result

Gene information

Detail information of g355324

Location

Gene	Chr	Start	End	Strand
g355324	CHR5	188851665	188853378	+

Sequences

CDS

>g355324.t1
ATGGCGTCTTGCAATTCAACCGGTAACACATCGGTTCGAGATTGCTCTATATGTTTTGAATTAAATATCTCTCTTTTCACATCCCATCATCAAATTTATCAAATTTTCCGCAGTTTCTCGCCCTCTCCACAGCGCTTTGAAGCGCTTTTAATGGCAGCAGATGCCGCCTCAGATCTCCCAAACCGACCCATTCCTAACACTCTCAGAAGATCCGATTCCAATTCCGTTCTACTGAACAAATACGAGCTGGGCAAGCTCCTCGGCCATGGAAATTTCGCCAAGGTTTACCTCGCCCGCAACCTCGCCTCCAACGAAGAAGTCGCTATCAAAGTCTTCGACAAAGAGAAAATCCTCAAATCCGGCCTCGTCAACCACACCAAACGCGAGATCTCAATCCTCCGCCGTCTTCGTCATCCGAACGTCGTCGAGCTCTTCGAGGTCATGGCCACTAAATCGAAGATCTATTTCGTCATAGAGTACGTCCGCGGTGGTGAATTATTCGGCAAGGTAGCCAAAGGACGTCTCAACGAAAACACCGCAAGAAAGTACTTCCAGCAATTGATTTCCGCCGTTGATTTCTGCCACGCCAGAGGCGTTTACCACAGAGATCTGAAGCCGGAAAATTTATTATTAGACGATAATGGTGATTTGAAGGTGTCGGATTTCGGATTGAGCGCTGTATCGGACCAGATGAGGCAGGATGGGTTGTTTCACACGTTTTGTGGTACTCCAGCCTACGTTGCTCCAGAGGTTCTCGGAAGGAAAGGGTATGATGGGGCTAAGTTTGATATTTGGTCATGTGGTGTTATTTTGTTTTTGTTGATGGCAGGGTATTTGCCCTTTCATGATCAAAATGTGATGGCTATGTATAAGAAGATTTATAAAGGGGAGTTCAGGTGTCCGAGATGGTTTTCAAAGGATTTGACATTGTTGCTGATGAGGCTTCTCGATACAAATCCCAAAACCCGGATCACTATTCCAGAAATAATGGAGAATAGATGGTTCAAGAATGGATTCGAGCCTGTGAAATATTACATTGAGAATGATAGGTTTCATAAGTGGTGTAGCTTAGACGAAGAGAATGCTAATGACAACGAGGAGGTAGAATCTGGAGATGAATCAGACTCTTCAGTTGCTTCCTGCCCTCCTACACTTAATGAAGGAAAGAAAAAAAGGACAGGGAAGCTTCATAGGCCTTTGAGTCTGAACGCATTTGACATAATTTCCTTTTCCAGAGGATTTGATCTTTCAGGTTTGTTTGAAGAAACGGGAGATGAAACAAGATTTGTGTCGGGTGAAACGATACCAAACATCATATCGAAATTGGAGGAGATTGCAAAAGTGGGTAGTTTCACGTTTAGGAAGAAGGATTGTAGGGTTAGTTTAGAAGGAACGCGAGAAGGAGTGAAGGGCCCTCTTACGATTGGAGCTGAGATATTTGAGCTTACGCCTAGTTTGGTTGTTGTTGAGCTTAAGAAGAAAGCAGGAGACAAAGCAGAGTACGAGGAGTTTTGTAACAAGGAGTTGAAACCTGGGTTGCTACATCTCATGTTTCCTAATGGCGGTGTTCCTTCCAACACAACTTCTGATACAGAGTAG

