result

Gene information

Detail information of g352689

Location

Gene	Chr	Start	End	Strand
g352689	Scaffold_70870:HRSCAF_453956	158240	160862	+

Sequences

CDS

Protein

Gene

>g352689.t1
ATGTTTAGCTTTCTTCTGAGTTCTTCCATAACCAAACACTTCTCGAAATCATACTGTTCAATTTCAGTAAACCCATCAGCATCTCTAACTCTTCATTTCCTAAGACAATCATGTGGTCTCTCTCAAGAGTCATCCCTTGCCGTTTCCAAAAAAATTCATTTGAAAAGAACAGCAAAACCTCATTCAGTCCTTTCCCTTCTCAAGTCTTACAAATTTTCAAAATCCAATATCAAAAGAGTAGTTATGCGTGTTCCAGAACTCCTCCTATACAGTCCAGACCAAAATCTAAAGCCCAAACTCGAGTTCTTTGAAAACATTGGTTTCTCAGGCAATGCATTAACATTCCTCATCACTTGTGTTCCCACTTTGCTCCAATTCAGCTTAGAGAACATGCTTCTTCCAAACTATAAAACATTAAAATCCGTTTTGCGTACAGATGAAAATGTAATGTCTGCCATAAAGAGTTCAAGTGCATTGCTTGTATCCGATCTTGATAAGACATTCCTACCCAAGGTTAAGATTCTTGAAGAAAATGGTGTTTCTAATGGGGTAATACTTAAGTTATTGACTAACTATGACAAGCAATTGGTAGTTAGGCCTAATAGGTTCGATGAAATTATTGAATTTGTTAGAAAGATTGGGATTGAACCAGAAAATCCGATGTATGTGCATGCTTTTCGAGTGCTCGGTAGAATGAGAGTAAACGAATGGGAAATGAAAGTTGAAAATTTCAAGAAATTAGGGTGGACTGAAGAAGAGGTTTTGTTTACGTTTACAAAGCATCCTTATTGTATGAGTGCATCAGTTTATAAGATCACAAAGAATATAGAGTTTTTCAAGGAGAAATTTGGTTGGGATTCGAGTTATGTTTCGAGAAATCCACGTGTGCTTTCATTTAGTCTTGAGAAAAGAGTTATGCCAAGGTATAGAATTTTGAATATGTTGAAAAGTAAAGGGCTGCACAGTGGAAAAGTTGGGTCTTATTATTTGAACATCAGTGAAAAGGATTTCTTGGTGAAATTTGTGATCAAATACTATGAAGAAGTTTCGGAGGTAATTGATGATGATGTCAAATGTAGATTGGAAGAGTTAGGCTTGTTGACCGAGAGTAAGTAGAATACTGCAGTTATATTTGACTTTGGCATAAACGTTTATGGTGTTTCTCTTGCTCTTGGTTTAAGGATTGAAAATGTTAAACCTTGTTTGGTTTGCGGTTTTAGGTTTTTGTAACAATTGAAATGCATCTAATAAGTATTTTTGAAAACTTTGTAGGAAAATGATGAATTTTGAAAATGATTTTAACGTGTAAAACCAAAAACGATTTTTTTCTTGTTTTCCACTTTTTGTGAAATATCAAAAAAGTCGATTTTTCCACTTCTTTGTTCTCTTATTTCAATTCAAATCAAGCGGGTCTTTTAACTTCTTGGAATTTTTCTAATTTGTTTTTGTTTATGTTTTTATATATAAGATACAAGATGTGTGATGCAAGGGAACAGAGAACAAAGATTATGTTGGGATTTCAGAGAATCTTAATTAATCATTATTATTTTAAAGGATTTTTTGGAGACTCCGTTGAAATTGATCTCTTGTATATGTTTTCTTGACAATATAATCAAAGTCTTTTTATTTTGTTTTTTCAGTATTAATGTCCTTAAGAATCAAATAATAAAACTAACTTCGGCTTTGTAACAAGTGAGTTTATGGATTTGAAATCCTGAGTGACTCTATTTATCGATTCAAATCATAATCAGCAAAAAAAAGCTTTTTTTTTTTTTTTAATTTATTCAAATCCTAATTTACCGACCACGCATTATTCACATCTGACTGACCGTAGATTCAATGAATTTATGGATTTCCTTTACAAACTTCTCTTACGGTTTAATTCTATCTATTTTTGCTTACACACAAGTTTTCATCTTGCAATACTATTGTTAGTATTGACCTCGTGGCAACAATCCATCAGTTGCATTAGTGAGTTATTCTTTGTTCATTTTGGCTTTAAACTTAAGGGACTGAATATGTTTGCGCATTGAATAAACGATGTTAGTTCAAAAGCTGAAAGTGAACTGAATAATAGTCTATGTCTTTGTGAAAATGTACACAACCAAAATTACACACGTTAGGTATTTCTCTCAGCTCCTTTGGGACACAGAGTCTTTCTTTGGGGAGTGTAGAACATGGCAAATAGCGTTTGATTAAAAACATTATTTAGGTTTAGGCGATTCTTATTTAACCTACAATGCAACATAAGTAGAAGCTGATTTCTTCATCAGATAACAAATTCTGTTGCACCACTTTGACTCTGAAATCAAACTGTTTCATCAAAGTACCTTCAATTTGATCAATTAGACTCATTTAGACTATACATGTTTTATGAAACACCATTGCGAATTTAGAAGGAAGTCAAAGACCTTTTTTTAAGATTAGAGAACCAAACTTTACTTGTAAAATCTAAGAAAGTATGTACCGAACCCAGGACACATATTTCAGGTAATTCATAAGAATGTGTAGTTGGTGAGAATTGAACCATTGACCTTTAATATAAGATGAGCGCCGCATGTCCTAACCACTGCACTACTTTGGGATTAAGGAGGTCAAAGTTTTTATCGCAGAATCTATTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250225.1	8.1e-55	uncharacterized protein LOC109827619
trEMBL	A0A1R3L6K0	5.8e-55	Mitochodrial transcription termination factor-related protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G07900.1	33.71	9e-53	204		Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g352689	AT5G07900.1	356	232	3	7	359	48	402	33.71	9e-53	204
g352689	AT1G21150.1	328	222	1	28	353	56	383	31.71	5e-44	175
g352689	AT5G64950.1	358	243	7	13	359	26	377	27.37	6e-33	138

Ortholog group

Species	Genes
Allium cepa	g137981.t1; g151850.t1; g151859.t1; g151920.t1; g156999.t1; g177896.t1; g207063.t1; g325319.t1; g325322.t1; g352689.t1; g44535.t1; g465549.t1; g9136.t1
Allium fistulosum	AfisC2G03422; AfisC3G05774; AfisC3G05778; AfisC3G05804; AfisC3G06464; AfisC3G06510; AfisC3G06522; AfisC4G06644; AfisC7G06268; AfisC7G06271; AfisC7G06274; AfisC8G02836; AfisC8G03675
Allium sativum	Asa0G00789.1; Asa0G04492.1; Asa0G04493.1; Asa1G04728.1; Asa2G04773.1; Asa2G04774.1; Asa2G05430.1; Asa2G05446.1; Asa2G05448.1; Asa3G00108.1; Asa3G04942.1; Asa4G03457.1; Asa4G05825.1; Asa5G02013.1; Asa6G01473.1; Asa6G01474.1; Asa7G06799.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	58	337	121.5	3.2e-35

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network