result

Gene information

Detail information of g348688

Location

Gene	Chr	Start	End	Strand
g348688	Scaffold_70462:HRSCAF_453548	240124	242793	+

Sequences

CDS

Protein

Gene

>g348688.t1
ATGTATCAACCTAAAATCATTTATAGTATCAATCAAAGTCATGATAATTCACTTGCTCAGGACCCACAGTTAGAACCGAGTGGCAAGGCTATGGGCACCAACGATGGACCCATCAATCCCGGTAACCCCAATATGTCATCGAGACAGAGACTAAGATGGACACATGAGCTTCATGAACGCTTCGTAGATGCTGTAACTCAGCTTGGTGGACCTGATAGTCAGTATTTTATATTTGTTTGATTAGTTACATCTTTGTTGAACATATAAGCATGATAAGCTGAATCATTAACCTATATCAAAAATTTGTGCTCACACACACAGAGAGGTAATAACAATTCCAGTGGTTAATTGAAATTGAAGATGTTAGCTGAATTCCCAAATTATTTATGCTTTCAATCTGCAATCTTGATTGGCTTGTTTGTAAAACTACATTTTGGTATGTGCACATAAAGCTGCGCACAGATAGAAACTTCTTGTCCTCCCAAACTATATTTGCCATAATTTATAAAGGATCTCCAATGGTAGCTGAAATTTTTTTTTTACAGAGTTCAGACTACAGTATATATATTACTTATATATGCATGTTCATATATGCTCATATTGTTAAATAGGGGCTACACCAAAGGGTGTTCTCAGAGTCATGGGTGTACAAAGCTTAACTATATACCATGTCAAGAGTCACTTACAGGTACTTGGTTTGTAGTCATTTTTTTGTACCAGTATTTCTTTTCTTCCGTTTCTGACCTTAAGGTATTATTGTTCTAGAAATACCGCCTTGCAAAATATGTACCAGAATCTTCACCTGATGGTAATTGCTCCACTACTTGCTGATATTTGATAACCTCTCTAAGGCAGTACTTAGTTGTACTTACATTGTCATTTCTGTAGGTGAAAATGGGGACAAGAAAGACTCTGGTGGCCATGGAAGCGAAAGTTCATCGTAAGTTTTTATGGCATTTTATGTGCTTTTATTACTTGGTAGCGCTTTTTGTGCCTTTTTCTGTGTATATCATGCAAAAGGAATATGTAAAGTTCATCACAGCTGCTAGACTTGCCTTCTTATTTTTGTGTTTTTATATTTGTTCTTGTTTGTATTTATTATATTTATATATATATCTGTTAAGGTGATACTTATGCCCACTGATTTCTGTATGTCTTTGTTCTCAGTGGGATGCAAATAACTGAAGCATTAAAGCTGCAGATGGAAGTTCAGAAGCGGTTGCAAGAACAGCTAGAGGCAAGTCATTGTATAAATATTTAACTAGGCCTTATTTTGAAGTCATCAAACGAAAAACAGTAGCTCTATGTGTATTTATATAGCATCCCCAGGTCATCCTCTACTCACTTTTACATGTTTTTGTATCTACACTTATCCCGAATCAAACAATGTCTGCATATATTATCTTATTTATATCACGTCTCTACAAAAAATTAGATGATTCCAATAGTTCAAGACCTGTCAAAATTAATAATCAAATTAAATGGTCATATGTTAAATAATTTAAATAACTACGATACCTAAAAAATGAGTTTTGATGAAACAGAAGTGTCAAAATGATGTTGATCTTTCTGCAAGAATGATTTTGATGTACGCTAGGTCATACATGCAAAAATTGTCTAATTCCAACAATTGTAGATACCAGGACATGAATTAAAAACTATTTAGGGGTGCAAAATGTGGGTGATGTGGGGATGTGTGTATATCCCTTTTATTTATGCACTAAAAGCCTCCTTTTGTTTCTCTGTGTAAAAGTTTGTGGAACGAAGTGAAATTTTGTAGCCATGTTGATGTTATATTCGTTAGCAAAATAGACTGCAAAATTTGAAATTATTCCGAGACTTCTGACCCCTTCAAAATCATATTTAAAGTTGACATTTAAAAAACATTTATTTTCAATGGTTCATATTGGCTTTTAATTTTAACGAAATTAGAAGTATTAAAACTGAATCCAAATTTGGTATAGTTGATCTTGCTAGAACATAACATCTATAGTATTAAAACTGAATCCAAATTTGGTATTGTTGATCTTGCTAGAACATAACATATCTATAAAAAGTCACCTCAGTCTGGACTTTTTTAAACAAAAAGACACAGGAGGATCTTAGGGGGATAAATAAGAGGAGGGATATGTATCCTTTATTTTGGCTGATATCAAGCGCTACGAAATGGTGCTAAATAAAGGGGCTATTGATCCTAGCTCTATGTACTTGATGTGGTGGTCCGTGACGGTTTCTTTATGCGTTGCTTATGATGAGCTTCAAATTGTGTCTTTATAGGTTCAAAGACAGCTACAACTTCGAATAGAGGCGCAAGGCAAATACTTAAAGAAAATAATGGAAGAACAGCAGAAGCTCTCAGCAGTCCTGTCCGAACCTCAACCAGGCCAAGACTTCAACGACAAGGCAGAACCCACAACTCCGGGCCCAACCTCCGAGAACAGGCCCACAGCTACAAATGCGGTCGAGTTCTTCAAAAATCTCTCGAATGATAACTCAGCATCTAACGTTCATGAGCCAATGACTCCTGATTCTAGCGTATACGAATCGATTTTGGAGAATCAGATCCAGGAGTTACCAAATAAAAGGCAAAAACATATTTACGACGAGACTACAGATATACTTCTTCAGCATCGTTTACTGGAGTCCAGTTCTGGTTCCGAGTTTGAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008794708.1	7.8e-58	myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0.1	2.4e-40	Protein PHR1-LIKE 7
trEMBL	A0A8B8J6M3	1.6e-57	myb family transcription factor PHL7-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G01060.1	60.47	7e-73	270		myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g348688	AT2G01060.1	253	86	6	41	282	6	255	60.47	7e-73	270
g348688	AT2G01060.2	209	82	5	83	282	1	206	55.02	4e-49	191
g348688	AT3G24120.1	168	62	4	28	178	17	184	52.98	1e-41	166

Ortholog group

Species	Genes
Allium cepa	g348688.t1
Allium fistulosum	AfisC3G08388
Allium sativum	Asa2G06908.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	50	101	34.2	1.9e-08
PF14379.3	Myb_CC_LHEQLE	Family	132	178	78.3	2.3e-22

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0010087	P	phloem or xylem histogenesis
GO:0010088	P	phloem development
GO:0010089	P	xylem development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network