result

Gene information

Detail information of g337439

Location

Gene	Chr	Start	End	Strand
g337439	Scaffold_69166:HRSCAF_452252	175893	180340	+

Sequences

CDS

Protein

Gene

>g337439.t1
ATGCATGAAACTACCTGGTCTTTGATAATAGGGATATTGATTGGGATTGTCATTGGAGTTCTTGCAGCGACATTCACATTTCTCTGTATTAGATACCAAAAAAAGAGCAGTCGAATTGGACTTTGTTCCAGGAGTTCTCAAATTTCATTACGAAGACCTATTGCTGATACCGATATATCAGATTCGGCAACCGATCTAGAATCATCACTGTCGTTCGAGATGCATAAGAGAAAGAATACCCTTACCTTCTCTGGTATCCCTAGATATTTATACAAGTAATCACCTTTTAAATCATTTTCAAACTTTCGTTTAATTACCATCTTGCTTCCAATACTACTGAATGCCGCCTTCTTTGCTCAACTTCTCCTTGCATGCAAATACCAAAATAGACTAAAAGAATGTGTAGCAATTGAAAACAAAAGGAAGATGCCTGTAAAGTGCTCTGGTTTGTACTTGAATATAGACATTGTATTTATTTTTCATTTTCTTTTTACAGTTAATGTTAGGACATTCATCTTGCACTGTAGTGTGTATATTTTTACGTAATTAATACTTGCACTTCTTGATGAACTTATTTATTGGTAGTAGATTAATATTTTATGCTTTATCCATCCATAGGTATTGGTTTGTAAAATTCTCTTTTAGGTTGTCAAATTGGTTCCAATTACTTTAAATATTAAAACTTTTTAAAGCATTTGGTTAAAAATTATAAAGCTACATTTTTTTCCTTCAAAGAATAAAAGAGTACTCTAGACTCTGCTAGAATAAAGTAATAGCATTCTTCATTAGTCTATAAAGTGTCATTAAGCTAACATGTGATGAAGTACTTCCACTGAAATACATTAAGCGTGTTTAATAAAATACATTAAATGTACTAAAATACCTTCGTTAAATTGTGTAGAATGTACGTAATAATACTGTACTAAATTACCATGAATTTCATATTTATCAGTTTATTACTAAACTTCATTTTGATTTAAATAGCTTACCTAGGTTTCATTGTTTTCTATAATTGCTATTTCGCTTAAAAACTTTTATATGTTATGGATACGCATGTAATATTGCCGTATATGGTAGCCAAAGTGATGTATGTCGGTTCTATGGGTGCAATTATTTCTGCACCCTAAATTGCTATTGGTCTTTTACATGGAAATTGGAAAACCGATATAGCATACTGAGGCTTCAAGACTTTTAACCTTTTTAGCCTTATAATAATTTACAGTATAATATCTTCATGGATTTTATTCTACTTAATTTACAGGGATTTACAAAGAGCTACTCATAATTTTACAACGGTAATCGGTCATGGTGCATTTGGTACGGTTTATAAAGCTCAAATGGCGACTGGTGAAACATTAGCTGTTAAAGTGCTTGCTTCTAACTCTAAACAGGGCGAGAAAGAGTTTCAATCGGAGGTACAATCTCTGGGATGATATTCTTATACACAATGGTATAATAGTTTGTCAAATAGTCTTTTTGAAGCACATATGACATCTTATATAGAAAGCAAAAGGCTACTTGGAGAAATGCTTGACTTAGTAAACTTAGTTTACAATCTCTGGGATGATATTCTTACAAAAAACTTAATGCGCAATCCATCTGTGCTGTTTTCATGAAGATACATATACAACCCATGCTTGCTGTCTAATGTATTGATGTGAAGTTAATGATGTTTGCCGAATAATTGCACATAAAAATATGAAATAAAAAATTATGCTACTTTGTGTTATCCAATAGTGGATAAATGAGTATCTTCCTACATCTTCATTGACCATCTAATGCACTAGGCAAGAAGTTGTACGAAACAAATTTCTACCTCAATATAAGACCAGACAAGAAATAAAAGTCGTAGATATTGATAGTTGGAAATGAGGAGTTTGTCGACTGGTTATTTTGTAATTCATGGACAGTTGAAATTTTAAATGATGGTTGAAAGTGGGGAGAAATATTCTCGTTCATAGGACATGCTTACACAATTTTTTATAGACTTTTATAAAGGGTCTTTTCAACAAATTGGCCTGGGTGAATTGCCGGAATATAAAAATGCTTCTAATATGCTTTATGTTTAATTGCAGGTTATACTTCTAGGAAGATTGCATCATAGAAATCTTGTAAATTTAGCAGGCTATTGCATAGAAAAGGGAAAGCATATGCTTATATATGTTTACATGACTAATGGAAATCTTGCTTCTCACTTGTACAGTATGTTCAGAACTTACTTTTATTACATTTTAGTTTCTGTAATATGTTCAATTCCTACTCATCAAGAATTGACTGAAGATCCTTTGAGTTTTGTTTATTTTTTTCTTGTGCAATTTTGATTGTGTATGTTTTGCTCCTTCATGTTGAGGTTGTGTTTTTTTTTTTTTCCTTTCAAAAACGCGCGCGCACGCACAGATATATGCATGCAATCCCAAATGTTCATTAATGATGTGGTTGAAGAGCAAAGATTATGGAATGTTTCTTTACAGCTTATTAAGCACATCCAGAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTAACTTCAATTCTTAATAATTTTGGTCTTATGAGCGCTTGCACGTTTAATGTACCTGCAGCGTTTGGTTTGACCATTGGCAAAAAGATCTATAACTAATCATCGAAAAGAATAATGTTGCACAAGGGAGTTGTTAAAGCAAATTTTGCAGCTGTTTCTCTTTTTTCCGTTTCTTCTCTTTCTTTTTTTGATCTACAATTTTCTTGTTCATAGTACTAACTATGAACCATTAAGCCTGGAATATGAGGATTAATATTGCTCTGGATGTTGCAAGAGGCTTAGAATATCTCCATGATGGTGTTGCTACTACTACAATATTGATACAAAATTTAGTAACCGCATTGCCACAAATGCTAAAGAGTACTGCTTATTGATGCAGGCAATTCCACCAATAGTGCATCGGGACATCAAATCTTCAAATATATTATGGATAGATTCATTGAGAGCCAGAGTATGTATCAACTGTCGTTGTTAATTTATGTTCATTTGCTTGCATTAACCACTATTTTTGCAAACCATTAGTGTTGCTATAATTTGCTAACACATGCCAAACAACTGAACGACTGTCTAAGGCCTAAAAAATTCATTAACTTGCACTTCTATCCCCCCCCCCCCCCCCCCTCTCTTCCTCTCTCTCTCTCTCCCCATATGGTTATTATGTATGTCTAGTGATTCGAATCTTGAATCCAAATTCACTAGGCTCGTTGGGTTTGCTATTTTATGGATATATCATATCACCCTGATTTCAGAAGATAGTGTTCGTATTTTTGTGTATAATATAATATATCATTTCATTTCTTATGTATATCATACTATACCTGTATAATTATTTATGTTTTATAAACGTAAATTCAATATACCTAACAAGAATATCATGAAAATTATGAAAACAGAATATGATTTGAACCAACAAAAAAAACGATAAATAAAGAGATAATTATTCTATGGCATTATAGAAAGTGTGAAAAAGCTTCGTCACACTAACCTATTCGCTTTATTAATAGCTATCTCTATTTTCTATATTGCATTCCAATTTACAGGTCGCAGACTTTGGTTTCTCAAAAGAGGTCAGTCCAAATGCTTCCAATATAAAAGGAACTTTTGGCTATCTTGATCCTGAGTATATACTATCACGGAAGTTCACAGAACAAAGTGATGTGTATAGTTTCGGAGTTCTACTTTTCGAGTTGATTACTGCCAGAAATCCACAACAAGGTCTTATGGACTACGTTGAACTGGTATGATCTCTCTCTCTCTCTCTCTGTTTTGCAAATTTATTTCTGTACAGCTTATTAGATTAATGCGTATGAGCAATCCTGCTACTTTGTTTGTTATATTATGTTACTATGAAACACATATGTATTGATAGTTCTATATACAAGAGTGTTTTTTGCATTGCACTTTATAGATGATCAAACCGGTTCCATCTCAGCATATGATTTGAAATTAAACTTTTTTTAGAGCCAGAACCAACCTCTGTATTTTATTGTACTTTGCAACATACATTTGATCATATAACATTAAATGTGATATGTCGATTTTTTATGTACATAACTTATGCAAACTATATGATTGACTATATGGGAATAATGATTGTAGGCGACAATGAGATCAGAAGGAAAAGAAGGATGGGAAGAAATAGTGGATCCTCGACTTCAAGGGAACTACAATATCAATGAGCTAAATTACATGTCAGGTTTAGCATATAGATGCATCAAGAGAGTAGGTAGAAAAAGACCCCGGATGAGAGAGGTAGTTCAGTGCTTATCCAAACTCGCTAGAGAAAACGATATAATAAAGAGGCAACTGAAGATAGGAGATCCGGAAAGTAGCTTAGATTGTAAAAGACACAGCTCTATTTCAGACGTAGAAAGACTGGAAAGCTCAGTTGGTAGCGCATCGGATATTGCTCGTGTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241184.1	4.6e-125	calcium/calmodulin-regulated receptor-like kinase 1
Swissprot	Q9FIU5.1	9.1e-110	Calcium/calmodulin-regulated receptor-like kinase 1
trEMBL	A0A8J5G2U0	2.2e-121	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G54590.2	57.58	7e-123	437	CRLK1	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g337439	AT5G54590.2	389	136	5	1	360	1	389	57.58	7e-123	437
g337439	AT5G15730.1	300	127	3	75	360	90	386	52.00	1e-87	320
g337439	AT5G15730.2	302	127	3	75	360	90	388	51.66	2e-87	319

Ortholog group

Species	Genes
Allium cepa	g337439.t1
Allium fistulosum	AfisC1G02980
Allium sativum	Asa7G05749.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	103	345	140.0	8.1e-41

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0005768	C	endosome
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009409	P	response to cold
GO:0009628	P	response to abiotic stimulus
GO:0009631	P	cold acclimation
GO:0009987	P	cellular process
GO:0010008	C	endosome membrane
GO:0012505	C	endomembrane system
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0031090	C	organelle membrane
GO:0031410	C	cytoplasmic vesicle
GO:0031982	C	vesicle
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044433	C	cytoplasmic vesicle part
GO:0044440	C	endosomal part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0050896	P	response to stimulus
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0097708	C	intracellular vesicle
GO:0098588	C	bounding membrane of organelle
GO:0098805	C	whole membrane
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network