Gene | Chr | Start | End | Strand |
---|---|---|---|---|
g349208 | CHR3 | 8937908 | 8959716 | + |
CDS |
Protein |
Gene |
Database | accession number | e-value | annotation |
---|---|---|---|
nr | XP_020277414.1 | 1.3e-258 | uncharacterized protein LOC109851599 |
Swissprot | O16102.3 | 3.0e-55 | ATP-dependent helicase Chd3 |
trEMBL | A0A5P1FPI6 | 9.0e-259 | Helicase protein MOM1 |
TAIR id | % identity | e-value | bit score | gene aliases | Short description |
---|---|---|---|---|---|
AT5G44800.1 | 29.71 | 1e-65 | 249 | CHR4;PKR1 | chromatin remodeling 4 |
Species | Genes |
---|---|
Allium cepa | g297461.t1; g349208.t1; g349209.t1; g377188.t1 |
Allium fistulosum | AfisC1G04777; AfisC1G04778; AfisC1G04779; AfisC1G04796; AfisC1G05133; AfisC1G05141; AfisC1G05142; AfisC1G05143; AfisC1G05144; AfisC1G05145; AfisC3G08571 |
Allium sativum | Asa2G07113.1; Asa2G07114.1; Asa4G03727.1 |
Arabidopsis thaliana | |
Oryza sativa | LOC_Os02g02050.1; LOC_Os06g01320.1 |
Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
---|---|---|---|---|---|---|
PF00385.21 | Chromo | Domain | 521 | 571 | 29.6 | 4.4e-07 |
PF00385.21 | Chromo | Domain | 586 | 633 | 26.3 | 4.6e-06 |
PF00176.20 | SNF2_N | Family | 733 | 964 | 35.2 | 5.1e-09 |
PF00271.28 | Helicase_C | Family | 991 | 1083 | 21.6 | 0.00019 |
Accession | Ontology | Name |
---|---|---|
GO:0051276 | P | chromosome organization |
GO:0005515 | F | protein binding |
GO:0005622 | C | intracellular |
GO:0005575 | C | cellular_component |
GO:0003674 | F | molecular_function |
GO:0005488 | F | binding |
GO:0005623 | C | cell |
GO:0005634 | C | nucleus |
GO:0043231 | C | intracellular membrane-bounded organelle |
GO:0006325 | P | chromatin organization |
GO:0006342 | P | chromatin silencing |
GO:0006344 | P | maintenance of chromatin silencing |
GO:0006355 | P | regulation of transcription, DNA-templated |
GO:0006996 | P | organelle organization |
GO:0046983 | F | protein dimerization activity |
GO:0008150 | P | biological_process |
GO:0042802 | F | identical protein binding |
GO:0009889 | P | regulation of biosynthetic process |
GO:0009890 | P | negative regulation of biosynthetic process |
GO:0009892 | P | negative regulation of metabolic process |
GO:0009987 | P | cellular process |
GO:0010468 | P | regulation of gene expression |
GO:0010556 | P | regulation of macromolecule biosynthetic process |
GO:0010558 | P | negative regulation of macromolecule biosynthetic process |
GO:0010605 | P | negative regulation of macromolecule metabolic process |
GO:0010629 | P | negative regulation of gene expression |
GO:0016043 | P | cellular component organization |
GO:0016458 | P | gene silencing |
GO:0045892 | P | negative regulation of transcription, DNA-templated |
GO:0019219 | P | regulation of nucleobase-containing compound metabolic process |
GO:0019222 | P | regulation of metabolic process |
GO:0031323 | P | regulation of cellular metabolic process |
GO:0031324 | P | negative regulation of cellular metabolic process |
GO:0031326 | P | regulation of cellular biosynthetic process |
GO:0031327 | P | negative regulation of cellular biosynthetic process |
GO:0040029 | P | regulation of gene expression, epigenetic |
GO:0042803 | F | protein homodimerization activity |
GO:0043226 | C | organelle |
GO:0043227 | C | membrane-bounded organelle |
GO:0043229 | C | intracellular organelle |
GO:0044424 | C | intracellular part |
GO:0044464 | C | cell part |
GO:0045814 | P | negative regulation of gene expression, epigenetic |
GO:0045934 | P | negative regulation of nucleobase-containing compound metabolic process |
GO:0048519 | P | negative regulation of biological process |
GO:0048523 | P | negative regulation of cellular process |
GO:0050789 | P | regulation of biological process |
GO:0050794 | P | regulation of cellular process |
GO:0051171 | P | regulation of nitrogen compound metabolic process |
GO:0051172 | P | negative regulation of nitrogen compound metabolic process |
GO:0051252 | P | regulation of RNA metabolic process |
GO:0051253 | P | negative regulation of RNA metabolic process |
GO:0060255 | P | regulation of macromolecule metabolic process |
GO:0065007 | P | biological regulation |
GO:0071840 | P | cellular component organization or biogenesis |
GO:0080090 | P | regulation of primary metabolic process |
GO:1902679 | P | negative regulation of RNA biosynthetic process |
GO:1903506 | P | regulation of nucleic acid-templated transcription |
GO:1903507 | P | negative regulation of nucleic acid-templated transcription |
GO:2000112 | P | regulation of cellular macromolecule biosynthetic process |
GO:2000113 | P | negative regulation of cellular macromolecule biosynthetic process |
GO:2001141 | P | regulation of RNA biosynthetic process |
KO | Name | Enzyme ID | Pathway | Pathway ID |
---|---|---|---|---|
K11642 | CHD3, MI2A; chromodomain-helicase-DNA-binding protein 3 | EC:3.6.4.12 | - | - |
K11643 | CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4 | EC:3.6.4.12 | - | - |
K20091 | CHD2; chromodomain-helicase-DNA-binding protein 2 | EC:3.6.4.12 | - | - |