Protein

Gene

>g355324.t1
ATGGCGTCTTGCAATTCAACCGGTAACACATCGGTTCGAGATTGCTCTATATGTTTTGAATTGTAGCCGCATTGTGGGAACAAGCAACGCGTTTAATCAAGCGTAGACGTTAGACGGATGAGATTGGTTACGCATGTGAAATATAAACCTAACCAAAACCTAGCTATAAATTCTCAGAAATATCTCTCTTTTCACATCCCATCATCAAATTTATCAAATTTTCCGCAGTTTCTCGCCCTCTCCACAGCGCTTTGAAGCGCTTTTAATGGCAGCAGATGCCGCCTCAGATCTCCCAAACCGACCCATTCCTAACACTCTCAGAAGATCCGATTCCAATTCCGTTCTACTGAACAAATACGAGCTGGGCAAGCTCCTCGGCCATGGAAATTTCGCCAAGGTTTACCTCGCCCGCAACCTCGCCTCCAACGAAGAAGTCGCTATCAAAGTCTTCGACAAAGAGAAAATCCTCAAATCCGGCCTCGTCAACCACACCAAACGCGAGATCTCAATCCTCCGCCGTCTTCGTCATCCGAACGTCGTCGAGCTCTTCGAGGTCATGGCCACTAAATCGAAGATCTATTTCGTCATAGAGTACGTCCGCGGTGGTGAATTATTCGGCAAGGTAGCCAAAGGACGTCTCAACGAAAACACCGCAAGAAAGTACTTCCAGCAATTGATTTCCGCCGTTGATTTCTGCCACGCCAGAGGCGTTTACCACAGAGATCTGAAGCCGGAAAATTTATTATTAGACGATAATGGTGATTTGAAGGTGTCGGATTTCGGATTGAGCGCTGTATCGGACCAGATGAGGCAGGATGGGTTGTTTCACACGTTTTGTGGTACTCCAGCCTACGTTGCTCCAGAGGTTCTCGGAAGGAAAGGGTATGATGGGGCTAAGTTTGATATTTGGTCATGTGGTGTTATTTTGTTTTTGTTGATGGCAGGGTATTTGCCCTTTCATGATCAAAATGTGATGGCTATGTATAAGAAGATTTATAAAGGGGAGTTCAGGTGTCCGAGATGGTTTTCAAAGGATTTGACATTGTTGCTGATGAGGCTTCTCGATACAAATCCCAAAACCCGGATCACTATTCCAGAAATAATGGAGAATAGATGGTTCAAGAATGGATTCGAGCCTGTGAAATATTACATTGAGAATGATAGGTTTCATAAGTGGTGTAGCTTAGACGAAGAGAATGCTAATGACAACGAGGAGGTAGAATCTGGAGATGAATCAGACTCTTCAGTTGCTTCCTGCCCTCCTACACTTAATGAAGGAAAGAAAAAAAGGACAGGGAAGCTTCATAGGCCTTTGAGTCTGAACGCATTTGACATAATTTCCTTTTCCAGAGGATTTGATCTTTCAGGTTTGTTTGAAGAAACGGGAGATGAAACAAGATTTGTGTCGGGTGAAACGATACCAAACATCATATCGAAATTGGAGGAGATTGCAAAAGTGGGTAGTTTCACGTTTAGGAAGAAGGATTGTAGGGTTAGTTTAGAAGGAACGCGAGAAGGAGTGAAGGGCCCTCTTACGATTGGAGCTGAGATATTTGAGCTTACGCCTAGTTTGGTTGTTGTTGAGCTTAAGAAGAAAGCAGGAGACAAAGCAGAGTACGAGGAGTTTTGTAACAAGGAGTTGAAACCTGGGTTGCTACATCTCATGTTTCCTAATGGCGGTGTTCCTTCCAACACAACTTCTGATACAGAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263935.1	5.3e-209	LOW QUALITY PROTEIN: CBL-interacting serine/threonine-protein kinase 12-like
Swissprot	Q9SN43.1	5.3e-190	SOS2-like protein kinase PKS8
trEMBL	A0A8T3A8S2	2.7e-199	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G18700.1	72.67	0.0	679	ATWL4;CIPK12;PKS8;SnRK3.9;WL4	CBL-interacting protein kinase 12

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g355324	AT4G18700.1	450	111	3	70	516	15	455	72.67	679
g355324	AT5G45810.1	482	139	6	62	532	9	483	67.43	660
g355324	AT1G29230.1	449	123	2	70	517	63	503	70.60	631

Ortholog group

Species	Genes
Allium cepa	g355324.t1; g445183.t1; g454613.t1
Allium fistulosum	AfisC5G01096; AfisC5G02253; AfisC6G01658
Allium sativum	Asa4G05818.1; Asa8G04852.1
Arabidopsis thaliana	AT4G18700.1; AT5G45810.1
Oryza sativa	LOC_Os01g55450.1; LOC_Os05g43840.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	81	335	243.1	2.8e-72
PF03822.11	NAF	Domain	399	455	76.6	1.1e-21

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0018105	P	peptidyl-serine phosphorylation
GO:0018107	P	peptidyl-threonine phosphorylation
GO:0018193	P	peptidyl-amino acid modification
GO:0018209	P	peptidyl-serine modification
GO:0018210	P	peptidyl-threonine modification
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07198	PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit	EC:2.7.11.11	Apelin signaling pathway	ko04371
			FoxO signaling pathway	ko04068
			PI3K-Akt signaling pathway	ko04151
			AMPK signaling pathway	ko04152
			mTOR signaling pathway	ko04150
			Autophagy - animal	ko04140
			Tight junction	ko04530
			Insulin signaling pathway	ko04910
			Glucagon signaling pathway	ko04922
			Adipocytokine signaling pathway	ko04920
			Oxytocin signaling pathway	ko04921
			Axon regeneration	ko04361
			Longevity regulating pathway	ko04211
			Longevity regulating pathway - multiple species	ko04213
			Circadian rhythm	ko04710
			Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network