result

Gene information

Detail information of g344100

Location

Gene	Chr	Start	End	Strand
g344100	CHR5	150196559	150201403	-

Sequences

CDS

Protein

Gene

>g344100.t1
ATGGTTCGGTGCTGGTTGGTTCGGCAAAGTGCATGTGGTCATGTTGTTGGCCAGGTTGTTGCACTTCCCTCTCTTGTTTGGTTCCCTCCTCATGCTCTAGTTAGGTTTCCACTTGATGTCACATTTGACTCCATTCCTTCCAAACAGATGATCCTGTTCGACACCCTGGGTACCGAACAAGGGAGGGTCGAAGGTTTTCCCCTTTCTCTACCTATCTACCTTCCTTCCCTTAACCATGCTCGAGTTACCTTCCAAGCCTCCCAATGCCTTGGTCTCGTGGGCGAAATTGCCCATAACAATAAGAGTTCAAGTTTGGTACACCAGGTCTTGAAAAGTTTACGATTGATGTTAAACAAAATGGAGACTACAATGATAGTTTGTGATGCGATTCAATTCATATTCTGGTTTTATAGAGTCATAAGGACTTCGAAACGAGACGATTAGAGTATCGTGATATATTATTCCATACAATGCTGTATACTGAGCAAGTTTGCATCGCTTGACTACGATCCTGAGATTTGATTTGCACAGATGATTTGCTACATGAGGCATGGTTGTCTCAATAGCACTTGTTAGGCGGAATCGATATAGAGATTTCGAGATGTCATGTCTTGCCAGCAAAGGCATAGACATTGAGCTACTTTGTAGCAAGGGTTATGAGTCTGAGGTTACTTGTCCCTCAGTTCTTTTGGTAAATAAATGATGCTGTTTAGACACGTATGTATCTGCTTGAGTTCGATACAGTTATAATAGGTGGATGATGCGTTTGAACGTTATGATATTGGCGTCATGTTGAGGGTCATACTTAGCGGAAAATTTGAGACCCATTAGCCTATTATGTAGCGGTTGAGTTGCACTATGTTGCTGTAAATGTTAATAATCTATCAAATCATTGATTAATCAGTATATATATCATGAGAAATATCATGAAAAAAATTATAAATGATTAGGTATTCTTTTTTAATTATAATAGAATAGTAAAACACATAACTTGTACTTTTGACGGTGAAGAAAGATACGATTTTTAAGGAATAACAATGTTTGTTGTCTTGAATGAAAAAAAGAAATAAAATTAAAAAAAAAATTAGAGTGATTCTTGTTTTATGGTCATTGCAACCACTTTTTCATCCATTCCAAGACGTTTTACGCACTGGAGAAGAATTGAAAGAAAATGAAATTTATGCAATAAAATTGGACAAAAAATAAGCATATAGTTTTGGAGACCTATCCCAACTTGCAATAATCTATGACCATACAACTTTTGGGTGAGTAATACGGTCTAAGTATGCTACCTAACAATCTTTTTATTGACAGAATTTCGTGTGTGTGGTGGGAAGTGCTATTTTATTCACACTACGAGAACAAAACATCATTCCTCATTGGTTGAAATCAATGGGCTCCACATGGACCCCAACGATTTCACCCAATGAGAAGTCGTGTTTTGTTCACACTGAGACAAACAAAATAGAATTTGGATGGTGGGGAAGTGGTTATAATAGAAAACCATCCGTACCTTGTCTTTTCACATCATTTGTACCGCCTCAATTTTTATTCAATTCTACAAAACCGTAGTATCATATCATCATGTGACATTTTTGCCTCTAACACCATCAAAATACGTTGTTACACTGGTTATAATAGGGCTAGTCACAATATGTTAACTTACATACATGATCCATGATAACTTTTTACGTGCCTTCTCCATACATAGATCTTTATTTATTTTATCAGGTTGAACTGCGAATGGATTGACTTGGTTTTTCGCGATTGAGAGCCTGCGTAGCTTTATTAACTCCTATTTCTTCTCTCTTTCTTTCGTTCTTTCTCCCGCACATTCTACACATCTCCCTTACATATAACTTACTCATATTTCTCTCCCTTCTTTTCCTGAATTTTCATTTATAATATAATAATCAGTTTCTTGTTCATGGCTGTAAAAGTTAGGATTTGAATAGTTTTAAACATATTTCATTAGCTATACATACATTCGATCATTAACACAATGTCGTTCTGTGGTACACAAGATAAGTGCAAGGCCTGCGACAAAACTGTGCATTTCATCGACTTACTAACTGCTGATGGTGTAAATTATCACAAGTCTTGCTTTAGATGCAGCCAATGCAATGGAAATCTTACCGTAAGTGTGTACATAACTTCTTCTTCTCTTTTTTTTTCCTCCCCGGCTCGTCTTTGCTCGATAATTTCTGAGAAGTTACATGCTAACATACACAAATGTGCATGTAACATTATGAATACATACTTCCATGTACATGTACATTGAAATGTCAGAATAATGATCAGATATTAGTGATGTTAAATTCGTAAATTTTACACCTTCGGTTATGATTACTAATTGATTCAGATGTGCAACTATTCATCCATGGACGGTATTCTGTACTGCAAGCCTCATTTTGAGAAATTGTTCAAAGAGACGGGCACATTCAATAAACGATTTCTAACCCGTAAGTTTACTACTTTATGTAATTAACATCTAAATATTTTATAGGATTATGACTTGTCCTTTCATTGCATGTTTCTTTTAATCAATCCTGGATTATACCCATTCAGCCCCAAAGTCTCGAAGTAAAGATACAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTAGTTATCTTTCTGATTTGTTGTTTGATTATTTGGAAAAGGATGTTATATATTTTGAATATATTAGTATGATAATCAACTCCTGATAGAGCCAAACATCCATTGTATTTTTATCATAGTATGTGATCAATTTGCTGCAAATTCGGTCCACTTAACAAAAATAATATCAGCATTATGCATGGATGAGATGTTGGAAAACTGTCTTTGGTTTCAAGTACTGAAATGTGATAAAAATGAACAGATAGAAAAGGTAACTAGTCCAACCGTATAACGGTGAACCGTTAAAACTGTAAAATTGAGAAGAAAAACTTTTATTGCAATTTATTTGTTAACTTAAAATATTACAAATACCAACAGAAACAATGCATGGGAAAATAATAATTGCTTTATCAAAAAAACAATTAATCATAATGACACTTGTACAATTAAGTATAATTTTATTGAAATATAGTCATCCTAATCTTAAAAAACCAATTGTTTTACAATTTTTGAGAATTTTCAAACCCAAATAGATAATACAATATAATATTTTTATGATTGAATTTCTTTTTTGGGTCTTTAATCCAATTCATCGAAAATGGTGATCTACTTCTATTATTTCTTGTCCATAACCCCATTTTATGGTCAACTTTTACAATGATAAAACGTGGTCCTAATTAGCATAGCAATATGTATTCTTACTATGGAGAAATATTCGAAATAAAAGTAAAACTTAATTGAAAAAGGGGGAAAAAAATCGAAGATGCCACAACTTTTATTTTTGGTCATGGTCAATTCCACTATCTTAATTCAATCTATAAGAGTACAGTTTTAATAAACATAGACGTTATTCAATATGTGGAAGTATAAACAACAACAACAACAACAACACCAACAACACCAACAACAGCAACAACAGCAACAACAACAGCAACAACAACAAGAATAATAATAATAATAATAATAATAATAATAATAATAAGATGGTTCACATCATTCTTAAACTGTAGGGAAAAAAGAGAGTTTTAAGGTTCAAATTTGCAAATAACGTGCTTATACAAATAGCCTCGGGTTTAAACCGATATATGCCACTTCTTTTTCTCCTCCAACGCAATATAACTACCCCAAGAATCCATATCTTAGCAGCACATCTTTCTTACCCTTTGTCATTCTCTGACTCGGTGACCTTGCAGTACATAAGCCTGCATGCATGCAAAAAGAGAGCATATAAGCCTGTCAGATCACTTTCTTGCAGGCATCGCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008777895.1	5.5e-34	LIM domain-containing protein PLIM2b-like
Swissprot	Q9M047.1	2.7e-30	Widely-expressed LIM protein 2B
trEMBL	D6MJW4	4.7e-35	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G61230.1	44.67	3e-31	132	PLIM2c	GATA type zinc finger transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g344100	AT3G61230.1	150	82	1	170	318	3	152	44.67	3e-31	132
g344100	AT3G55770.6	87	31	0	169	255	1	87	64.37	1e-30	130
g344100	AT3G55770.5	87	31	0	169	255	1	87	64.37	2e-30	130

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00412.19	LIM	Domain	178	233	44.1	1.6e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003674	F	molecular_function
GO:0003779	F	actin binding
GO:0051015	F	actin filament binding
GO:0051017	P	actin filament bundle assembly
GO:0030036	P	actin cytoskeleton organization
GO:0007010	P	cytoskeleton organization
GO:0005488	F	binding
GO:0006996	P	organelle organization
GO:0007015	P	actin filament organization
GO:0008092	F	cytoskeletal protein binding
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0022607	P	cellular component assembly
GO:0016043	P	cellular component organization
GO:0030029	P	actin filament-based process
GO:0044085	P	cellular component biogenesis
GO:0044877	F	macromolecular complex binding
GO:0061572	P	actin filament bundle organization
GO:0071840	P	cellular component organization or biogenesis
GO:0097435	P	fibril organization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09377	CSRP; cysteine and glycine-rich protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network