristem maintenance
GO:0010074	P	maintenance of meristem identity
GO:0010078	P	maintenance of root meristem identity
GO:0010562	P	positive regulation of phosphorus metabolic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019207	F	kinase regulator activity
GO:0019209	F	kinase activator activity
GO:0019220	P	regulation of phosphate metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0019827	P	stem cell population maintenance
GO:0019912	F	cyclin-dependent protein kinase activating kinase activity
GO:0022622	P	root system development
GO:0030234	F	enzyme regulator activity
GO:0030295	F	protein kinase activator activity
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031399	P	regulation of protein modification process
GO:0031401	P	positive regulation of protein modification process
GO:0032147	P	activation of protein kinase activity
GO:0032268	P	regulation of cellular protein metabolic process
GO:0032270	P	positive regulation of cellular protein metabolic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0033674	P	positive regulation of kinase activity
GO:0036211	P	protein modification process
GO:0042325	P	regulation of phosphorylation
GO:0042327	P	positive regulation of phosphorylation
GO:0043085	P	positive regulation of catalytic activity
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0043549	P	regulation of kinase activity
GO:0044093	P	positive regulation of molecular function
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0045859	P	regulation of protein kinase activity
GO:0045860	P	positive regulation of protein kinase activity
GO:0045937	P	positive regulation of phosphate metabolic process
GO:0048364	P	root development
GO:0048507	P	meristem development
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050790	P	regulation of catalytic activity
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051174	P	regulation of phosphorus metabolic process
GO:0051246	P	regulation of protein metabolic process
GO:0051247	P	positive regulation of protein metabolic process
GO:0051338	P	regulation of transferase activity
GO:0051347	P	positive regulation of transferase activity
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0065009	P	regulation of molecular function
GO:0071704	P	organic substance metabolic process
GO:0071900	P	regulation of protein serine/threonine kinase activity
GO:0080090	P	regulation of primary metabolic process
GO:0097472	F	cyclin-dependent protein kinase activity
GO:0098727	P	maintenance of cell number
GO:0098772	F	molecular function regulator
GO:0099402	P	plant organ development
GO:1901564	P	organonitrogen compound metabolic process
GO:1904029	P	regulation of cyclin-dependent protein kinase activity
GO:1904031	P	positive regulation of cyclin-dependent protein kinase activity
GO:0140096
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08817	CCRK; cell cycle related kinase	EC:2.7.11.22	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network