result

Gene information

Detail information of g341452

Location

Gene	Chr	Start	End	Strand
g341452	Scaffold_69632:HRSCAF_452718	648224	652912	-

Sequences

CDS

>g341452.t1
ATGTTTCACTTTCTGTATTATTGGAAGTGTGGCAAAATGGAGATTAACGATGAGTCGGGACATGAATTTAAAAATGCTCAAGTGTTCAGAGAATTAATGAACTCATGTGAAGATGCAAAGGGGACCAAAGCAAGTTCAGGTGGGGTATATTATGACCATAGATGCCTTCTGTTTAACGATATTGAACTTAATCAAAGCAGCATGTTGGGAAGCAACATTCAGGAATTCAACAAAAGGGAAGATGCAAACTCTGTTCCGCTTTCAATCAGTTTAACGTGCAATGATGCTCATAATTCATGGATGAACACAGATGAACATCCCCCAAAGGCAAGGAAACCATATACGATTACAAAGCAAAGGGAAAGGTGGACAGAAGAAGAGCACCGGAAGTTTCTAGAAGCTCTTCAACTCTATGGCCGTGCTTGGCGTCGCATAGAAGAATTCGTAGGCACAAAAACAGCAGTCCAGATCAGGAGTCATGCTCAGAAGTTCTTCTCGAAGGTGGTTAAGGAATCGAAGCCTATAGAGATTCCTCCTCCACGACCTAAAAGGAAGCCGGCCCATCCTTATCCACGTAAGATGGAAACTTTTAACGTATCATACGGGCGGTCATGTTCACCAACTGAACAGGAAAATGGTTCACCTACATCTGTTTTGACAGCATTTACCCACCAGAATATGAACTTTTTCTCTGCATTTCCAAATCAGTGCGCATCTCCAGCTACTTCTGGTACTGGATCAAACGAGCAAGAATCATCAATTGAAGAAACTGATCAGAAACACAATCAGTCTCCAATGGATGTGGATTTGTCAAAAGAAGCCTCGATCTCTTGCTTAAAGCTGTTCGGGAAAACGCTAGTAGTTGCCGAAACAGACAAATTAAAGAACTCAAAGTCATCGACATTAGTAGGTGCTGAGAAGCAAAAAGAAATAAGCACAAGCATTAGTTCGTCACTGCCTCTTCTTCCAATGTATAGAGATGGTATGAATAATCGTGTCACACCGCTGCCATGGTGGTCGTATTACAGTAGCATTCAATTTCCTTTTATTCAACAACAAGATATGAGCAGTAAAATGAACACTACAAACAGTGTTCGAATCGTAAAAGACAACTCGGTTAAGGGGTTCGTGCCGTATGAAAAAAGTCTGGTAAAAATGAAAGAGCAGGACTGTATGAAGATGATGGATGAAGGAGATGATGAAGAATTCACAGGATTGCACTTATAG

