result

Gene information

Detail information of g350829

Location

Gene	Chr	Start	End	Strand
g350829	Scaffold_70674:HRSCAF_453760	138256	139965	-

Sequences

CDS

>g350829.t1
ATGTTTCCTTGCTACCCACATTCTTCAAGTGGTGGTGTGAAAATGTTTGCATTTACATCATCGCAGTGGGAAGAATTTCAGAGACAAGCTCTGATCTACAAATACATAATCAGATGCGTTCCTGTCCCTTCTCATCTTTTATTCCCTTCCACTCCTGCTGTTTATTTCTCTGGAGGAGGCAGTATGGATCCAGAACCGGGGAGATGCAGGAGAACAGATGGGAAGAAATGGAGATGTGCAAAAGATGCAGCGCCTGAGCAGAAGTACTGTGAAAAGCATTTGATAAGAAACAGACCTCGTTCAAGAAAGCTAGTGGAACAACGCAAGACTAAGCACAAATCTAGCGCTGGGTCATCTAGTACAAATGCTGAGGACAGCGTCGAGAATATTAAAACGGCAATTGAGCTGAATGACTCGGTGCAGACTAACAACTTTGGCGAAGAGAAAGGGTACAGAGAGTGGCCAAAGAGCAGCTATTCAGAAACCCAGGCTTCGGATAAACAACCTGATGCACTGTATTCTTCCATTAACACAGGCTTAAAATTCAACACCATAGGTGCACACTCGGTCATGCAACGCTACACTGAGTTACCGAATCTGAACTATAATGACGCAAACAACGTTTGGAACCCATTCATTCATTCCACTGGCTCTGCTGACTGCGATAAACCAGCACAAACTTATTTTGATGCCTGGTCTACTGAGAACAACAGTGCTAATCTTCCATTGCCAACCCTAAGCTTGTCGATCCCTACTGCAATCGGGGAAGACTCCACTCAGGATATGAAATCACATCAATTGTATAACTGGATGGGGCTTGATTCTACTGTTGGGGGGCCGTTGGCTGAAGTGCTTCATTCTAGTAATTTGACTTCTCATGAGTCAAGTCCCAGAGAGAGTTTTGTTTCTTCGCCTTCTGGCGTTTTGCAGAAGGCCATTGCTACTCTCTCTGATAGCAGTGGGAGTAGTAGTCCTACCTTTGTAGGTCGATGGATGAATTTGAACAAGTGA

Protein

Gene

>g350829.t1
ATGTTTCCTTGCTACCCACATTCTTCAAGTAAGCAAATTCAATATATGTTTTTGTACGCTGGACCATTTTTATCATGTTAAATCAACTGTTCCTTTTCTTTTCTTTGATCACAGGTGGTGGTGTGAAAATGTTTGCATTTACATCATCGCAGTGGGAAGAATTTCAGAGACAAGCTCTGATCTACAAATACATAATCAGATGCGTTCCTGTCCCTTCTCATCTTTTATTCCCTTCCACTCCTGCTGTTTATTTCTCTGGTATCAGCACATACACAAATTTCCATATTTAATTAATTATTTATTTATTTCGTAAATGTTGTTGTTTAAAAGTAAAATGAAACTACAGGAGGAGGCAGTATGGATCCAGAACCGGGGAGATGCAGGAGAACAGATGGGAAGAAATGGAGATGTGCAAAAGATGCAGCGCCTGAGCAGAAGTACTGTGAAAAGCATTTGATAAGAAACAGACCTCGTTCAAGAAAGCTAGTGGAACAACGCAAGACTAAGCACAAATCTAGCGCTGGGTCATCTAGTACAAATGCTGAGGACAGCGTCGAGAATATTAAAACGGCAATTGAGCTGAATGACTCGGTGCAGACTAACAACTTTGGCGAAGAGAAAGGGTAAACAATAATTATGTTTGGTGATCATGTGACATTTTCTTGCAGTGATACAAGTTTGGTTGGTACTTTCTTTGAAATGCATCTTTGTTTCTAGTAAACACATTAACAAATAATGAATAAAAATAGATGTATCATTAAGCAGATCAAACAACTGCAATGATCAAATATAGCGTTATATAGTTGATAGAATAATTAAACGTGGTGAACTTAGATGAATTTTGCAATGCTTTGATCTCTACAAATTTGAGTCCGATCTGTATACTCATCTGTGATACAACCATGATATAGCTATTAAAATTTAAACTTGCCTACATTCCCAATTTTGAATGCTTGATTGAATGCTATAAGTTGTTACCCGTACGCTGACATTGTTACCTGTACACCGACATTGGCCTGCTATGAAGTTGTTACCTGTACATTGACATTCTGCCTGTTATGGTTTCTTAATCATCTAACCTTTGCAAATCAACAATTTAGCTATGTTTCAGCCTTTCAGGTCTTATTTCTCTACCCTAAAACCTGCAGGTACAGAGAGTGGCCAAAGAGCAGCTATTCAGAAACCCAGGCTTCGGATAAACAACCTGATGCACTGTATTCTTCCATTAACACAGGCTTAAAATTCAACACCATAGGTGCACACTCGGTCATGCAACGCTACACTGAGTTACCGAATCTGAACTATAATGACGCAAACAACGTTTGGAACCCATTCATTCATTCCACTGGCTCTGCTGACTGCGATAAACCAGCACAAACTTATTTTGATGCCTGGTCTACTGAGAACAACAGTGCTAATCTTCCATTGCCAACCCTAAGCTTGTCGATCCCTACTGCAATCGGGGAAGACTCCACTCAGGATATGAAATCACATCAATTGTATAACTGGATGGGGCTTGATTCTACTGTTGGGGGGCCGTTGGCTGAAGTGCTTCATTCTAGTAATTTGACTTCTCATGAGTCAAGTCCCAGAGAGAGTTTTGTTTCTTCGCCTTCTGGCGTTTTGCAGAAGGCCATTGCTACTCTCTCTGATAGCAGTGGGAGTAGTAGTCCTACCTTTGTAGGTCGATGGATGAATTTGAACAAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262445.1	3.6e-46	uncharacterized protein LOC109838406
Swissprot	Q8L8A8.1	2.8e-27	Transcription activator GRF2
trEMBL	A0A5P1EZX7	4.6e-43	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37740.1	51.20	8e-30	127	AtGRF2;GRF2	growth-regulating factor 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g350829	AT4G37740.1	125	43	2	12	119	160	283	51.20	8e-30	127
g350829	AT2G22840.1	112	31	4	12	106	129	239	56.25	5e-27	118
g350829	AT5G53660.1	105	48	1	16	118	58	162	52.38	1e-25	114

Ortholog group

Species	Genes
Allium cepa	g350829.t1
Allium fistulosum	AfisC2G03709; AfisC6G06795; AfisC8G01489
Allium sativum	Asa6G02709.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	17	49	39.7	2.7e-10
PF08879.7	WRC	Domain	64	106	65.9	1.8e-18

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009639	P	response to red or far red light
GO:0010114	P	response to red light
GO:0010218	P	response to far red light
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050896	P	response to stimulus
GO:0080167	P	response to karrikin
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network