Detail information of g349208


Location
GeneChrStartEndStrand
g349208CHR389379088959716+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020277414.11.3e-258uncharacterized protein LOC109851599
SwissprotO16102.33.0e-55ATP-dependent helicase Chd3
trEMBLA0A5P1FPI69.0e-259Helicase protein MOM1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G44800.129.711e-65 249CHR4;PKR1chromatin remodeling 4

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Ortholog group
SpeciesGenes
Allium cepag297461.t1; g349208.t1; g349209.t1; g377188.t1
Allium fistulosumAfisC1G04777; AfisC1G04778; AfisC1G04779; AfisC1G04796; AfisC1G05133; AfisC1G05141; AfisC1G05142; AfisC1G05143; AfisC1G05144; AfisC1G05145; AfisC3G08571
Allium sativumAsa2G07113.1; Asa2G07114.1; Asa4G03727.1
Arabidopsis thaliana
Oryza sativaLOC_Os02g02050.1; LOC_Os06g01320.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00385.21ChromoDomain52157129.64.4e-07
PF00385.21ChromoDomain58663326.34.6e-06
PF00176.20SNF2_NFamily73396435.25.1e-09
PF00271.28Helicase_CFamily991108321.60.00019

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006325Pchromatin organization
GO:0006342Pchromatin silencing
GO:0006344Pmaintenance of chromatin silencing
GO:0006355Pregulation of transcription, DNA-templated
GO:0006996Porganelle organization
GO:0046983Fprotein dimerization activity
GO:0008150Pbiological_process
GO:0042802Fidentical protein binding
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0016043Pcellular component organization
GO:0016458Pgene silencing
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0040029Pregulation of gene expression, epigenetic
GO:0042803Fprotein homodimerization activity
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045814Pnegative regulation of gene expression, epigenetic
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11642CHD3, MI2A; chromodomain-helicase-DNA-binding protein 3EC:3.6.4.12 --
K11643CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4EC:3.6.4.12 --
K20091CHD2; chromodomain-helicase-DNA-binding protein 2EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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