result

Gene information

Detail information of g344199

Location

Gene	Chr	Start	End	Strand
g344199	Scaffold_69994:HRSCAF_453080	259924	264517	+

Sequences

CDS

Protein

Gene

>g344199.t1
ATGACGAAAGGAGAGCATGGTTGGGTCGTATGGTCGAGTCTTATGGTCGGGTCGAGATTTTTGGAGTTGGTCTCGTGATTTTTGGAGTTCGAATCGTCGTGGAGAGTTAAATGAATGGATTACTTTCATCTTTCATTTGCCAATGGCATGATGGTCTAGAGAAGGGATGACAATGACTGTGAACAGGCTTAGGTCGAGGCCGAGGCAGGAAGGCCGATCGGAGGAAGTCTAGTGGCATGTGGTGGTGGCCCGATTAGGGTTTCAACCTGTATATTTTTGGACTTAGGTTTTCTTTACCGCTAGGGTTGATCAAGTGCATCGAGCGTGGCGTGGCAGGTTGGAGGTGAGGTGAGACGTAGGCGATCTACGTGCTACAACGCCGGGTTTAAATTCCATGACGTATGCTATGAGACGTCTCTTAGAGGTCGGGAATGGCCGAGGTGATATCATGTTTAGTATTATCCATACCATCCATTGGCTTCGGTACATTTCTATAGAAATGTACTGTGCAAGAGGTAGCCTTTACCTTGCTATTCATTGGAAATACGTCCTCCAATAAGTGCCTTCGGACTTAGTTGTAAACCTATTATGCCATCAAATTTAACCAATGTAACAACTTCGGCTATTTGAATATGCTTATTTGAAAGGTTTATAAAGAATGTCATTAAAAATAATATCATTGGGTTTTACGTAAAAATGATTTGGTTATCATAAGGTAAAAACTCATTCCGTGTTTTTGTGTGACCTGCTTTTATGAGCCTTTTTTCCAATACTCGTATTTTGAGTTTTTCACACCAGTCTCATGACTTACCCAAAGTTTGTTTTCTTCCCCATAAACTTTTGGTGCTCTATTTTTTCGAACAACCTAGTAGTCAGGTTTAGCATGGAGCATTTTAAAAGAGCTCGGAGCATGAAGCTAGAAGATTCTTCTGAATATTATTATCCATTTCCACCATACTTATGTACGACTGTATTCTGCATTTGTAAGGATGGAAATTTATAACTGCCCATGTTAATGTTTAGTTAAAATCTGATAAATGTATATAAAATTTTCCATTATAAAGATTATATGTTGAAATAATATATGTTATTCCACTCGTGTAAGATTTTGCTCTGTGTCTTTATTTTCTTTCTTCCATAACTATTCATCTTTTCATACAAATTGAGTTGGACACGTGTGGTTTGTTCTTAAATTGTACGGAATTGTGGGTCGTTACACTTATTGATACGTTGCATGCGGGAGTTGTCGATACTAGATTTGATATGCTTCACGAAAGTGTTCGGCTGTTGAGTAAGTTATGTTTACCTTATGGTATATTCTATCTAGGAAAATAGGGCACTCGGAAGGTACATTCTAATCCTTGTTATAGAGATTCGCTTTAGGTTTCCATGAAAAATCCATATTCTAACGTACTTAAGTGGTTTTGGTTATACTCTTAATATTGTTTATTTAACTGTACTCTGGAAAACCAGACGGACCGGTAAACTCCTAAGGTGAATTTAGTTGTCTCTAACTACTTCAGCTCATGGCACCTATAACCTCCGAATTCTATTTTTTACAAGAGTATGAGCAAGGTAGGGTTCGAACCTGGGTTAGTTACCAAACCTTAGCACCCTCAATATTTTTATGATGTGATCAGTATAAGCATCACAGTTGTTTTCTAATTTATATTCTACACCCTAGACATTATCTATTATATTGCTTTATTTACATATTATATAGTGATTCTTTTGAGGGGATAACTATCACGTTATTCTGTGTAGTCTCTAAAGTACTATTAAACGTTGGTCGCATATTTCTTGAGTTTCTAATAACAGACTTATGTGTGACTCATGGTTTTATATTTTTCATATTTTCATGGGTGCTTTTTCGAGTAGGTGAGAAAGATGAGTTTTCAGTAGTGTTTATTGGAGCTCGAGGAGATGAGCTGGATGTTTCACATACCATAGTATTCCAGCTGCAATACTATTATGTATATATCAGTAATTGTGAGGACAAGTTTTTATAATTTTCTAGGCTGATGCTAATATTTATAATTGTAGCTCTGAAATGCTGTGCATCTTAGAGTGACAATTTGTACTGTCTTTTGATATTATATGTTATCGTTCAGCAGTGAGACTCTGATATTGTGTTCTCTTCTTTTTTGTACTATTTTCACTTTTGTTTTATTTACCCTACAAGTTGTCTTTTCGGGTCTTGGGTATTCAGCACACGAATACCATATATGCATTTAGTGTCGACATTTTGGGGCAAAAAGGCGAATCGTTACAAATTAGGTTGGGCTTAGTTGTGTCGTATTGACTTGAGTTGAACCGGGGTTCGTCGAGTTGTCTGGGGAATTATACTTGCAAGAAATTAGAATAACGGTAGCAATAAAACATGGATACCGCCTCGGATTGTTAGCATACGATTGCTTAGTAATGCTTTTCCTGTCTTGGCCCAGTCTATTTCCATTAAAAAAAAATCTTTATGCAATTTTAATTATATGAAAATCTTTTAATCCTGGATGATCAATATTCTACACTATCATGAAGTAGTTTAAACATCGCATGGTAGATCCAATTTTAACTTCATTTGAGTAATTCTGTTGTACCTGCATCATATGAGATATTCTTTACACTTCGTCGATCGTACAATTTGTCTTAAAAAAAGTGTTTCGACAAAGAGATTCTCTATGTTTCTTTGGTTCCTTATTACTTTATTTTGTATAATTAAAAGGGTACTAGCATGATGTTGGGAATCCCTATATATATGGTATGCCAAAATCCGAATTTTATTTCTTCAAAAAAAAAAGGTTCAGAGCGCCCCTCGATCATCTTTTTTTTTCATTATAAAATGTTGTGTTACCATGACATAGAAAATACATATACCTAACAGATTTGAGGTTTGTATTATTTTTAGAAATTGAAAATGCTGATGTGTCGAAAAAGCACAGAGCATTCACACTATTTTTTGATGCTTTCATAAAAAATAACTAGGAATTTATTTTCCGATGCTTCCATAAAAAATAACTAAGAAATTATTTTCTGACTTTTCTAACAATGGACGTGGATAATGTGTTGGAATTCCTTCATACAAAAATAGTGTAAGTAAACATCGTAGTCGTTTTGTGCATAAAAAATGACAAATTTACGCAAACTGTCATTGTATAATGATAGTTGTGTGATGTGATATTAACCGTATATTTTCACCAATTTTTTGTTTTTTATAATTAATACCAAACCATATAAGTTTTAGATCGTTTTTGAAGAAAAATAATAAAAGAAAGTCACTTTTCCATTGTGCTTTGTTTTTTTGGCTTTGCACCGAAGGTCTCTATTTTCGATGTTGTTGTAAGAAAAGTCTCTATGATAATAAGTTTGTAAATTAAGTCCATGTTTTTTGTAAATCAGAAAGCGCAAACTATCTTGCGCTTTTCTTATAAAAGTGCAAGTTAACTTGCTCTTTTCAAAAATTTAAATTCTTTTAAAATTTTCAAACTTTTAAAAAAATTCAAAATTAAAAAGCGCAAACTAGTTTGCGCTTTTCTGATAAAAGTTGCAAGTTAGCTTGCATTTTCTGTCAGAAAAGTGCAAAGCATCTTGCGTTTTCTATTTTTCAAAAAATAGAGACTAAATTTATATACTGACTTTTCTTATAACAACATCAAAGATAGAGACCTGTAACTCGTTTCTTGTTGTTTTTTTTTCTTTGTCGGCCCTTTTTAAGTGTCCGCACATAACAAAATTTTTACCCGGTTCTTTCAATTTACAAAGGTTACATTTTGGACATATGATTTAAGTGTGCAACAAATGGCTCTAGAATTAAAAATGAAGACGTACTGAAAAAACTATAAAACAGCGGCAGTGGAGATCCATATCCATTCAACCACGTGATAAAATAGCCTTTAAAAATACCCCATGTTGCACATTTCCTTTCTCTCTATCCACAAGAACAACAGTACTTTCTTCACTGTATATAATAACAAGCTCTCATCTCCTCTTCATTTCATTTCATTTCATTTATACGACATTCAAGCTTCACAAAAGCAATCAATTAAATTTAAATTTACTAATCATGGATCAAAATGACTGTAACACCGAGCTTAGTTTACGACTAAGTACAAATTTAGATTCTTCAGGTTCAAGCAGGTGGATTACATAATCCAGATTTATTCTGAATTTCAGAATTTTATTTTAATGTTATTAACAGTGTAATGTCTTCATAACTGCAGAGTGGAAGATTGGTTGGAAGAAGCAACGGCAATCAGGAAAAATGATCAGCAAGAAAAAATGACCATCTTTTACAATGGCAAGATATGCATTTGCGCCGTCACTGAGCATCAGGTTTGTATTGTACGTTTTTTCACCTTTAGGAAAATGAATTCTACATTAAGTAAATAAAAGTTTGAAATGTCTGTTATAGGCTAGAGCTATCATAAGCATGGCAAATAAACACAGAGAAAGTGGTAGTTCTTCTTCTTCTTGTGAGCATGAGATGATGAATACACAATTTATGAATTCAGGATTGAGGATGAAGAGATCGCTACAGCAGTTTCTGCATAAAAGGAAGAGTCGTATGGATAAAATATCTCCTTATGCATGTAGAACATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252234.1	1.9e-14	protein TIFY 5A-like
Swissprot	Q8LBM2.1	1.7e-10	Jasmonate ZIM domain-containing protein 8
trEMBL	A0A6I9QCV7	1.0e-12	Protein TIFY

