result

Gene information

Detail information of g344263

Location

Gene	Chr	Start	End	Strand
g344263	Scaffold_70001:HRSCAF_453087	98606	102764	-

Sequences

CDS

Protein

Gene

>g344263.t1
ATGGCAAGAGGAAAGATACAGATGAGAAGAATTGAGAACCCAGTGCATCGCCAAGTAACATTTTGCAAACGCAGAGCAGGATTGCTTAAGAAAGCTAAGGAGCTTTCTGTGTTGTGTGATGCTGATGTAGGCATACTCATATTCTCCGCAAATGGCAAGCTCTATGAACTAGCCACAAAGGGGTGTGTTTTATTTCTCACTAGCAACATTATGCTCATCTTTCTATGTTATTGTTGTCGTTGTTATTACTTGAAAAGGCCCCTAATATAAAATGTTATTTAGCTTCTGGAAAAAGTTAAAAATAAAATAAAAACAGTGTTAAAATAATCTAATGAGCTTGGGGATTGATTTGATGAAGGAATATGCAAGGTTTGATTGAGAGGTACACAAGGGCACATGGTGAAGCACAACTTGAAAGAAGTGATGAGAACTCATCTCAGGTATAGACATATTGCACTAATTATAAAGTAGTAGTTGTCAATGCATGGTATTAATGCAAAATTAAACTCTAAGTAAAAGATAAGTTAAGGACATAAATGTGCAGTAAAGGTATCTTAATTCAAAAGTACTGAAAAGTAATCAGCACTATTACAGTCATAATAATATAATAATGAAAGTGAGTTGGTTAGATAGAATTTGTTTACTTTAAAAATATTATCATTCTCCCATGTTGTGCATATGCTTTAAGCCAGTCCTATCATATCTATAATGTGTGACCAAAACCCAAATAACTAACATACAAATGTTTTCTTTGATAAAACCACAAGAAATACTCAGTAGCCAATAATATACCATTAAAAAGCCGCGTACTTTCTTTTTTCCCAATTCCATTATTTTTTTAAGTCGGTTTCTTACTTTCTAAACCATCGCTTTTTCAAAGCCCTGATTTTTAAATCAGTGAAAAAATAAAATTTAATTTTTCATTGCTAAATTATTTTTTGGGTTTACAGGATTTTTAATTATAGTTTTGAAGAAAATATGAATTTGGTTTGTAAATTAGTGAAGAAAAAATTCTAACCCTAATTTCTAAATCAGTGAAGAAAAAATTCAATTTTTTACGTTTTGCGTGATGAAAACGATAGTTCTGAAAATGGTAAGGGGTTAGTAAGTTATTTTTTAGGTTTACCGACTTATTTAATGTTTGGAGGGATATTAAATAAATACTCGAGTTAAATAAAATTTGCCAAGAAAAGATATCATACAAATCATGCAAAGGGGTTATGTGATTCCAATTTTGTTATTCAGGGAGGAACATAAAAGACCTTTTTATATCGAAAAGTCTAGTGCAGTTCTTAAAAAAGGATGAAGTTGTATGTTTTTCAATACCGTAAGTTATACATAAAAGAACGTAAACGTAAACCTATAACATAATATTTGATCAGAAAGACATCACTAACAACAGTGTAAAAGAAGAAGAAAAATGGTGAAGGTGGACTTTTGGCCAAAAAAAGGGTTTGTTTGGTTTAAATTTCGAGTTTTGCATTTACATTTCAGTATGTATATCAGAAGGCATGAGAAAGGGGAGGTGAAAAATCATAATTTTACAACAAAAGGGGGAAACGAGAATGTGAACGTGTTTTTGATATTTCTCAAAATGTGGGGGAAAAAAAATCATTTTCAATTTTATATGGTAAATTTATTTTTCAAATCGATCATTTTCCAAAGTTTTCAAAACTACTTGAACCGTATCTGTTTTATTTGTTTTGAAAAACTTAAATTGGAAACGCCAGACAAAAATAGGTCGAAGATTTTCAATTAATATTATGTCTTGTTACAATCTAACAGAGGGAGGAGTTACATTCAAATTAGGTAGGACTTAAAATAGGTTAAGATAATCAAAACAAACAAAAAATTCAATAGATGATCATGCTAACAAGTCCTTAAACAGCTTAGCACTACAATGGCAGGATTCTTATGCTAAACCAAACAGCGTTATTTTTTCTAAAATTATTGACCATTTTGTACACCTAGGGAAATTAAGACCTCAAGCTATTCAAGCTAAGTGCATTATCACTGTAACCAGTGGTCATTGGCCAGCCAGCACCATAATTTGCATCACAATTTACAGAATATGTAAAATGTTATGTTAAATTTAAACTTATTGCATTATTCTACTTTAATGATTAGGAATATTAATCTAGTTGTCATTTTATTTATCTGGAAAACTTAAGTATGCACTACTATACTTCTTTGACACAAGCTTGTTCCAAGGCATTTCTCCTAGAAATATAATAAACAAATAAAAATAAAATAATGCATATTATGAATAACTACAGTATAAAATAACGCATATTGTTTTGTCGTCAGATGTTTTAAGTGATTTACAATCATTCCCCTATATAGGAATGCAAACAAGAAGCATCAATGTTGAAGCAAGAGATCAATTTGCTTCAGAAGGGTTTGAGGTAAATCCGCTTGTATCGCATGATTGAAAATTTTAACCCGCATAATTTATCAACAAAATATAGTGTATACACTATTTGGCAAATGCCACTATACGATATATCAATATAATCTATTTCATGGAGGTGCACAGAACACGCATGGGCATGAACCAAACATGTTAAATGTGGCATGTAACTGTGAACAAAATCCTCTTAGTTTTAGATTCTCATCGTTAAATTAAATGTAGCACTACTGCCAAACATCTAAGAAAGAAATGGAAAAAAAAGTATAATGTAAATTACTTCCTCAAATAATGACTACAGGTACATGTATGGAGATGGTGCGGCATCAAATATGACATTGGATGAAATCCTTGCCCTGGAAAGGCAACTTGAGATGTGGATGTACTACACACGCTCAGCTAAGGTTATTATAGGCTAAGGCTTCATGTTATTCATAAATAATATCATAAAATGAGAAAGCTAAAATATGATTTAATATATAACAGATGCAGATCATGTTTCATGAGATCCAGCAGTTGAAAAACAAGGTTAGCTTGAAGCTTTGATTGTTGTGATAGTTTCATTAGTTAGCAGTGACAGAAGTAATCTAATTAGAAAAAAGATCATGCAAAATAAAATGAAATATTTTCAAAACTTAAGAGCATTATAAAGTGCCTGAGATAATTTACCTCCTTCCAAAAGAATTTGGACTGTATCGTACAAGTTTGTAATTCATGTCCAGAATATACAAATCAGTAACCCAGTTTCATCTCTACGGTTGCGAGCTATAATGTTTAAATAGCCCAAAGGTGGCACATAGGGATCAAGTATAAATTTTATTTACAATAAAGTTAGATTTTTTAAAAAAATCATTCATTCAGGTTTGCATCTTCGAAAAAGCAAATATCTCCAAATCCTATGAAACTTTTGATTTAGCATCTTCCCTATACATGGATAATTTATGGAACTTTGATCCGTAAATTGATACACCATTAGACACATATGCCTTATTCTACACTAACTAAGCTATATTTTTCAGCTTAACACCTAAGCGTTTAATGGTCAATGTAGATCCATCTCAATTGTAGTTGCCTATTTGACATTTTTATTTTTTTAAATTTCAGCACTTAGCACTTATCCTGTAACAGCTTTGAGAAACATTCTGTTCTTATTTTTTGATGCTCCAACTGTTCACTGCAATTCGAACAATATGAATCTCAGTGGAGTATAATCTTTTTTCGATAACTTTATCAGAAATGATTATGAATTTTTAGTCGGTACCTGTAAATTCGATAATATTATTCATGCAGGAAGGCATGCTTAAGGCTGCCAATGAACACCTTCAGGAAAAGGTAGCTAGACAATATTAAGTTGTGTGTTCCTCATATTAATATGAAAAGTCAAATGTTTGATATTACATTCATACACACGCACGCACGCATATATATACACATACATAAGAGAAAATGTGGCAAAAGTCTAGGGAGTTTCCAGTATTTTTCCATGGGAATCTACAATTATACACCCGCCCTATACCAGAGCTTACGTATGCAGGTATATATGTATGTATGCATGTAACAAAAAAAAACTATACTAACAATAAATAATCAATGTGAATGCAGATAGTAGAACAGAATGGTATATTTGACCTAGCCCCACTGACTATAGATCAGAGCGGGTTTTTTAATGTCGCTCCTCAGATGTTAGCTGATGTTCCATACCCACTAACTATACAGAATGACGTGATTCCAGTTTTAGGAACCTTTTATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261979.1	1.9e-88	MADS-box transcription factor 26-like
Swissprot	A2YQK9.2	1.3e-65	OsMADS26
trEMBL	A0A804L910	1.3e-70	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G71692.1	50.68	1e-50	196	AGL12;XAL1	AGAMOUS-like 12

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g344263	AT1G71692.1	221	89	3	1	213	1	209	50.68	1e-50	196
g344263	AT2G45650.1	179	100	2	1	179	1	177	43.02	2e-32	135
g344263	AT2G45660.1	174	84	5	1	171	1	170	47.70	2e-32	135

Ortholog group

Species	Genes
Allium cepa	g344263.t1
Allium fistulosum	AfisC2G06260; AfisC4G03334
Allium sativum	Asa4G02602.1; Asa6G03659.1
Arabidopsis thaliana	AT1G71692.1
Oryza sativa	LOC_Os08g02070.1; LOC_Os12g10520.1; LOC_Os12g10520.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	10	56	82.8	7.4e-24
PF01486.14	K-box	Family	82	172	78.5	2.9e-22

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0048364	P	root development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09260	MEF2A; MADS-box transcription enhancer factor 2A	EC:-	MAPK signaling pathway - fly	ko04013
			Apelin signaling pathway	ko04371
			cGMP-PKG signaling pathway	ko04022
			Parathyroid hormone synthesis, secretion and action	ko04928

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network