Protein

Gene

>g341452.t1
ATGTTTCACTTTCTGTATTATTGGAAGTGTGGCAAAATGGAGATTAACGATGAGTCGGGACATGAATTTAAAAATGCTCAAGTGTTCAGAGAATTAATGAACTCATGTGAAGATGCAAAGGGGACCAAAGCAAGGTGATTATTATTACAATTAAAACTAGACAATTTCATCAGTATGAAAGGACCAATGCAACTATCTGCCTACAGTTCAGGTGGTTAATCATCTCTAGAACTGGAATCAATGTAGTCAAAGAAGAAACCGTATAGATTGGCAATATTTTTCATCCCTTTTTAAGCTCTGTTTGGAAAACGGATTTCAACTGAAAAGAGTTTGGACAAGCATACCGATCACTTGAACTCTTCACATTAATTTTCTGTATCGTATTGCCTTCATGGTGGTGAGGGGTATATTATGACCATAGATGCCTGTAAGTTCAGCTATGCATAATTTATTTTTTGGTCATGTCAGTGTCAGGATCGACAATACTGTTGATTAACAAATGTTCGTGTGTTTCAGACTTTGAGCTTGCATTCATAACACATACAGTATCGAAATATTTCATGATTTCTTTCAATATACATTGTCCATGTCAATTACACTCAACTCATTGATGGAAAAATATTACGCATACCATCTATGTCATACCAGATTTGTAATTAGTCAAATCAACCTGGAATGCATAGTGTGACCTATAATGTTTGCATAAGAAACATTCAATGTAATGGCTGGTGTAGCTCCTTGTATGCCTTCATCCCAATATCCACACACATCATCTCAAGGAATAGATTAAGTTTAAGCGCTGATCTCTACTGTTTGTGTCCTTTATTGTTTATTGCACATTTCTTATGCGTTTAAGCGACATTGTTTTTTGGCATGAGATGAATCGATCTCATCACGTAAACTTGTTACTCTACAATAAATTAAAAATCACTCATTAATCACCTTAGATGAAATACGTTAACATGAGATATGCCTGACCAATTTAATATTGTTTTAAATCTCCTTCATCTCGTCCAAGATCTCCCCAAAGACTCTTTTGCACTTGGGTGAGATGAGATTTCAGAGGTAACTTTTTATTTGTTTCATGTTGATCCCACGAAGATCTTAAGATCTCAATGTAAGATTTAAACCTAGATGACTAGATATTAGTCCGAGATTTAAAACCTTGCCAATGTATGTTGTGGTTTTTGGGTTGACTTGAAGTAGCAAATCAGAAACTGTAGGATTACATGTGGTGCTTCTTCACATTGCTGGATTGATCAGCTGAATAAATCTGTAAGAGGGGGGGGGGGGGGGGGGGGCATATGCTCTGTTCCCATTGAGATAGAGTCCTCTATCCATAGCTCTCTTATCCTCGTGAGCCCAACAAAATCTCATCCATTGATTTGTGAATCGGCGGTCGATTGTATAGTGGATCTCGGTTGTTGAGCAGATTATTGTAACTAATGGATGAGATATTGTTGAGCATATAGAGAAAGAAAAACCAGAAACATGAGATATGAACTCGTTCCCGCTGCATATCTACCGGGTTTTACCCAATGAATTTAGCATTTTTGGGTGTTTCAAAGACATATAATATTTGTATTTTAACTATTAAGGTTGATTGTATTATTACCTTTGTTTGGAGATCTTAATGCCTTCAGAACCGTCTTGTAGATTAAAGATTGTGTTTAGTCGAATTTTGGATTTGTTTTAGGTATTGTTTTCTTTTCCTGAAATGGAATAGATTTTAGAATTCATATATGTAGGTGATTCGTGTTCATAATTATATTCCTATTTTCTCATCATGATAGTCAACTGGTGTCACAGTGGTCATCTTTTACCTTGGCTTCTTTGGTTCTAGCTATAACTAGCTATTAGTTTTCAAGAAGATGTGGATGCTTAACCAAACCAAATTGCTATGCTGTATAATCAACTGAATCAAATTAGTACGTAGAAGAATAATTTAAGTTAACTTTATGCATCACGTAACAGAGAATGTAGGCGTAAAGGGCATCAACTGAATAAATTGAACAAATACATCTGATAGCTGTACATTTTTTTTTTACAGTAAGCAATATTTTAGTTAAAAACTGGAGAGTCACACGGATGATGCACGAAGTGTCATCCAAAACCACTGGTCTGCCTTTATTTACTGATTCCACTCTTCTCCTTTTTATTTGCACAATTTCATAGTAATAATTTTAGTAGCACTTCCTTGTTTTTATGGATAATGTCCATGCGTTTAACAGCATCACACTAATCTACTGGTTTATCTTAATTTTCTCCCTCTCTTTCTCCTCATATTTTTCTATTTGTTTTATTTCATTAAATTGTAGCTCAGTGGATAACTCAAAGGCTATAATCACACCTTTAGTTATTACCACCACATATGGTTAAAAAAATTCGCTTAATTTTATTTTTCTATATAAGTGCAAAATAAACGTAGCACGTAAAATTTTAATGACAATTAAACGTTCAACAAAATTTTCCATATAGCTGTACATTAAAGAAAACACTAATAATCTGTAAATTTTGTTTCGGATCCTTCAAAGATAATTAATGTTCTCTGATTAGCTAATAACACTTCGAATAGTAAGATATAAACAAAAATCTGATTCCTGATAAAAAATCTTATGATAATATATATATAAGAGATAGCAACCGGAAGATATCATACAAAGGTATAAAAATAATAATCTATTTTTGAAACTATCAAATACCTTTGTGCAAAACATCTGAACAGATAATTTTCCCATTATATATTTAGCGAGTAAATTGTACTTGCATGCTTAACAAAGTAATAAAATAGTATTAATTTTTTGTTCCTTATCTCCAAATTTAAATTATTGACATGTGGCAATGTCCCCATGAATTTAAACCACAAGATCAACCGGTTTTCACGAATGCCCTGCTGATGTGGCGACATGTTCTGCACTGTTTTTAACTTCCTCTTTTCCTTCCTCTTCTTTATATCTCTCTTTTTTCTAATATTGGATTAGATTTTTAACTCTATTCTATTTATCTTTTACTCCATTTTATTTTCTTCTTTAGTCTGTTTAACGATATTGAACTTAATCAAAGCAGCATGTTGGGAAGCAACATTCAGGTACATCTCATCTATTTCTTACTTTCAGTAGTTTAATTTTTTTTTTTGTCACAATCAATTTGTGCTAGTAGTTTGAAAAAAATGTAGAACGATTTACTTATTTCCAATTACATGGATTCAATTAGTTTTTGTATGCTAATGTGCAATATTCATTTGGTTGATATTTTGATGCTGAGCAAATGAGTGATCAACATTCTACTATCTCGATGTAGAAACAAAGAAAACGTATGCAGAAAATTGACAATTCATATGTTACTAGGAATTCAACAAAAGGGAAGATGCAAACTCTGTTCCGCTTTCAATCAGTTTAACGTGCAATGATGCTCATAATTCATGGATGAACACAGATGAACATCCCCCAAAGGTGCCATTTCAATGCAATAAATACTAAAACTTGGCTTGTCAGTTTTTGATTTTACTCTTAAAAAATTCATCAGGCAAGGAAACCATATACGATTACAAAGCAAAGGGAAAGGTGGACAGAAGAAGAGCACCGGAAGTTTCTAGAAGCTCTTCAACTCTATGGCCGTGCTTGGCGTCGCATAGAAGGTACATTTCTGCTAGTAAATGATCCTACATTTGTATGTTTATGTGAATCATGAGTTAAAACTAAAAGTTCTGCTTCAGAATTCGTAGGCACAAAAACAGCAGTCCAGATCAGGAGTCATGCTCAGAAGTTCTTCTCGAAGGTTTGTTTCCTCAAAACAATACTTGTATGATGCATTCACAACTTCAATGAGCACTGCAATAGTGTCTTTGGATCAATTACAAAACACTTAATGCATTTGTATGGAATCAGGTGGTTAAGGAATCGAAGCCTATAGAGATTCCTCCTCCACGACCTAAAAGGAAGCCGGCCCATCCTTATCCACGTAAGATGGAAACTTTTAACGTATCATACGGGCGGTCATGTTCACCAACTGAACAGGAAAATGGTTCACCTACATCTGTTTTGACAGCATTTACCCACCAGAATATGAACTTTTTCTCTGCATTTCCAAATCAGTGCGCATCTCCAGCTACTTCTGGTACTGGATCAAACGAGCAAGAATCATCAATTGAAGAAACTGATCAGAAACACAATCAGTCTCCAATGGTATCTCATGTTATATAAATAATCATTGTATTTATTTACGTTATATGGTTCTAGTTCATATCATCTATCATTCCAGGATGTGGATTTGTCAAAAGAAGCCTCGATCTCTTGCTTAAAGCTGTTCGGGAAAACGCTAGTAGTTGCCGAAACAGACAAATTAAAGAACTCAAAGTCATCGACATTAGTAGGTGCTGAGAAGCAAAAAGAAATAAGCACAAGCATTAGTTCGTCACTGCCTCTTCTTCCAATGTATAGAGATGGTATGAATAATCGTGTCACACCGCTGCCATGGTGGTCGTATTACAGTAGCATTCAATTTCCTTTTATTCAACAACAAGATATGAGCAGTAAAATGAACACTACAAACAGTGTTCGAATCGTAAAAGACAACTCGGTTAAGGGGTTCGTGCCGTATGAAAAAAGTCTGGTAAAAATGAAAGAGCAGGACTGTATGAAGATGATGGATGAAGGAGATGATGAAGAATTCACAGGATTGCACTTATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262219.1	9.4e-65	protein REVEILLE 2-like
Swissprot	F4KGY6.1	1.4e-41	Protein REVEILLE 1
trEMBL	A0A5P1EY72	3.9e-52	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G17300.1	44.69	3e-41	166	RVE1	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g341452	AT5G17300.1	273	122	9	104	358	39	300	44.69	3e-41	166
g341452	AT5G37260.1	208	74	6	93	290	11	197	49.52	1e-35	147
g341452	AT1G18330.1	199	81	6	105	290	35	226	49.25	9e-35	144

