result

Gene information

Detail information of g355854

Location

Gene	Chr	Start	End	Strand
g355854	Scaffold_71331:HRSCAF_454417	229983	232448	-

Sequences

CDS

>g355854.t1
ATGTGTGCAAAATCTGAGCCAACTCTGCTTGATTGTGGTTCTGATTCCGTTACTAAAGTCGATGGTCGAAAATGGGTTGGTGATTCAATTCCCGATGACAATAAAAATTACACTTTGAGTTCATTGGGAACTGTTACTTCAACCAAACTAAGTAGTGATGATTCAATGTACAAAGACTTGTATAAAACTGCTAGAGTCTTCAACTCTTCTTCAAACTACAATTTCAGTGTTATTCCCATGCTTTATTGCATTAGGCTTCACTTCTCGTCTTTCCAATCTGATAGCTTCAACTCAAATGGCTCTATCTTTGATGTATCTGCCAATGGTATCAAACTGGTTTCAAAATTCAATGTCTCTGAAGAAGTTTTCTGGAAAAATTCAGTCACTAATTCAAGTACTTCTTATATAATGAAGGAGTACTTTGTTAACATCACCTCAAATGGGCTTCTCCTCGAGTTTATTCCATTTCCTACCTCATTTGCTTTTGTTAATGCCATAGAAGTCATTCCAATACTCGACACTTTATTTGAGGATTCAGTGAATAAAGTCGGTGGTTATGTAAATAACTATTCGTTAGACCTTACTGATCGAGGAATTGAGACAATGTATAGACTGAATGTAGGAGGACCAGCACTAGAATCTGATATAGACAAGGTTCTATATAGGAGATGGGAAACGGATGAAAAGTACATGTTTAGCTTAAATGCAGCAACAGAAATAAGTAACAAGTCAAATATAAGCTATGCATCTCCTAATGAATTCTCCATTGCACCTATTGAAGTATACGAGACTGCAAGAATCATGACAAACAATGATGTAGTAGAAAGAAGATTCAACTTGTCGTGGCGCTTTGTAGTCGACTCAAACTTCGAATACTTAGTTAGACTGCACTTCTGTGAGTTAGCCTACGATAAAGCAAACCAGAGAGACTTCAAAATCTACATAAACAACAAAACAGCAGCTGAAGATTATGATGTCTTCCTCAAAGCTGGAGGCATGAATCAAGCTTATCATGAAGATTATTTCGATGTTGCTCAAAGCGTCGACACTCTGTGGGTACAGCTAGGGCCAGATTCTATGGTAACCAACTCAGGCACTGATGCACTACTTAACGGCGTAGAAATATTCAAGCTAAGCAAAAATGGAAACTTAGCCCATGCATCCAGGGGCTGTGCTAGTGAAGAAGGTGTCAAAAACAAGAAGCACAAGAGCAAAACAATGTACATGGCAATCGGGCTTGGTGCATTCTCATTAGTAGGCGTATCACTAGCTTCGGCATTCATATTCTTTGTATGCCTTCAAAAGAAGAACAAAAGCAAAATTTTAGACAAAGATCAACCTCCTGGTTGGCACCCGTTATTTCTCCACGAGCTAATGGGGAGCACCAAAAATGCACGAGCTTCTTCAAAGCCAAATTTCACGGCAAGCAACTCAATGGGAAGTCATAGAGGAGGCAAAATGTTCTCTTTACAGGAAATCACAGAAGCAACGAAGAACTTCGACGAGTCCTTAATCATAGGCAACGGAGGATTCGGAACGGTGTACAAAGGCAAAATCGAACAACTAGGGCTCGACGTAGCGATCAAGAGGGCGAACCCCATGTCTCGACAAGGCCTAGCAGAATTCGAAACTGAGATAGAGATGCTATCAAAACTAAGGCATAGACATCTAGTCTCGATGGTAGGCTATTGTGAGGAGAAAAACGAAATGATTCTGGTATACGAGTACATGGCTAATGGCACTCTAAGAAGTCATTTATATGGCACCGACCTCCCTAGTATTTCATGGAAGAAGAGAATAGAAGCATGCATAGGCGCTGCACGTGGGCTGCACTACCTTCATACTGGTGCTGATAGTTGTATAATACATAGAGATGTTAAAACCACAAACATATTACTCGATGAGAATTTCGTGGCAAAAATGGCGGATTTCGGGTTATCAAAGGCGGGCCCAACGCTTGATCATACCCATGTGAGTACGGCTGTTAAGGGCAGTTTTGGGTACCTGGACCCAGAGTATTTTAGGAGGCAGCAGCTGACACAGAAGAGCGATGTGTACTCGTTCGGCGTGGTTTTGTTTGAGGTTGTATGTGCTAGGCCGGTGATTAATCCCACATTGCCAAAAGATCAGATAAATTTGGCTGAATGGGCAGTTAGGTGGCAGAGGCAGAGGTCACTGGAGAGTATAATGGACCCAAGGCTTGAAGGAGACTGCTCGATAGAGTCTTTGAAGAAGATTGGAGAGATAGCGGAGAAGTGCCTTTTGGATGATGGAAAGAATAGGCCGAGTATTGGTGAAGTGCTGTGGCATTTGGAGTATGCATTGCAGTTGCATGAAGCTTATAGTAAGCATGAAGACGAGAGCTCCTTTGCTGATATGAGCTTTGGTTTGATTAGGGGTAGTGAAGGTGAAGGTGACTGCAATGGTAACTTTGAGGATGATGCCATTAGGCCTCAAGGGAGGTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010926938.1	0.0e+00	probable receptor-like protein kinase At1g30570
Swissprot	Q9SA72.1	4.6e-249	Probable receptor-like protein kinase At1g30570
trEMBL	A0A6I9RIR8	0.0e+00	probable receptor-like protein kinase At1g30570

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G30570.1	58.26	0.0	912	HERK2	hercules receptor kinase 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g355854	AT1G30570.1	805	299	16	3	791	28	811	58.26	912
g355854	AT5G54380.1	785	384	15	9	782	33	791	46.37	640
g355854	AT3G51550.1	830	418	19	3	809	31	842	44.70	631

Ortholog group

Species	Genes
Allium cepa	g355854.t1; g539805.t1
Allium fistulosum	AfisC4G01061; AfisC7G06222
Allium sativum	Asa3G00174.1; Asa4G00798.1
Arabidopsis thaliana	AT1G30570.1
Oryza sativa	LOC_Os04g52860.1; LOC_Os07g05370.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12819.4	Malectin_like	Domain	10	377	127.0	8.3e-37
PF07714.14	Pkinase_Tyr	Domain	506	767	159.7	7.5e-47

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0000902	P	cell morphogenesis
GO:0016049	P	cell growth
GO:0016020	C	membrane
GO:0005623	C	cell
GO:0040007	P	growth
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009741	P	response to brassinosteroid
GO:0009826	P	unidimensional cell growth
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0014070	P	response to organic cyclic compound
GO:0016043	P	cellular component organization
GO:0032502	P	developmental process
GO:0032989	P	cellular component morphogenesis
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0044464	C	cell part
GO:0048589	P	developmental growth
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050896	P	response to stimulus
GO:0060560	P	developmental growth involved in morphogenesis
GO:0071840	P	cellular component organization or biogenesis
GO:0071944	C	cell periphery
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network