result

Gene information

Detail information of g341968

Location

Gene	Chr	Start	End	Strand
g341968	Scaffold_69683:HRSCAF_452769	48176	49813	+

Sequences

CDS

>g341968.t1
ATGCTAGAACCATCATCAAAATTTACTTCTAATACTGAGCCACAGTTCGCCATACCACTTCAAGAGATCCTGCCTGATAATGTACATACCAACTCCCAATCCATTCCCCATAAAAAACCCATTAAGAGATCAAGCAAAATGGTGCGCATTCCCTGCTTAAACCCACAAGACAGATTATCTTTTCTAAACTCAGTTCGTAAGGTGAGAATAACTTTTGATTCTTTACGACTTTTATTCTCTCATGAAAGGGAAGCTCATCAACGTGCAGCTTCCTTAATGAACGCCTGTGGTTTATGGTTGAACCGCGACAAAAGAATTATCGGGTCCATTCCAGGAGTCAACGTGGGCGATATATTCTTTTACAGGATGGAACTACTTATTATCGGCTTGCATGGTCAAAACATAGGTGGTGTTGACTACATCTCAGCTGCCAGTAGTGGGTGTGGTGAACCAATTGCAACCAGCATAGTTGTCTTAACCAGGGACGAACACGATTATGATAAAGCTGACGAGTTCATTTACACAAGTCCTCCTAAGCAAAGTCAAAGGGCGAATAAGCACTGTGCAGGCAGGAAGTTAGAAGAGGACATTCTTGCTTTAAAAAGAAGCATGACTGATGAGGTTGAAGTTCGAGTTATTAGAGACATCATTTGTGATTGTAGCCCAACCAAAAAAGTTTATGTGTACGACGGGGTTTATAAAATTGTACAATGGTGCAAGGAAGAAGCGGCAAAATCCGGGTTTTATATTCATAAGTTTAAGCTTTTGAGAATCAAAGGGCAAGAAGAAACAGGTAGCTCAAAATTTACTAGAGCCACAAATTTGAAAGTTTGTCCACTGTCAGTGAGGCCGAATGGTTATTTGAGTTTGGATATGTCCAAGGGAAAAGAAAGATTCCCAGTACTGCTGTTTAACGATATCGACGAGCTAGTTGACCCTTTATGGTTCCAGTATGCTAATCAACCATTATTTACAAAGCATACATTTGAAAAAGTGTTCAAGAAAACTAGACACGGCTGTGAATGCGTAGCTAGTTGTGGTGCAGATTGTTATTGTGTGACATTGAATGAAGGAGAGCTGCCCTATGACGAAGATGGGATTCTAAAAAGAGGAAAACCTGTTATATACGAGTGTGGACGTTGGTGTAGGTGCCCACTTAATTGTGGCAACAGAGTTAGTCAAGGAGGCATGAAGAAGAACTTTGAAGTGTATAGAGATTTGACTACAGAATGGAGCGTCAGGTCATTGGATTTCATCAGAGCTGGGTCATTTTTATTTGAAATGAATGGACTAGTGCAACCTAAGAAGGAAGTGACACTGAATACTGTAGAATGTGAGAGAAGTTTGGTTTACCCAAACGAATTTCCAACTAGATGGAGAGAATGGGGAGATACATCGGACGTAATTCCAGATAATAAGCCGCGTGATCTTCCTTCTTTGCCTGAGCTAGAATTTGTAATTGACGTCTCGACGAAGAGAAGCGTTTCTAGCTATTTGAGTCACAGTGGGGTCAGCCCAAATGTATTTGTACAATATGTACTTTATGATCATCATCATCATGCCTATCCTCACCTTATGGTGTTTGCTTCTGAAAATATTCCACCTCTCAGAGAACTTAGCTTCGACTATGGAAGATAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262180.1	5.7e-166	histone-lysine N-methyltransferase family member SUVH9-like
Swissprot	Q9T0G7.1	4.9e-122	Suppressor of variegation 3-9 homolog protein 9
trEMBL	A0A199VTA2	4.7e-154	Histone-lysine N-methyltransferase family member SUVH2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G13460.1	44.25	2e-126	449	SDG22;SET22;SUVH9	SU(VAR)3-9 homolog 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g341968	AT4G13460.2	522	269	8	39	544	122	637	44.25	2e-126	449
g341968	AT4G13460.1	522	269	8	39	544	122	637	44.25	2e-126	449
g341968	AT2G33290.1	516	274	6	41	544	128	638	43.60	4e-118	422

Ortholog group

Species	Genes
Allium cepa	g341968.t1
Allium fistulosum	AfisC6G05981
Allium sativum	Asa5G03838.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02182.14	SAD_SRA	Domain	107	261	114.8	2.5e-33
PF05033.13	Pre-SET	Family	292	391	63.9	1.5e-17
PF00856.25	SET	Family	411	544	34.1	3.1e-08

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0000228	C	nuclear chromosome
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000775	C	chromosome, centromeric region
GO:0000785	C	chromatin
GO:0000790	C	nuclear chromatin
GO:0000792	C	heterochromatin
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005694	C	chromosome
GO:0005720	C	nuclear heterochromatin
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006259	P	DNA metabolic process
GO:0006304	P	DNA modification
GO:0006305	P	DNA alkylation
GO:0006306	P	DNA methylation
GO:0016570	P	histone modification
GO:0006325	P	chromatin organization
GO:0006464	P	cellular protein modification process
GO:0006479	P	protein methylation
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006996	P	organelle organization
GO:0008150	P	biological_process
GO:0008168	F	methyltransferase activity
GO:0008213	P	protein alkylation
GO:0008276	F	protein methyltransferase activity
GO:0009292	P	genetic transfer
GO:0009294	P	DNA mediated transformation
GO:0009892	P	negative regulation of metabolic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0016043	P	cellular component organization
GO:0016070	P	RNA metabolic process
GO:0016458	P	gene silencing
GO:0016569	P	covalent chromatin modification
GO:0016571	P	histone methylation
GO:0016740	F	transferase activity
GO:0016741	F	transferase activity, transferring one-carbon groups
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0031047	P	gene silencing by RNA
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0032259	P	methylation
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0036211	P	protein modification process
GO:0040029	P	regulation of gene expression, epigenetic
GO:0042054	F	histone methyltransferase activity
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043233	C	organelle lumen
GO:0043412	P	macromolecule modification
GO:0043414	P	macromolecule methylation
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044427	C	chromosomal part
GO:0044428	C	nuclear part
GO:0044446	C	intracellular organelle part
GO:0044454	C	nuclear chromosome part
GO:0044464	C	cell part
GO:0044728	P	DNA methylation or demethylation
GO:0044764	P	multi-organism cellular process
GO:0046483	P	heterocycle metabolic process
GO:0048519	P	negative regulation of biological process
GO:0050789	P	regulation of biological process
GO:0051704	P	multi-organism process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0080188	P	RNA-directed DNA methylation
GO:0090304	P	nucleic acid metabolic process
GO:0098687	C	chromosomal region
GO:1901360	P	organic cyclic compound metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11420	EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT	EC:2.1.1.355	Lysine degradation	ko00310
K11420	EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT	EC:2.1.1.355	Longevity regulating pathway	ko04211

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network