Ortholog group

Species	Genes
Allium cepa	g341452.t1; g341453.t1
Allium fistulosum	AfisC3G02802
Allium sativum	Asa2G02237.1
Arabidopsis thaliana	AT5G17300.1
Oryza sativa	LOC_Os03g02762.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	120	163	49.0	4.5e-13

Gene Ontology

Accession	Ontology	Name
GO:0001101	P	response to acid chemical
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0007623	P	circadian rhythm
GO:0008150	P	biological_process
GO:0042493	P	response to drug
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009719	P	response to endogenous stimulus
GO:0009723	P	response to ethylene
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009734	P	auxin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009755	P	hormone-mediated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009845	P	seed germination
GO:0009889	P	regulation of biosynthetic process
GO:0009909	P	regulation of flower development
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010600	P	regulation of auxin biosynthetic process
GO:0010817	P	regulation of hormone levels
GO:0014070	P	response to organic cyclic compound
GO:0046677	P	response to antibiotic
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032350	P	regulation of hormone metabolic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032870	P	cellular response to hormone stimulus
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0046885	P	regulation of hormone biosynthetic process
GO:0048511	P	rhythmic process
GO:0048580	P	regulation of post-embryonic development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0065008	P	regulation of biological quality
GO:0071310	P	cellular response to organic substance
GO:0071365	P	cellular response to auxin stimulus
GO:0071495	P	cellular response to endogenous stimulus
GO:0080090	P	regulation of primary metabolic process
GO:0090351	P	seedling development
GO:0090354	P	regulation of auxin metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0097305	P	response to alcohol
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network