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G30135.1	38.76	3e-14	75.5	JAZ8;TIFY5A	jasmonate-zim-domain protein 8

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g344199	AT1G30135.1	129	69	5	112	232	4	130	38.76	3e-14	75.5
g344199	AT2G34600.1	126	73	5	112	229	21	144	34.13	7e-07	51.2

Ortholog group

Species	Genes
Allium cepa	g256502.t1; g256515.t1; g344199.t1; g344213.t1; g344220.t1
Allium fistulosum	AfisC1G01158; AfisC1G01622; AfisC1G02233; AfisC3G05597; AfisC5G02205; AfisC5G04490; AfisC6G04155; AfisC7G06136; AfisC7G06138; AfisC7G06143; AfisC7G06151; AfisC7G06152; AfisC7G06156
Allium sativum	Asa3G00235.1; Asa3G04941.1; Asa6G04717.1
Arabidopsis thaliana	AT1G30135.1; AT2G34600.1; AT3G22275.1
Oryza sativa	LOC_Os07g05830.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06200.11	tify	Domain	150	180	39.5	2.3e-10
PF09425.7	CCT_2	Motif	209	229	25.0	1.1e-05

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003712	F	transcription cofactor activity
GO:0003714	F	transcription corepressor activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009611	P	response to wounding
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009966	P	regulation of signal transduction
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010646	P	regulation of cell communication
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0023051	P	regulation of signaling
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0031347	P	regulation of defense response
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048583	P	regulation of response to stimulus
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0080134	P	regulation of response to stress
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network